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The map label for this gene is nadB [C]

Identifier: 167622272

GI number: 167622272

Start: 394704

End: 396224

Strand: Direct

Name: nadB [C]

Synonym: Shal_0331

Alternate gene names: 167622272

Gene position: 394704-396224 (Clockwise)

Preceding gene: 167622270

Following gene: 167622273

Centisome position: 7.55

GC content: 47.73

Gene sequence:

>1521_bases
ATGAGTAATAACAATCTGCTAGGACGCCGTAATTTCATTAAAGGAATGGGAGCGGCAGCAGGTGTCGCAATGGCTGCACC
AGCACTCGCCATTTCTGAGAAAGCGGATGGCGTTAAATGGGACCAACAAGTTGAAGTTCTAATTATCGGTTCGGGTTTTG
CGGGATTAGCGGCGGCGATTGAAGCTACGCGTAAAGGCGCAAAAGATGTTCATATTTATGAGAAAATGTCATATTTTGGT
GGCAACTCAGCAATCAATGGTGGCCTGTTTGCGGCTCCAGACACACCAATGCAAAAGACTGAAGGCGTTAAGGATTCAGT
CGACACTATGGTTGCCGATCAGCTAGCCGCGGGTCGCGGTATTGCCGACGAAGCACTACTTCGCCATGTTGCTGAGCACG
CTGTAGAAGCACTGCAGATGACATTAGATGCGGGTTCTGAATATCACCCATATCTACAGCAGTTAGGTGGCCACTCAGTT
GCACGTACCTACCAAACTACAGTGAGCTGTGGCGCGGGTATTACTCAGCCATTGCTACAAGAGTGTCGTAAATTAGGCGT
TCATACTCATAACCGCGCTAAGTTCGAAGGTTTCTTAGTGGGTGATAAGGGTGAAGTGGTTGGCGTTAAAATGCGTCAAA
ACTATCACTTCGGTGAAGACCAACCAGGTGAAGTCATTAATATCCGTGCTAAGCGCGGTGTGATTATGGCTACCGGCGGT
TTCGCGCAAAACGTTAACTTACGTATGGCGCAAGACCCAACTCTTACCGCTGAAGTGGGCTGTACTAACGCACCAGGCGC
TACGGGTGAAGGTATGTACGAAATGTTCCGTCTAGGGGCAATTCCAGTGCATCTTGCACATATTCAATCAGGTCCCTGGG
CATCACCTGATGAAGGTGGTTTTGGTTACGTGTCTAATTACTCAATCTACAATTTCCCGCATTCAGTGGCGATTGACCGT
TTAACCGGTAAGCGTTTCATGAATGAAATTGCTGACCGTAAGACTCGCGCCGATGCTGAGTTGAACTGTCGCGACGCACA
AGGAAATGCCCTACCTCCAATTTTGATCACTAGCTACAAGGATTCTAAGAAGCATCCGAATACCAAGAAAGTGATCAAGT
ACAACGTAGGTTGGAAGTTTGACTCAGTTGAGGCGTTAGCTAAACACTTTGATGTGCCATTAGCACCGCTAAAAGCACAA
ATTGCTGAGTACAACGAGTACGTTAAGGCTCAAAATGACCCTCAGTTTGGCAAGAACATGACCGAAGCCAAAGACAAGTA
TATCGAAGCACCATTTACCGTAGTTCGCTTATGGCCAAAAGTGCACTACTGCCAAGGTGGTGTACAGATCAACACTAATG
CTGAAGTGAAAGACAGCTTTACGGGCCAGGCGATTCCAGGTCTATATGCAGCGGGCGAAGTGTGTGGTGGTATTCATGGT
GTGAGCCGTTTGGGTAGTTGCTCAATTCCTGAATGCATGGTGATGGGTATGACTGCTGCACGCAGCATGATGAAAGCCTA
A

Upstream 100 bases:

>100_bases
TATTTTATTGTTTTAAATGAATCCTTATGTAACTCCCGTTTTGGAACTGATTCCAGCCCTATGATTGTTGCGTCTAATAA
AACTAATAGGGTGATGACAG

Downstream 100 bases:

>100_bases
ATTTGCCAGATAATAAGAGGAATGAGTGATGATTAATTTAAAAGCGGTATTAGCGCTAACCTTTGGTTGCTTTCTAAGCC
TATCAGCCCAAGCTGTGGAG

Product: flavocytochrome c

Products: NA

Alternate protein names: Flavocytochrome c; FL cyt [H]

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MSNNNLLGRRNFIKGMGAAAGVAMAAPALAISEKADGVKWDQQVEVLIIGSGFAGLAAAIEATRKGAKDVHIYEKMSYFG
GNSAINGGLFAAPDTPMQKTEGVKDSVDTMVADQLAAGRGIADEALLRHVAEHAVEALQMTLDAGSEYHPYLQQLGGHSV
ARTYQTTVSCGAGITQPLLQECRKLGVHTHNRAKFEGFLVGDKGEVVGVKMRQNYHFGEDQPGEVINIRAKRGVIMATGG
FAQNVNLRMAQDPTLTAEVGCTNAPGATGEGMYEMFRLGAIPVHLAHIQSGPWASPDEGGFGYVSNYSIYNFPHSVAIDR
LTGKRFMNEIADRKTRADAELNCRDAQGNALPPILITSYKDSKKHPNTKKVIKYNVGWKFDSVEALAKHFDVPLAPLKAQ
IAEYNEYVKAQNDPQFGKNMTEAKDKYIEAPFTVVRLWPKVHYCQGGVQINTNAEVKDSFTGQAIPGLYAAGEVCGGIHG
VSRLGSCSIPECMVMGMTAARSMMKA

Sequences:

>Translated_506_residues
MSNNNLLGRRNFIKGMGAAAGVAMAAPALAISEKADGVKWDQQVEVLIIGSGFAGLAAAIEATRKGAKDVHIYEKMSYFG
GNSAINGGLFAAPDTPMQKTEGVKDSVDTMVADQLAAGRGIADEALLRHVAEHAVEALQMTLDAGSEYHPYLQQLGGHSV
ARTYQTTVSCGAGITQPLLQECRKLGVHTHNRAKFEGFLVGDKGEVVGVKMRQNYHFGEDQPGEVINIRAKRGVIMATGG
FAQNVNLRMAQDPTLTAEVGCTNAPGATGEGMYEMFRLGAIPVHLAHIQSGPWASPDEGGFGYVSNYSIYNFPHSVAIDR
LTGKRFMNEIADRKTRADAELNCRDAQGNALPPILITSYKDSKKHPNTKKVIKYNVGWKFDSVEALAKHFDVPLAPLKAQ
IAEYNEYVKAQNDPQFGKNMTEAKDKYIEAPFTVVRLWPKVHYCQGGVQINTNAEVKDSFTGQAIPGLYAAGEVCGGIHG
VSRLGSCSIPECMVMGMTAARSMMKA
>Mature_505_residues
SNNNLLGRRNFIKGMGAAAGVAMAAPALAISEKADGVKWDQQVEVLIIGSGFAGLAAAIEATRKGAKDVHIYEKMSYFGG
NSAINGGLFAAPDTPMQKTEGVKDSVDTMVADQLAAGRGIADEALLRHVAEHAVEALQMTLDAGSEYHPYLQQLGGHSVA
RTYQTTVSCGAGITQPLLQECRKLGVHTHNRAKFEGFLVGDKGEVVGVKMRQNYHFGEDQPGEVINIRAKRGVIMATGGF
AQNVNLRMAQDPTLTAEVGCTNAPGATGEGMYEMFRLGAIPVHLAHIQSGPWASPDEGGFGYVSNYSIYNFPHSVAIDRL
TGKRFMNEIADRKTRADAELNCRDAQGNALPPILITSYKDSKKHPNTKKVIKYNVGWKFDSVEALAKHFDVPLAPLKAQI
AEYNEYVKAQNDPQFGKNMTEAKDKYIEAPFTVVRLWPKVHYCQGGVQINTNAEVKDSFTGQAIPGLYAAGEVCGGIHGV
SRLGSCSIPECMVMGMTAARSMMKA

Specific function: Catalyzes fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown, but evidence indicates that flavocytochrome c participates in electron transfer from formate to fumarate and possibly also to tr

COG id: COG1053

COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI71986328, Length=470, Percent_Identity=27.8723404255319, Blast_Score=105, Evalue=5e-23,
Organism=Saccharomyces cerevisiae, GI6320788, Length=489, Percent_Identity=28.4253578732106, Blast_Score=138, Evalue=2e-33,
Organism=Saccharomyces cerevisiae, GI6322511, Length=478, Percent_Identity=26.3598326359833, Blast_Score=129, Evalue=9e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003953
- InterPro:   IPR013027
- InterPro:   IPR010960
- InterPro:   IPR011031
- InterPro:   IPR012286 [H]

Pfam domain/function: PF00890 FAD_binding_2 [H]

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 54501; Mature: 54370

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNNNLLGRRNFIKGMGAAAGVAMAAPALAISEKADGVKWDQQVEVLIIGSGFAGLAAAI
CCCCCCCCHHHHHHHCCHHHHHHHHCCHHHHHCCCCCCCCCCEEEEEEEECCHHHHHHHH
EATRKGAKDVHIYEKMSYFGGNSAINGGLFAAPDTPMQKTEGVKDSVDTMVADQLAAGRG
HHHHCCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHCCCHHHHHHHHHHHHHHCCC
IADEALLRHVAEHAVEALQMTLDAGSEYHPYLQQLGGHSVARTYQTTVSCGAGITQPLLQ
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHH
ECRKLGVHTHNRAKFEGFLVGDKGEVVGVKMRQNYHFGEDQPGEVINIRAKRGVIMATGG
HHHHHCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECC
FAQNVNLRMAQDPTLTAEVGCTNAPGATGEGMYEMFRLGAIPVHLAHIQSGPWASPDEGG
CEECCEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC
FGYVSNYSIYNFPHSVAIDRLTGKRFMNEIADRKTRADAELNCRDAQGNALPPILITSYK
CCEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEECCC
DSKKHPNTKKVIKYNVGWKFDSVEALAKHFDVPLAPLKAQIAEYNEYVKAQNDPQFGKNM
CCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCH
TEAKDKYIEAPFTVVRLWPKVHYCQGGVQINTNAEVKDSFTGQAIPGLYAAGEVCGGIHG
HHHHHHHHCCCEEEEECCCHHEEECCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
VSRLGSCSIPECMVMGMTAARSMMKA
HHHCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNNNLLGRRNFIKGMGAAAGVAMAAPALAISEKADGVKWDQQVEVLIIGSGFAGLAAAI
CCCCCCCHHHHHHHCCHHHHHHHHCCHHHHHCCCCCCCCCCEEEEEEEECCHHHHHHHH
EATRKGAKDVHIYEKMSYFGGNSAINGGLFAAPDTPMQKTEGVKDSVDTMVADQLAAGRG
HHHHCCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHCCCHHHHHHHHHHHHHHCCC
IADEALLRHVAEHAVEALQMTLDAGSEYHPYLQQLGGHSVARTYQTTVSCGAGITQPLLQ
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHH
ECRKLGVHTHNRAKFEGFLVGDKGEVVGVKMRQNYHFGEDQPGEVINIRAKRGVIMATGG
HHHHHCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECC
FAQNVNLRMAQDPTLTAEVGCTNAPGATGEGMYEMFRLGAIPVHLAHIQSGPWASPDEGG
CEECCEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC
FGYVSNYSIYNFPHSVAIDRLTGKRFMNEIADRKTRADAELNCRDAQGNALPPILITSYK
CCEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEECCC
DSKKHPNTKKVIKYNVGWKFDSVEALAKHFDVPLAPLKAQIAEYNEYVKAQNDPQFGKNM
CCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCH
TEAKDKYIEAPFTVVRLWPKVHYCQGGVQINTNAEVKDSFTGQAIPGLYAAGEVCGGIHG
HHHHHHHHCCCEEEEECCCHHEEECCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
VSRLGSCSIPECMVMGMTAARSMMKA
HHHCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11425747; 12368813; 10581551 [H]