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The map label for this gene is nrfC [H]

Identifier: 167622243

GI number: 167622243

Start: 361857

End: 362540

Strand: Direct

Name: nrfC [H]

Synonym: Shal_0302

Alternate gene names: 167622243

Gene position: 361857-362540 (Clockwise)

Preceding gene: 167622242

Following gene: 167622244

Centisome position: 6.92

GC content: 45.47

Gene sequence:

>684_bases
ATGTCTAACTCAAGAAGATTGTTTTTAAAAGGTGCCTGCGCTGCTGCGGTTGGGGCTTCCGGTTTTACCATCGCAATGGC
AAGAAGCACGACAAGTGGTGACGTTGAACCCGCTTGCAACTATGCCTTAGTACATGATGAAACCAAGTGTATCGGTTGTG
ATGCTTGCTCTATTGCTTGTCGTGAAGTCAACCAAGTTCCAGAAGGTGTAAGTCGATTAGAGATCGAGCGTGAAGGTCCA
TTTGGTGAGTATCCAAATCAGCATTTTCGTTTTACGCGTAAATCATGTCAACATTGTGATGATACGCCTTGTGTAAAGGT
ATGCCCAACAGGGGCTGCCTATAAAGATCCAAAAACAGGCATCGTAAGTGTCGATGAATGGAAGTGTGTCGGTTGCCAAT
ATTGCATTGCGGCTTGTCCGTATCAAATCCGCTTCATTAATCCTGTGACTAAAGCGGCTGATAAATGCGATTTCTGTAAG
GAAACTCGCCTTAAAGAGGGCCAGTTGCCTGCTTGTGTTACTGCCTGTCCAACTAAAGCGTTAACTTTTGGTGATATTAC
CGATCCACAATCTCAAGTCGTACAAGTGCTTAAATCAACCCCTAGCTACCGCAGCAAAACCGATCTCGGGACTAGACCTA
AGGTGTTCCGTATCGCGTCACAAAGCGGGGAGATAAAGTTATGA

Upstream 100 bases:

>100_bases
CTTTTACATCCCAACACAGATCCTGTGCTAGGCGTATCTGCAAAAGAGCGTAGTGAACTGTGTAGCAGTTGCCACGTGGC
CAAGTAATTAGGGGAACTAT

Downstream 100 bases:

>100_bases
GTCCATTTCATTTTGACAGCCTAATTTGGCATTGGCCGATTGCCATCTACCTATTTCTAGCGGGTGTATCCGCTGGAGCA
ATCTGTTTCGCAGTATTGCT

Product: 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MSNSRRLFLKGACAAAVGASGFTIAMARSTTSGDVEPACNYALVHDETKCIGCDACSIACREVNQVPEGVSRLEIEREGP
FGEYPNQHFRFTRKSCQHCDDTPCVKVCPTGAAYKDPKTGIVSVDEWKCVGCQYCIAACPYQIRFINPVTKAADKCDFCK
ETRLKEGQLPACVTACPTKALTFGDITDPQSQVVQVLKSTPSYRSKTDLGTRPKVFRIASQSGEIKL

Sequences:

>Translated_227_residues
MSNSRRLFLKGACAAAVGASGFTIAMARSTTSGDVEPACNYALVHDETKCIGCDACSIACREVNQVPEGVSRLEIEREGP
FGEYPNQHFRFTRKSCQHCDDTPCVKVCPTGAAYKDPKTGIVSVDEWKCVGCQYCIAACPYQIRFINPVTKAADKCDFCK
ETRLKEGQLPACVTACPTKALTFGDITDPQSQVVQVLKSTPSYRSKTDLGTRPKVFRIASQSGEIKL
>Mature_226_residues
SNSRRLFLKGACAAAVGASGFTIAMARSTTSGDVEPACNYALVHDETKCIGCDACSIACREVNQVPEGVSRLEIEREGPF
GEYPNQHFRFTRKSCQHCDDTPCVKVCPTGAAYKDPKTGIVSVDEWKCVGCQYCIAACPYQIRFINPVTKAADKCDFCKE
TRLKEGQLPACVTACPTKALTFGDITDPQSQVVQVLKSTPSYRSKTDLGTRPKVFRIASQSGEIKL

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=227, Percent_Identity=56.8281938325991, Blast_Score=268, Evalue=2e-73,
Organism=Escherichia coli, GI226510944, Length=222, Percent_Identity=42.7927927927928, Blast_Score=184, Evalue=3e-48,
Organism=Escherichia coli, GI1789370, Length=224, Percent_Identity=30.3571428571429, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787872, Length=182, Percent_Identity=35.1648351648352, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787122, Length=182, Percent_Identity=34.6153846153846, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790326, Length=154, Percent_Identity=35.0649350649351, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1787749, Length=172, Percent_Identity=33.7209302325581, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789067, Length=161, Percent_Identity=34.1614906832298, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787963, Length=205, Percent_Identity=29.7560975609756, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI2367245, Length=155, Percent_Identity=33.5483870967742, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1787740, Length=104, Percent_Identity=34.6153846153846, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082180, Length=170, Percent_Identity=30.5882352941176, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787478, Length=104, Percent_Identity=33.6538461538462, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788811, Length=156, Percent_Identity=30.7692307692308, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789079, Length=226, Percent_Identity=28.7610619469027, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082179, Length=152, Percent_Identity=30.2631578947368, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24696; Mature: 24565

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
8.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
8.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSRRLFLKGACAAAVGASGFTIAMARSTTSGDVEPACNYALVHDETKCIGCDACSIAC
CCCCCEEEEECCHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCEECCCHHHHHH
REVNQVPEGVSRLEIEREGPFGEYPNQHFRFTRKSCQHCDDTPCVKVCPTGAAYKDPKTG
HHHHHHHCCHHHEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCC
IVSVDEWKCVGCQYCIAACPYQIRFINPVTKAADKCDFCKETRLKEGQLPACVTACPTKA
EEECCCCEECHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
LTFGDITDPQSQVVQVLKSTPSYRSKTDLGTRPKVFRIASQSGEIKL
EEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure 
SNSRRLFLKGACAAAVGASGFTIAMARSTTSGDVEPACNYALVHDETKCIGCDACSIAC
CCCCEEEEECCHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCEECCCHHHHHH
REVNQVPEGVSRLEIEREGPFGEYPNQHFRFTRKSCQHCDDTPCVKVCPTGAAYKDPKTG
HHHHHHHCCHHHEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCC
IVSVDEWKCVGCQYCIAACPYQIRFINPVTKAADKCDFCKETRLKEGQLPACVTACPTKA
EEECCCCEECHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
LTFGDITDPQSQVVQVLKSTPSYRSKTDLGTRPKVFRIASQSGEIKL
EEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]