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The map label for this gene is rarD [C]

Identifier: 167622127

GI number: 167622127

Start: 219584

End: 220477

Strand: Reverse

Name: rarD [C]

Synonym: Shal_0186

Alternate gene names: 167622127

Gene position: 220477-219584 (Counterclockwise)

Preceding gene: 167622128

Following gene: 167622126

Centisome position: 4.22

GC content: 43.4

Gene sequence:

>894_bases
ATGTTGTTTTCTGGTAATTCAATCGCGGTTTGTGCCTTTTTGGCTTGGGGCTTACTGCCGCTCTATTTTCAATTTATCCC
CAGTGCCAATGTGCTCGAGTTATTATCGATTCGGATATTATTCTCCATTCCCTGTATTTACCTGTTACTTAAAGCTAAAT
CTCTTCCGATGGCAAAAATATGGGCAGCAATGCGCAACAGAAGAGTCTTGTTAATCTGCTTTTTAGCCGGGATATTTAAC
CTCACCTCGTTATATAGCTTCACTTGGGCAGTGACCAACGGGCAAGTGCTAGCAGCCAGTTTAGGCTACTTTATGAACCC
GATTTTTTCGATTGCCTTGGGCGTACTATTCCTCAAGGACAAACTGTCGACTCTTCAGTCTGTTGCCGTAGCACTTTCTA
TTGCTGGTATTGGTCTACAAGTGCTCTATTATGGCGAGTTGCCTTGGCTTTCAATCATCATGGGTGGCACTTTTGCCCTG
TACGGTTTGATGAAGAAATTCGTCGATTTAGACGCGCTAAGCATCATGATGATTGAGCTGATTTTGATGCTACCCTTTGC
CCTGTGCTTGATCATGAGCGATCTATGGCATCAAACTTCCGTTTTATATTCAGATGACAACAGTAAGATTTTGCTGTACC
TACTCTCAGCGCCAGTCACCCTAATCCCATTGGTTCTGTTCTCTCTTGCAGTGGAGAAGATCAGTCTGATCATGATTGGC
TTTATTCAGTATATAGAGCCCAGCATTCAGTTCTTGCTGGCCGTGATGATATTTGGCGAGGTGTTATTACCGGTGAAGGT
GGCAAGCTTTAGCTTGATCTGGTTAGGCTTACTGCTCTGTATTGCCGATATTGTATTTAAGAAACGAATGTCTCCTACAA
CATCGCGGTTATAA

Upstream 100 bases:

>100_bases
TAGTTCGAGATCAATTACCGAGTGAGTGATTTAGTTAATAATCGTTCAAGCCTGTTGGAGACCAACATACACGGTCTCCT
TTTATGATGAGAAGCGCCCT

Downstream 100 bases:

>100_bases
TTTACAAGCCTCCAGCAATACCTGAGAGACCATGAAGCTCTGTTTTCATGGTCTTTAGTTGAGCTTTCAACTTTCTCCCT
TGGTGCTAATTTAGAGTAAA

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MLFSGNSIAVCAFLAWGLLPLYFQFIPSANVLELLSIRILFSIPCIYLLLKAKSLPMAKIWAAMRNRRVLLICFLAGIFN
LTSLYSFTWAVTNGQVLAASLGYFMNPIFSIALGVLFLKDKLSTLQSVAVALSIAGIGLQVLYYGELPWLSIIMGGTFAL
YGLMKKFVDLDALSIMMIELILMLPFALCLIMSDLWHQTSVLYSDDNSKILLYLLSAPVTLIPLVLFSLAVEKISLIMIG
FIQYIEPSIQFLLAVMIFGEVLLPVKVASFSLIWLGLLLCIADIVFKKRMSPTTSRL

Sequences:

>Translated_297_residues
MLFSGNSIAVCAFLAWGLLPLYFQFIPSANVLELLSIRILFSIPCIYLLLKAKSLPMAKIWAAMRNRRVLLICFLAGIFN
LTSLYSFTWAVTNGQVLAASLGYFMNPIFSIALGVLFLKDKLSTLQSVAVALSIAGIGLQVLYYGELPWLSIIMGGTFAL
YGLMKKFVDLDALSIMMIELILMLPFALCLIMSDLWHQTSVLYSDDNSKILLYLLSAPVTLIPLVLFSLAVEKISLIMIG
FIQYIEPSIQFLLAVMIFGEVLLPVKVASFSLIWLGLLLCIADIVFKKRMSPTTSRL
>Mature_297_residues
MLFSGNSIAVCAFLAWGLLPLYFQFIPSANVLELLSIRILFSIPCIYLLLKAKSLPMAKIWAAMRNRRVLLICFLAGIFN
LTSLYSFTWAVTNGQVLAASLGYFMNPIFSIALGVLFLKDKLSTLQSVAVALSIAGIGLQVLYYGELPWLSIIMGGTFAL
YGLMKKFVDLDALSIMMIELILMLPFALCLIMSDLWHQTSVLYSDDNSKILLYLLSAPVTLIPLVLFSLAVEKISLIMIG
FIQYIEPSIQFLLAVMIFGEVLLPVKVASFSLIWLGLLLCIADIVFKKRMSPTTSRL

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=293, Percent_Identity=31.0580204778157, Blast_Score=148, Evalue=5e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32990; Mature: 32990

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFSGNSIAVCAFLAWGLLPLYFQFIPSANVLELLSIRILFSIPCIYLLLKAKSLPMAKI
CEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
WAAMRNRRVLLICFLAGIFNLTSLYSFTWAVTNGQVLAASLGYFMNPIFSIALGVLFLKD
HHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KLSTLQSVAVALSIAGIGLQVLYYGELPWLSIIMGGTFALYGLMKKFVDLDALSIMMIEL
HHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILMLPFALCLIMSDLWHQTSVLYSDDNSKILLYLLSAPVTLIPLVLFSLAVEKISLIMIG
HHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHH
FIQYIEPSIQFLLAVMIFGEVLLPVKVASFSLIWLGLLLCIADIVFKKRMSPTTSRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLFSGNSIAVCAFLAWGLLPLYFQFIPSANVLELLSIRILFSIPCIYLLLKAKSLPMAKI
CEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
WAAMRNRRVLLICFLAGIFNLTSLYSFTWAVTNGQVLAASLGYFMNPIFSIALGVLFLKD
HHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KLSTLQSVAVALSIAGIGLQVLYYGELPWLSIIMGGTFALYGLMKKFVDLDALSIMMIEL
HHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILMLPFALCLIMSDLWHQTSVLYSDDNSKILLYLLSAPVTLIPLVLFSLAVEKISLIMIG
HHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHH
FIQYIEPSIQFLLAVMIFGEVLLPVKVASFSLIWLGLLLCIADIVFKKRMSPTTSRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]