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The map label for this gene is yjjW [H]

Identifier: 167622267

GI number: 167622267

Start: 387341

End: 388234

Strand: Reverse

Name: yjjW [H]

Synonym: Shal_0326

Alternate gene names: 167622267

Gene position: 388234-387341 (Counterclockwise)

Preceding gene: 167622268

Following gene: 167622262

Centisome position: 7.43

GC content: 48.77

Gene sequence:

>894_bases
ATGGTCAGAGTCGCCACGGTTAACCAGATTATTCCCTTCTCTTGTGTCGATGGTCCAGGCAGTCGCTTGGTCATCTTCCT
GCAAGGGTGTAATTTTAACTGCAAAAATTGTCACAACCCGCACACCATAGATATGTGTGACAGTTGCGGCGACTGTGTGG
CTACCTGCCCTGTGGGCGCGCTAAGTCTTTCACTATCTGAAGTAACTGAAGCCGTAATAACAAAACCAAGAGTCCTGTGG
GACAGTGACAAATGCACCCAGTGCGATACTTGCTTATCGACTTGTCCTAAGCAATCTAGTCCTAAGACTCGCCAATACAG
TGTGCCGCAGATGCTGGAATTGATCCGCAGCCAAGTGCACTTTATCAACGGCATCACCGTCAGCGGCGGTGAAGCCACCT
TGCAACTGCCGTTTATCATAGAGCTGTTTCAAGCGATAAAAGCCAGCCCAGATTTGAAACATCTAAGCTGCATGATCGAC
AGTAATGGCTATTTATCTGAAAGCGGCTGGGAACAGGTGATGCCCTACCTAGATGGCGCAATGATCGATCTTAAATCCTG
GCAACAACACACCCACCACTACATCACAGGCCGTGATAACCACCGGGTATTTATTAGTTTAAAGTTACTCGCCGCAGAGG
GAAAGTTATACGAAATACGCCTACTGTATATTCCGAGAGTAAGTGATTTTGACAATGAGATTAACGCCGTTGCAGGCTAT
TTAAGCCAGCTACCCGCAAGCGTAAGAGTCAAACTCAACGCCTTCCAACACCACGGGGTAACAGGCGAAGCCCGCCAATG
GGGCACTTGCAGTGAGCAGCAGATGCAGCAGTTAGCCGCACAGTTGTCGCAGCGTGGAGTGCGTAACTTGGTGTTACCCA
ATGTTTATTTGTAG

Upstream 100 bases:

>100_bases
CACGGGTCATTGCTCATGAGCAATCACCTACACACGCTAAATAGCCGTCAAATAACCTATTAGACTGATCGAGTAGAGAA
AGTAAGGATTAAGATAAAAG

Downstream 100 bases:

>100_bases
GCGTTCTTGCCAACCGAATGGGGGCGCTTTGTGGTAAAGCGGTGAACCTTTCTCTTACCATTTCACAGGTAGTATTTGCT
GTATCTTCCAGCATCAGTGG

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MVRVATVNQIIPFSCVDGPGSRLVIFLQGCNFNCKNCHNPHTIDMCDSCGDCVATCPVGALSLSLSEVTEAVITKPRVLW
DSDKCTQCDTCLSTCPKQSSPKTRQYSVPQMLELIRSQVHFINGITVSGGEATLQLPFIIELFQAIKASPDLKHLSCMID
SNGYLSESGWEQVMPYLDGAMIDLKSWQQHTHHYITGRDNHRVFISLKLLAAEGKLYEIRLLYIPRVSDFDNEINAVAGY
LSQLPASVRVKLNAFQHHGVTGEARQWGTCSEQQMQQLAAQLSQRGVRNLVLPNVYL

Sequences:

>Translated_297_residues
MVRVATVNQIIPFSCVDGPGSRLVIFLQGCNFNCKNCHNPHTIDMCDSCGDCVATCPVGALSLSLSEVTEAVITKPRVLW
DSDKCTQCDTCLSTCPKQSSPKTRQYSVPQMLELIRSQVHFINGITVSGGEATLQLPFIIELFQAIKASPDLKHLSCMID
SNGYLSESGWEQVMPYLDGAMIDLKSWQQHTHHYITGRDNHRVFISLKLLAAEGKLYEIRLLYIPRVSDFDNEINAVAGY
LSQLPASVRVKLNAFQHHGVTGEARQWGTCSEQQMQQLAAQLSQRGVRNLVLPNVYL
>Mature_297_residues
MVRVATVNQIIPFSCVDGPGSRLVIFLQGCNFNCKNCHNPHTIDMCDSCGDCVATCPVGALSLSLSEVTEAVITKPRVLW
DSDKCTQCDTCLSTCPKQSSPKTRQYSVPQMLELIRSQVHFINGITVSGGEATLQLPFIIELFQAIKASPDLKHLSCMID
SNGYLSESGWEQVMPYLDGAMIDLKSWQQHTHHYITGRDNHRVFISLKLLAAEGKLYEIRLLYIPRVSDFDNEINAVAGY
LSQLPASVRVKLNAFQHHGVTGEARQWGTCSEQQMQQLAAQLSQRGVRNLVLPNVYL

Specific function: Unknown

COG id: COG1180

COG function: function code O; Pyruvate-formate lyase-activating enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1790839, Length=295, Percent_Identity=50.5084745762712, Blast_Score=312, Evalue=2e-86,
Organism=Escherichia coli, GI1787130, Length=265, Percent_Identity=23.3962264150943, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR011352
- InterPro:   IPR001989
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 33015; Mature: 33015

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: PS01087 RADICAL_ACTIVATING ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRVATVNQIIPFSCVDGPGSRLVIFLQGCNFNCKNCHNPHTIDMCDSCGDCVATCPVGA
CEEEEECCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCEECHHHCCCCHHHHCCCHH
LSLSLSEVTEAVITKPRVLWDSDKCTQCDTCLSTCPKQSSPKTRQYSVPQMLELIRSQVH
HHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
FINGITVSGGEATLQLPFIIELFQAIKASPDLKHLSCMIDSNGYLSESGWEQVMPYLDGA
HHCCEEECCCCEEEEHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCC
MIDLKSWQQHTHHYITGRDNHRVFISLKLLAAEGKLYEIRLLYIPRVSDFDNEINAVAGY
EEEHHHHHHHCCEEEECCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHHH
LSQLPASVRVKLNAFQHHGVTGEARQWGTCSEQQMQQLAAQLSQRGVRNLVLPNVYL
HHHCCCEEEEEEEEHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCC
>Mature Secondary Structure
MVRVATVNQIIPFSCVDGPGSRLVIFLQGCNFNCKNCHNPHTIDMCDSCGDCVATCPVGA
CEEEEECCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCEECHHHCCCCHHHHCCCHH
LSLSLSEVTEAVITKPRVLWDSDKCTQCDTCLSTCPKQSSPKTRQYSVPQMLELIRSQVH
HHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
FINGITVSGGEATLQLPFIIELFQAIKASPDLKHLSCMIDSNGYLSESGWEQVMPYLDGA
HHCCEEECCCCEEEEHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCC
MIDLKSWQQHTHHYITGRDNHRVFISLKLLAAEGKLYEIRLLYIPRVSDFDNEINAVAGY
EEEHHHHHHHCCEEEECCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHHH
LSQLPASVRVKLNAFQHHGVTGEARQWGTCSEQQMQQLAAQLSQRGVRNLVLPNVYL
HHHCCCEEEEEEEEHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]