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The map label for this gene is radC [C]

Identifier: 167622369

GI number: 167622369

Start: 504539

End: 505216

Strand: Direct

Name: radC [C]

Synonym: Shal_0429

Alternate gene names: 167622369

Gene position: 504539-505216 (Clockwise)

Preceding gene: 167622363

Following gene: 167622370

Centisome position: 9.65

GC content: 43.07

Gene sequence:

>678_bases
ATGGCGATAAAAGACTGGCCCGTTGGCGAAGGTCCACGAGAAAAATTATTAAATCAAGGGGTGAAGCAGCTATCGGATGC
TGAATTATTGGCTGTCTTGCTTAGAGTGGGTTTAAAAGGCTTAAGTGCTGTGGAGCTAGCTAGAACTATGATTAATGAGT
TTGGTGGCCTTAGAGGCCTTCTGGCAGCGTCTCAGACACAAGTTTGTCGCCTCGATGGGATAGGCCCTGTTAAGTTCGCG
CAAATGCAGGCTGCAGTGGAGTTAGGCACGCGAATTTCGCAAGAAAATCTACAAAGAGGAAAAATTTTATCTGATCCTGA
TTTAACTCGGGACTATTTAATGAGACAATTGTCTGATCGTGCTTACGAAGTGTTCGCTATTTTATTGTTAGATAGTCAAC
ATAGAGTGATTCAATTCGTTGAATTATTTAGGGGTACAATCAATTCAGCATCAGTTTATCCACGTGAAGTGGTAAGTTTA
GTGCTTGAAAAAAAGGCTGCGGCTGTGATCGTGTGTCACAATCACCCCTCAGGGATTGCAGAACCAAGTACAGCCGATAG
ACGAATTACTGAGCGATTGAAACAAGCCTTACAAACTATCGATGTTTCCTTGTTGGACCATATGGTTGTAGGCGATCGAG
AGATCGTTTCTTTTGCTGAACGGGGATGGATAGATTAA

Upstream 100 bases:

>100_bases
GCAGAGGTTGGGCCTAAGATATCACAAACCATAAAATGGTGATGAACAACTTCAGAAAATCTAGACCATACTCGAAGATA
AAATCAACAAGGAGGTTGTT

Downstream 100 bases:

>100_bases
TCTATCCCTTGATCTTTTATTTTAGATCCTGTATAAAATGCGCCCTCTGTTGTGTGCCTCAGGCGACGGCCGTGTTCGAG
GTGCATTAATGCTCGAGCGT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MAIKDWPVGEGPREKLLNQGVKQLSDAELLAVLLRVGLKGLSAVELARTMINEFGGLRGLLAASQTQVCRLDGIGPVKFA
QMQAAVELGTRISQENLQRGKILSDPDLTRDYLMRQLSDRAYEVFAILLLDSQHRVIQFVELFRGTINSASVYPREVVSL
VLEKKAAAVIVCHNHPSGIAEPSTADRRITERLKQALQTIDVSLLDHMVVGDREIVSFAERGWID

Sequences:

>Translated_225_residues
MAIKDWPVGEGPREKLLNQGVKQLSDAELLAVLLRVGLKGLSAVELARTMINEFGGLRGLLAASQTQVCRLDGIGPVKFA
QMQAAVELGTRISQENLQRGKILSDPDLTRDYLMRQLSDRAYEVFAILLLDSQHRVIQFVELFRGTINSASVYPREVVSL
VLEKKAAAVIVCHNHPSGIAEPSTADRRITERLKQALQTIDVSLLDHMVVGDREIVSFAERGWID
>Mature_224_residues
AIKDWPVGEGPREKLLNQGVKQLSDAELLAVLLRVGLKGLSAVELARTMINEFGGLRGLLAASQTQVCRLDGIGPVKFAQ
MQAAVELGTRISQENLQRGKILSDPDLTRDYLMRQLSDRAYEVFAILLLDSQHRVIQFVELFRGTINSASVYPREVVSLV
LEKKAAAVIVCHNHPSGIAEPSTADRRITERLKQALQTIDVSLLDHMVVGDREIVSFAERGWID

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=46.0093896713615, Blast_Score=205, Evalue=2e-54,
Organism=Escherichia coli, GI1788997, Length=127, Percent_Identity=44.8818897637795, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI2367100, Length=125, Percent_Identity=44.8, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788312, Length=125, Percent_Identity=43.2, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 24911; Mature: 24780

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIKDWPVGEGPREKLLNQGVKQLSDAELLAVLLRVGLKGLSAVELARTMINEFGGLRGL
CCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHH
LAASQTQVCRLDGIGPVKFAQMQAAVELGTRISQENLQRGKILSDPDLTRDYLMRQLSDR
HHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCHHHHHHHHHHHHH
AYEVFAILLLDSQHRVIQFVELFRGTINSASVYPREVVSLVLEKKAAAVIVCHNHPSGIA
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC
EPSTADRRITERLKQALQTIDVSLLDHMVVGDREIVSFAERGWID
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure 
AIKDWPVGEGPREKLLNQGVKQLSDAELLAVLLRVGLKGLSAVELARTMINEFGGLRGL
CCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHH
LAASQTQVCRLDGIGPVKFAQMQAAVELGTRISQENLQRGKILSDPDLTRDYLMRQLSDR
HHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCHHHHHHHHHHHHH
AYEVFAILLLDSQHRVIQFVELFRGTINSASVYPREVVSLVLEKKAAAVIVCHNHPSGIA
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC
EPSTADRRITERLKQALQTIDVSLLDHMVVGDREIVSFAERGWID
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA