| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is btuB [H]
Identifier: 167623512
GI number: 167623512
Start: 1897918
End: 1900671
Strand: Direct
Name: btuB [H]
Synonym: Shal_1581
Alternate gene names: 167623512
Gene position: 1897918-1900671 (Clockwise)
Preceding gene: 167623511
Following gene: 167623515
Centisome position: 36.31
GC content: 43.21
Gene sequence:
>2754_bases ATGAGCTCAGTAACCTTAACCGCAAAAGCAGTACGTCGTAGTCTTATTGCTGCTGCAGCTACTAGTGTTGCTTTATCAGG ATTTGTATTTGCAGAAGAAGCGACTGCAGATAATTCAGCAGAAAATAAAGTAGAACGTATTCAAGTTACTGGATCACGTA TTAAGCGTGCAGATATGGAATCAGCAAGTCCAGTAACGGTTATCGATGCTTCAGCAATTATCGCATCCGGTGCGACATCG ATTGATGATGTCTTGCAAAATATGACCGTATCTGGTGGTGCGATGACAAATGCTGCCGTTAACAACGGCTCTGGTGGTAA TGCGCATGTTAATTTACGTGGTCTAGGTACAAACCGTACTTTGGTGCTGGTTAATGGCCGCCGCATGATTGCATCGGGTA CTGGCGCAGCGTCATCGGTTGATTTAAACACTATCCCAGTGTCTATGATCCAACGAGTAGAGGTCCTGAAAGATGGTGCA TCTGCAGTATACGGTACTGATGCAATAGCCGGTGTTGTAAACGTGATCTTAAAGCGTGATTTTGAAGGCTTTGAGATGAA CGTACAAACGGGTGTCACAGGTCAAGGTGATGCTGATGAATCAAGTGTGGATTTCACCATAGGTAATACCTTCGAAAAAG GTAATGTGGTTATCAATGCACAGTACACTAAGCGTGGCGAAGCAAGCCAAGCTGACCGTAGCTTTTCTGAGTGTCCTATT ACTGAAACTTCTGACGGTAGCGAGCTTTATTGTGGCGGTAGCTCATACTCTGAAGGCGGCCATATTTGGGGCGATTCACA TCATGATCTTGTTGGCTCTGGAGAAGATGGTGCATATGAGATTGGAGATTCTGGTTACTATGGCCACTATGTTGCGGGTG ATGATGGTAAAGCTACGTTTGAATACCATGATGAAAATGTTACAGAAGCGAATTTAAGTGGTCGTGGTGGCGAATACCAT GATTTCACAAATGAAGATAAATATAATTATTCAGAGGACAGCTACCTTTCTACGCCAATGGAGCGTTTGAATCTTTCATT CTCTGGTACTTATGAGCTGTCTGATTCAATTTTATTCTTCTCAGAAGCAATGTATTCTAAGCGTTGGTCTGAGCAGCAAA TGGCACCGCAACCAATTTGGAATAGTACTGCTTGGGCGTATGATTCAACTTGGATGACAGACGACTTAGTCGGTCTAGTA CAAGAAGGCGAAATGTTAGATTACGGTCGCCGCGTGGTAGAGTCTGGCACACGTAATTTTTCACAGGTAGTTGATACAGT GCGCCTTGTTGTAGGTCTTGAGGGAGAGTTCGACAATGGTTGGACTTGGGATGCTTCTTATAACAAGGGTAAGAATGATT CTGTTGATACATTAGCTAACTTACACAATCTTGGTTCTATCAATGATGCGGTATTAGCTAAAGAGTTCGATCCGTTTAGT CAAGAATCTTGGGTTGGTGAGAGTATTGAACCTTTTATTTACACAGAAATTAATAGTGGTGGTAGTGAGTTAGATGTCAT AGCCGCGACGCTTTCTGGTGAAATTATGGATTTGCCAGCAGGTACGCTTGGTTTTGCTGCTGGTTACGAATACCGTAAAG AATCGGCACATTACACGCCTGACTCGTTGACTTCACAAGGATTAGCGAATGACCCTCGCCAAGAGGCTACTGCCGGCTCT TTTGATGTGAATGAAGTCTACGCTGAATTAGCGATACCTTTACTTAGCGACCTGCCAATGGCAGAGCAAGTGGATTTAAG TGCAGCTATTCGATACTTTGATTACAGTACATTTGGTTCAGATAGTACTTGGAAACTAGGTTTAACCTGGCGCGTAATTG ATGATTTAATGCTTCGTGGCGTAATGTCTACAGCATTCCGCGCTCCTACGGTCAGTGAGCTATACGGTGGTAAGTCCCCT TCATTCGACCAAATTAAGCATGCAGCAACTGAGCAGACACAGGCTGAAGTTACCGTTGGTGGTAACCCTGACTTAACACC AGAAGAAGCAGATATCACAACCCTAGGTTTGGTATATTCACCAAGCTTTGTTGAAGGCCTGTCTTTGACACTTGATTACT ATAATATTGAAATTACTAATACTATTACCGCAGTTGATTCTAACTACATTGCCAACCAGTGTATGGATGCAACGGGTAAC AAAATTAATAACGATACAGCACTTTGTCAGTCAGCTAATATCGCTATTGACGGCACCGGCAGGATCTCGTTTGACAATGG TTTACAGAACCTAGGTCAAACCAATACAGCGGGCTACGATATTAATGTGGCCTATACCTTCGAAGGTCTAGGTCTAGATT GGAAAGCGGGCTTAGATACGTCAATTATCGATAAATATGAAGAATTTGACCAAGATGGTGTTGCTGTTGATTACCTTGGC TTTATTACTAGTGGTTCAGGCTCGTATGCAAAGTTTAAGTCTAACTTGAACCTTACTGCGACGGGTGATGATTGGAGCGC AACATACGAAGCGCGTTATATTGACGGAATGGATTCATTCTCATGTAACGATGATCCAAGTGAGTGTTATGCGCCAAGTG TAGACAGTGTGGTGTACCATGATCTTTCGGCAAATTATGATTTGACCAGCACAGTTCGTCTGTCGGGCGGTGTTAATAAC ATTTTTGACGAAGAGCCTCCTTACTACTCTGGTAATAATGACTCAAACACCGATCCGTACACTTATGATGTGCTAGGTCG CTTCTTCTTCGTAAGAGCAAGTGTGAAGTTTTAA
Upstream 100 bases:
>100_bases TTTAAACAGTATTTATTGCGAAGCGATTAACTTCTACCGATAAATAAAGAATAAATATAACAATTTCGGGTTTTACACAT CGAAATACGAGGGGATAAAT
Downstream 100 bases:
>100_bases GCTTTTGATTGATTTAGTTAGATAATAAAAAACCTCCGCAAGTCGGAGGTTTTTTTATGGGTTACTCTTTGATACTGATA GCCAGATATTAATCCCGCTT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 917; Mature: 916
Protein sequence:
>917_residues MSSVTLTAKAVRRSLIAAAATSVALSGFVFAEEATADNSAENKVERIQVTGSRIKRADMESASPVTVIDASAIIASGATS IDDVLQNMTVSGGAMTNAAVNNGSGGNAHVNLRGLGTNRTLVLVNGRRMIASGTGAASSVDLNTIPVSMIQRVEVLKDGA SAVYGTDAIAGVVNVILKRDFEGFEMNVQTGVTGQGDADESSVDFTIGNTFEKGNVVINAQYTKRGEASQADRSFSECPI TETSDGSELYCGGSSYSEGGHIWGDSHHDLVGSGEDGAYEIGDSGYYGHYVAGDDGKATFEYHDENVTEANLSGRGGEYH DFTNEDKYNYSEDSYLSTPMERLNLSFSGTYELSDSILFFSEAMYSKRWSEQQMAPQPIWNSTAWAYDSTWMTDDLVGLV QEGEMLDYGRRVVESGTRNFSQVVDTVRLVVGLEGEFDNGWTWDASYNKGKNDSVDTLANLHNLGSINDAVLAKEFDPFS QESWVGESIEPFIYTEINSGGSELDVIAATLSGEIMDLPAGTLGFAAGYEYRKESAHYTPDSLTSQGLANDPRQEATAGS FDVNEVYAELAIPLLSDLPMAEQVDLSAAIRYFDYSTFGSDSTWKLGLTWRVIDDLMLRGVMSTAFRAPTVSELYGGKSP SFDQIKHAATEQTQAEVTVGGNPDLTPEEADITTLGLVYSPSFVEGLSLTLDYYNIEITNTITAVDSNYIANQCMDATGN KINNDTALCQSANIAIDGTGRISFDNGLQNLGQTNTAGYDINVAYTFEGLGLDWKAGLDTSIIDKYEEFDQDGVAVDYLG FITSGSGSYAKFKSNLNLTATGDDWSATYEARYIDGMDSFSCNDDPSECYAPSVDSVVYHDLSANYDLTSTVRLSGGVNN IFDEEPPYYSGNNDSNTDPYTYDVLGRFFFVRASVKF
Sequences:
>Translated_917_residues MSSVTLTAKAVRRSLIAAAATSVALSGFVFAEEATADNSAENKVERIQVTGSRIKRADMESASPVTVIDASAIIASGATS IDDVLQNMTVSGGAMTNAAVNNGSGGNAHVNLRGLGTNRTLVLVNGRRMIASGTGAASSVDLNTIPVSMIQRVEVLKDGA SAVYGTDAIAGVVNVILKRDFEGFEMNVQTGVTGQGDADESSVDFTIGNTFEKGNVVINAQYTKRGEASQADRSFSECPI TETSDGSELYCGGSSYSEGGHIWGDSHHDLVGSGEDGAYEIGDSGYYGHYVAGDDGKATFEYHDENVTEANLSGRGGEYH DFTNEDKYNYSEDSYLSTPMERLNLSFSGTYELSDSILFFSEAMYSKRWSEQQMAPQPIWNSTAWAYDSTWMTDDLVGLV QEGEMLDYGRRVVESGTRNFSQVVDTVRLVVGLEGEFDNGWTWDASYNKGKNDSVDTLANLHNLGSINDAVLAKEFDPFS QESWVGESIEPFIYTEINSGGSELDVIAATLSGEIMDLPAGTLGFAAGYEYRKESAHYTPDSLTSQGLANDPRQEATAGS FDVNEVYAELAIPLLSDLPMAEQVDLSAAIRYFDYSTFGSDSTWKLGLTWRVIDDLMLRGVMSTAFRAPTVSELYGGKSP SFDQIKHAATEQTQAEVTVGGNPDLTPEEADITTLGLVYSPSFVEGLSLTLDYYNIEITNTITAVDSNYIANQCMDATGN KINNDTALCQSANIAIDGTGRISFDNGLQNLGQTNTAGYDINVAYTFEGLGLDWKAGLDTSIIDKYEEFDQDGVAVDYLG FITSGSGSYAKFKSNLNLTATGDDWSATYEARYIDGMDSFSCNDDPSECYAPSVDSVVYHDLSANYDLTSTVRLSGGVNN IFDEEPPYYSGNNDSNTDPYTYDVLGRFFFVRASVKF >Mature_916_residues SSVTLTAKAVRRSLIAAAATSVALSGFVFAEEATADNSAENKVERIQVTGSRIKRADMESASPVTVIDASAIIASGATSI DDVLQNMTVSGGAMTNAAVNNGSGGNAHVNLRGLGTNRTLVLVNGRRMIASGTGAASSVDLNTIPVSMIQRVEVLKDGAS AVYGTDAIAGVVNVILKRDFEGFEMNVQTGVTGQGDADESSVDFTIGNTFEKGNVVINAQYTKRGEASQADRSFSECPIT ETSDGSELYCGGSSYSEGGHIWGDSHHDLVGSGEDGAYEIGDSGYYGHYVAGDDGKATFEYHDENVTEANLSGRGGEYHD FTNEDKYNYSEDSYLSTPMERLNLSFSGTYELSDSILFFSEAMYSKRWSEQQMAPQPIWNSTAWAYDSTWMTDDLVGLVQ EGEMLDYGRRVVESGTRNFSQVVDTVRLVVGLEGEFDNGWTWDASYNKGKNDSVDTLANLHNLGSINDAVLAKEFDPFSQ ESWVGESIEPFIYTEINSGGSELDVIAATLSGEIMDLPAGTLGFAAGYEYRKESAHYTPDSLTSQGLANDPRQEATAGSF DVNEVYAELAIPLLSDLPMAEQVDLSAAIRYFDYSTFGSDSTWKLGLTWRVIDDLMLRGVMSTAFRAPTVSELYGGKSPS FDQIKHAATEQTQAEVTVGGNPDLTPEEADITTLGLVYSPSFVEGLSLTLDYYNIEITNTITAVDSNYIANQCMDATGNK INNDTALCQSANIAIDGTGRISFDNGLQNLGQTNTAGYDINVAYTFEGLGLDWKAGLDTSIIDKYEEFDQDGVAVDYLGF ITSGSGSYAKFKSNLNLTATGDDWSATYEARYIDGMDSFSCNDDPSECYAPSVDSVVYHDLSANYDLTSTVRLSGGVNNI FDEEPPYYSGNNDSNTDPYTYDVLGRFFFVRASVKF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=177, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=4e-18, Organism=Escherichia coli, GI1788478, Length=157, Percent_Identity=31.2101910828025, Blast_Score=74, Evalue=5e-14,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 98958; Mature: 98826
Theoretical pI: Translated: 3.96; Mature: 3.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSVTLTAKAVRRSLIAAAATSVALSGFVFAEEATADNSAENKVERIQVTGSRIKRADME CCCEEEHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHCCEEEEEECHHHHHHCCCC SASPVTVIDASAIIASGATSIDDVLQNMTVSGGAMTNAAVNNGSGGNAHVNLRGLGTNRT CCCCEEEEECHHHHHCCCCHHHHHHHCCCCCCCCEECCEECCCCCCEEEEEEEEECCCCE LVLVNGRRMIASGTGAASSVDLNTIPVSMIQRVEVLKDGASAVYGTDAIAGVVNVILKRD EEEECCCEEEEECCCCCCEEECCCCCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCC FEGFEMNVQTGVTGQGDADESSVDFTIGNTFEKGNVVINAQYTKRGEASQADRSFSECPI CCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHCCHHHCCC TETSDGSELYCGGSSYSEGGHIWGDSHHDLVGSGEDGAYEIGDSGYYGHYVAGDDGKATF CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCEEE EYHDENVTEANLSGRGGEYHDFTNEDKYNYSEDSYLSTPMERLNLSFSGTYELSDSILFF EECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHCCEEECEEECCCCEEHH SEAMYSKRWSEQQMAPQPIWNSTAWAYDSTWMTDDLVGLVQEGEMLDYGRRVVESGTRNF HHHHHHHHCCHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHH SQVVDTVRLVVGLEGEFDNGWTWDASYNKGKNDSVDTLANLHNLGSINDAVLAKEFDPFS HHHHHHHHEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHCCCCCC QESWVGESIEPFIYTEINSGGSELDVIAATLSGEIMDLPAGTLGFAAGYEYRKESAHYTP CCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCEEECCCCHHHHHCCCHHHHCCCCCCC DSLTSQGLANDPRQEATAGSFDVNEVYAELAIPLLSDLPMAEQVDLSAAIRYFDYSTFGS HHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHEEECCCCCC DSTWKLGLTWRVIDDLMLRGVMSTAFRAPTVSELYGGKSPSFDQIKHAATEQTQAEVTVG CCEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHCCCCCEEEEEC GNPDLTPEEADITTLGLVYSPSFVEGLSLTLDYYNIEITNTITAVDSNYIANQCMDATGN CCCCCCCCCCCEEEEEEEECCHHHCCEEEEEEEEEEEEEEEEEECCCCHHHHHHHHHCCC KINNDTALCQSANIAIDGTGRISFDNGLQNLGQTNTAGYDINVAYTFEGLGLDWKAGLDT CCCCCHHHEECCCEEEECCCEEEECHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCH SIIDKYEEFDQDGVAVDYLGFITSGSGSYAKFKSNLNLTATGDDWSATYEARYIDGMDSF HHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEECCCEEEECCCCCCCEEEEEEECCCCCC SCNDDPSECYAPSVDSVVYHDLSANYDLTSTVRLSGGVNNIFDEEPPYYSGNNDSNTDPY CCCCCHHHHCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE TYDVLGRFFFVRASVKF EHHHHHHEEEEEEEECC >Mature Secondary Structure SSVTLTAKAVRRSLIAAAATSVALSGFVFAEEATADNSAENKVERIQVTGSRIKRADME CCEEEHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHCCEEEEEECHHHHHHCCCC SASPVTVIDASAIIASGATSIDDVLQNMTVSGGAMTNAAVNNGSGGNAHVNLRGLGTNRT CCCCEEEEECHHHHHCCCCHHHHHHHCCCCCCCCEECCEECCCCCCEEEEEEEEECCCCE LVLVNGRRMIASGTGAASSVDLNTIPVSMIQRVEVLKDGASAVYGTDAIAGVVNVILKRD EEEECCCEEEEECCCCCCEEECCCCCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCC FEGFEMNVQTGVTGQGDADESSVDFTIGNTFEKGNVVINAQYTKRGEASQADRSFSECPI CCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHCCHHHCCC TETSDGSELYCGGSSYSEGGHIWGDSHHDLVGSGEDGAYEIGDSGYYGHYVAGDDGKATF CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCEEE EYHDENVTEANLSGRGGEYHDFTNEDKYNYSEDSYLSTPMERLNLSFSGTYELSDSILFF EECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHCCEEECEEECCCCEEHH SEAMYSKRWSEQQMAPQPIWNSTAWAYDSTWMTDDLVGLVQEGEMLDYGRRVVESGTRNF HHHHHHHHCCHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHH SQVVDTVRLVVGLEGEFDNGWTWDASYNKGKNDSVDTLANLHNLGSINDAVLAKEFDPFS HHHHHHHHEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHCCCCCC QESWVGESIEPFIYTEINSGGSELDVIAATLSGEIMDLPAGTLGFAAGYEYRKESAHYTP CCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCEEECCCCHHHHHCCCHHHHCCCCCCC DSLTSQGLANDPRQEATAGSFDVNEVYAELAIPLLSDLPMAEQVDLSAAIRYFDYSTFGS HHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHEEECCCCCC DSTWKLGLTWRVIDDLMLRGVMSTAFRAPTVSELYGGKSPSFDQIKHAATEQTQAEVTVG CCEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHCCCCCEEEEEC GNPDLTPEEADITTLGLVYSPSFVEGLSLTLDYYNIEITNTITAVDSNYIANQCMDATGN CCCCCCCCCCCEEEEEEEECCHHHCCEEEEEEEEEEEEEEEEEECCCCHHHHHHHHHCCC KINNDTALCQSANIAIDGTGRISFDNGLQNLGQTNTAGYDINVAYTFEGLGLDWKAGLDT CCCCCHHHEECCCEEEECCCEEEECHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCH SIIDKYEEFDQDGVAVDYLGFITSGSGSYAKFKSNLNLTATGDDWSATYEARYIDGMDSF HHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEECCCEEEECCCCCCCEEEEEEECCCCCC SCNDDPSECYAPSVDSVVYHDLSANYDLTSTVRLSGGVNNIFDEEPPYYSGNNDSNTDPY CCCCCHHHHCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE TYDVLGRFFFVRASVKF EHHHHHHEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA