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The map label for this gene is yidZ [H]

Identifier: 167622252

GI number: 167622252

Start: 369540

End: 370508

Strand: Reverse

Name: yidZ [H]

Synonym: Shal_0311

Alternate gene names: 167622252

Gene position: 370508-369540 (Counterclockwise)

Preceding gene: 167622255

Following gene: 167622251

Centisome position: 7.09

GC content: 50.26

Gene sequence:

>969_bases
TTGAAACTTGAAAACCTTGCGCGTATCGATCTAAACCTATTGGTTATCTTACAAGTGTTATTAGAAGAGCAGAGCGTCAC
TCGTGCGGCCAACCGCCTGCATGTCAGTCAGTCGGCCCTGAGCAAGAGTTTAAACCGTTTAAGAGAAACCCTAGGGGATC
CTCTTTTCTTGCGCACCGCTCACGGGCTTAAGCCGACCGCTCATGCTGTACAGTTGGGCAAAATCCTGCCACAGAGCTTG
CTGAGCTTGTATCAACTGACACTGCCACCCAGCTTTACGCCCGGTAACAGCACGCGTCAGTTTTCATTTGCCATGGTAGA
GAGCGCCTACGAAACATTGATCCCTTATTTTATTGGCACTCTGCTCAATCGAGCACCCAACCTTAAGCTAGATAGCTTTG
TCTGGAGCGAAAACTCGATTCAGGCGATTCAACAGGGACAGATTGATTTCGGTATTGCTGGGCGTGATCTACACCCACAA
TCGGCCTTTCAAGTAAACCGATTACCCGAAGGCATCGCTCACCAAACCCTATTTACCGATCATCAGGTGTGCTTAGTGCG
CCAGAAGCACCCTATGCTCTCGACGATAGCTGCAGGCCATTGGGATCTGAGTGTTTATTTAGAGATGTCCCATGTACAGG
TGCGCTGTGAAGGCAATGATTGGTGGGCGTTGGACTATCATCTGGCCGAATTAGGCCATCACCGCCGTCTGAGCACTATC
GTGCCCGATTTCTATGGCGCCGCCAGTGTTTGCGCCCATAGCGATCTGATCTTTACCCTACCAGCCAGCTTTGCCCAACA
TGCTAAGAAGCTTTACCCTTTAGTTGAATTGCCTCTACCAATTGAGTTCATCCCACAGGCTTACGTCCTGCTGTGGCATG
AGCGTAACGCCGACGAACCGGGGCATAGATGGGTAAAAGAGATCATCTGCGAGAGCGTGGCCAAGGCTCTTTCTAGCAAC
AAAAGTTAA

Upstream 100 bases:

>100_bases
GATCTTTCTCAGAATAAGGAAAACAGCGCTATAGTAATCAAACTATGGTATGAACAGAAATGATATTATTTCCATAACGA
ATTTCCATTGAGGAATATCT

Downstream 100 bases:

>100_bases
TACCGCCGATTAAGATGAAGCTTTATTAACGTGATCTCCGTTTAAATATTCGGCAAGATAATATTCAACAGTTAGCCTTG
ACGAACAAAAGACCAAGCCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MKLENLARIDLNLLVILQVLLEEQSVTRAANRLHVSQSALSKSLNRLRETLGDPLFLRTAHGLKPTAHAVQLGKILPQSL
LSLYQLTLPPSFTPGNSTRQFSFAMVESAYETLIPYFIGTLLNRAPNLKLDSFVWSENSIQAIQQGQIDFGIAGRDLHPQ
SAFQVNRLPEGIAHQTLFTDHQVCLVRQKHPMLSTIAAGHWDLSVYLEMSHVQVRCEGNDWWALDYHLAELGHHRRLSTI
VPDFYGAASVCAHSDLIFTLPASFAQHAKKLYPLVELPLPIEFIPQAYVLLWHERNADEPGHRWVKEIICESVAKALSSN
KS

Sequences:

>Translated_322_residues
MKLENLARIDLNLLVILQVLLEEQSVTRAANRLHVSQSALSKSLNRLRETLGDPLFLRTAHGLKPTAHAVQLGKILPQSL
LSLYQLTLPPSFTPGNSTRQFSFAMVESAYETLIPYFIGTLLNRAPNLKLDSFVWSENSIQAIQQGQIDFGIAGRDLHPQ
SAFQVNRLPEGIAHQTLFTDHQVCLVRQKHPMLSTIAAGHWDLSVYLEMSHVQVRCEGNDWWALDYHLAELGHHRRLSTI
VPDFYGAASVCAHSDLIFTLPASFAQHAKKLYPLVELPLPIEFIPQAYVLLWHERNADEPGHRWVKEIICESVAKALSSN
KS
>Mature_322_residues
MKLENLARIDLNLLVILQVLLEEQSVTRAANRLHVSQSALSKSLNRLRETLGDPLFLRTAHGLKPTAHAVQLGKILPQSL
LSLYQLTLPPSFTPGNSTRQFSFAMVESAYETLIPYFIGTLLNRAPNLKLDSFVWSENSIQAIQQGQIDFGIAGRDLHPQ
SAFQVNRLPEGIAHQTLFTDHQVCLVRQKHPMLSTIAAGHWDLSVYLEMSHVQVRCEGNDWWALDYHLAELGHHRRLSTI
VPDFYGAASVCAHSDLIFTLPASFAQHAKKLYPLVELPLPIEFIPQAYVLLWHERNADEPGHRWVKEIICESVAKALSSN
KS

Specific function: Involved in anaerobic NO protection [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=298, Percent_Identity=32.5503355704698, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI87081766, Length=276, Percent_Identity=28.2608695652174, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87081684, Length=309, Percent_Identity=27.5080906148867, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1786820, Length=84, Percent_Identity=40.4761904761905, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36230; Mature: 36230

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLENLARIDLNLLVILQVLLEEQSVTRAANRLHVSQSALSKSLNRLRETLGDPLFLRTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
HGLKPTAHAVQLGKILPQSLLSLYQLTLPPSFTPGNSTRQFSFAMVESAYETLIPYFIGT
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LLNRAPNLKLDSFVWSENSIQAIQQGQIDFGIAGRDLHPQSAFQVNRLPEGIAHQTLFTD
HHCCCCCCEEHHEEECCCHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCHHHHHHHHCC
HQVCLVRQKHPMLSTIAAGHWDLSVYLEMSHVQVRCEGNDWWALDYHLAELGHHRRLSTI
CCEEEEECCCCHHHHHHCCCCEEEEEEEEEEEEEEECCCCEEEEHHHHHHHCCHHHHHHH
VPDFYGAASVCAHSDLIFTLPASFAQHAKKLYPLVELPLPIEFIPQAYVLLWHERNADEP
CCCCCCHHHHHHCCCEEEECCHHHHHHHHHHCCHHCCCCCHHHCCCEEEEEEECCCCCCH
GHRWVKEIICESVAKALSSNKS
HHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKLENLARIDLNLLVILQVLLEEQSVTRAANRLHVSQSALSKSLNRLRETLGDPLFLRTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
HGLKPTAHAVQLGKILPQSLLSLYQLTLPPSFTPGNSTRQFSFAMVESAYETLIPYFIGT
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LLNRAPNLKLDSFVWSENSIQAIQQGQIDFGIAGRDLHPQSAFQVNRLPEGIAHQTLFTD
HHCCCCCCEEHHEEECCCHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCHHHHHHHHCC
HQVCLVRQKHPMLSTIAAGHWDLSVYLEMSHVQVRCEGNDWWALDYHLAELGHHRRLSTI
CCEEEEECCCCHHHHHHCCCCEEEEEEEEEEEEEEECCCCEEEEHHHHHHHCCHHHHHHH
VPDFYGAASVCAHSDLIFTLPASFAQHAKKLYPLVELPLPIEFIPQAYVLLWHERNADEP
CCCCCCHHHHHHCCCEEEECCHHHHHHHHHHCCHHCCCCCHHHCCCEEEEEEECCCCCCH
GHRWVKEIICESVAKALSSNKS
HHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA