Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
---|---|
Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is cctA [H]
Identifier: 167622245
GI number: 167622245
Start: 363500
End: 363790
Strand: Direct
Name: cctA [H]
Synonym: Shal_0304
Alternate gene names: 167622245
Gene position: 363500-363790 (Clockwise)
Preceding gene: 167622244
Following gene: 167622248
Centisome position: 6.95
GC content: 45.7
Gene sequence:
>291_bases ATGCTTAAAGTTTTAGGGTTAACAGTTTTATTGAGCTTTTCTGGTGCTGCAATGGCGACTTCAGTTGCTGATTCGCATAC TGAGATGGCAGGTTGTGAGTCATGTCATCAAGATGGTGCGCCATCGGCGGATATGGCATATGAGAATGAAACCTGTGTGA GCTGTCATGGTTCATTGAAAGACCTTGATGGTGAAATGCATCAGCAGCATGACGGTATCATCACTTGTAGTGATTGCCAT GTTGTGCACGGGGAGGCTTCGGCTAACGATAGTTGTGCAAGCTGTCACTAA
Upstream 100 bases:
>100_bases TACAGCTAGCTGCAGTTTAATCGGCGTGCTGTTACTGCGTAATTTCATTCTTTATACCGGCCAAATGACGGTTGCTTAAT TATTTACTGAGGGTTTGGAT
Downstream 100 bases:
>100_bases TCTTCATATAAGAAATTAAGCAAAAGAGTCGTAAAAAACTACTCCATGCTTCGCAGGGACGCTTCTGGGCAGGATGCCTT ATTTAGCAACTTAGTGGTTA
Product: hypothetical protein
Products: NA
Alternate protein names: Cytochrome c3 [H]
Number of amino acids: Translated: 96; Mature: 96
Protein sequence:
>96_residues MLKVLGLTVLLSFSGAAMATSVADSHTEMAGCESCHQDGAPSADMAYENETCVSCHGSLKDLDGEMHQQHDGIITCSDCH VVHGEASANDSCASCH
Sequences:
>Translated_96_residues MLKVLGLTVLLSFSGAAMATSVADSHTEMAGCESCHQDGAPSADMAYENETCVSCHGSLKDLDGEMHQQHDGIITCSDCH VVHGEASANDSCASCH >Mature_96_residues MLKVLGLTVLLSFSGAAMATSVADSHTEMAGCESCHQDGAPSADMAYENETCVSCHGSLKDLDGEMHQQHDGIITCSDCH VVHGEASANDSCASCH
Specific function: Transfers electrons to ferredoxin III [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011031 - InterPro: IPR012286 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9970; Mature: 9970
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
8.3 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 13.5 %Cys+Met (Translated Protein) 8.3 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 13.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKVLGLTVLLSFSGAAMATSVADSHTEMAGCESCHQDGAPSADMAYENETCVSCHGSLK CCCHHEEHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCH DLDGEMHQQHDGIITCSDCHVVHGEASANDSCASCH HCCCHHHHCCCCEEEECCCEEEECCCCCCCCCCCCC >Mature Secondary Structure MLKVLGLTVLLSFSGAAMATSVADSHTEMAGCESCHQDGAPSADMAYENETCVSCHGSLK CCCHHEEHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCH DLDGEMHQQHDGIITCSDCHVVHGEASANDSCASCH HCCCHHHHCCCCEEEECCCEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11231004 [H]