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The map label for this gene is yabJ [H]

Identifier: 167622107

GI number: 167622107

Start: 193088

End: 193471

Strand: Reverse

Name: yabJ [H]

Synonym: Shal_0166

Alternate gene names: 167622107

Gene position: 193471-193088 (Counterclockwise)

Preceding gene: 167622108

Following gene: 167622106

Centisome position: 3.7

GC content: 43.23

Gene sequence:

>384_bases
ATGAAAACTGTAATCCATACTGAAAATGCTCCAGCTGCAATTGGTCCATACTCTCAAGCGCTTGCTTTCGACAAGTTAGT
ATTCACCTCTGGTCAACTACCTCTAGATCCAGCAACGATGGCTTTCGTAGAAGGTGGTATTAAAGAACAAGCTTACCAAT
CTCTAAAGAACCTTAAAGCTGTTCTAGAACAAGCTGGCGCAGGTACAGACACTGTACTTAAGACCACTTGTTTCCTAGCT
AATATGGAAGATTTCGTTGCTTTCAACGAAGTTTACACTGAAGTTTTCGGCACTGAAGCAGCTCCTGCTCGTTCATGTGT
TCAAGCGGCTCGTCTTCCAAAAGATGCGCTAGTAGAAGTTGAAGCGATCGCCTTCACTAAGTAA

Upstream 100 bases:

>100_bases
AAGCAACTAACATAGTTGCTAATCATTTAAGTATTACCAAACATGCGGTGTACAAGTACATCCGTGAATTTAAATCCTAA
TCATCAGAGATAACTAAACT

Downstream 100 bases:

>100_bases
TAAGCCTGTTATACAAGCCCCTGTCTGTCTTTCTATTCAAGAAAGATGGGCAGAAGCCTCTTCGTTCATAATATATAGTG
GTTACTATGCTAAAGCTGAC

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MKTVIHTENAPAAIGPYSQALAFDKLVFTSGQLPLDPATMAFVEGGIKEQAYQSLKNLKAVLEQAGAGTDTVLKTTCFLA
NMEDFVAFNEVYTEVFGTEAAPARSCVQAARLPKDALVEVEAIAFTK

Sequences:

>Translated_127_residues
MKTVIHTENAPAAIGPYSQALAFDKLVFTSGQLPLDPATMAFVEGGIKEQAYQSLKNLKAVLEQAGAGTDTVLKTTCFLA
NMEDFVAFNEVYTEVFGTEAAPARSCVQAARLPKDALVEVEAIAFTK
>Mature_127_residues
MKTVIHTENAPAAIGPYSQALAFDKLVFTSGQLPLDPATMAFVEGGIKEQAYQSLKNLKAVLEQAGAGTDTVLKTTCFLA
NMEDFVAFNEVYTEVFGTEAAPARSCVQAARLPKDALVEVEAIAFTK

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=44, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI87082213, Length=126, Percent_Identity=46.031746031746, Blast_Score=117, Evalue=2e-28,
Organism=Escherichia coli, GI87082396, Length=129, Percent_Identity=46.5116279069767, Blast_Score=117, Evalue=3e-28,
Organism=Escherichia coli, GI1787245, Length=123, Percent_Identity=30.8943089430894, Blast_Score=65, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=124, Percent_Identity=50, Blast_Score=115, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI25148896, Length=124, Percent_Identity=50, Blast_Score=115, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI71982068, Length=124, Percent_Identity=50, Blast_Score=115, Evalue=7e-27,
Organism=Saccharomyces cerevisiae, GI6322138, Length=125, Percent_Identity=40.8, Blast_Score=97, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6320899, Length=104, Percent_Identity=43.2692307692308, Blast_Score=86, Evalue=1e-18,
Organism=Drosophila melanogaster, GI19921376, Length=126, Percent_Identity=50.7936507936508, Blast_Score=125, Evalue=8e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13575; Mature: 13575

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVIHTENAPAAIGPYSQALAFDKLVFTSGQLPLDPATMAFVEGGIKEQAYQSLKNLKA
CCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH
VLEQAGAGTDTVLKTTCFLANMEDFVAFNEVYTEVFGTEAAPARSCVQAARLPKDALVEV
HHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHH
EAIAFTK
HHHEECC
>Mature Secondary Structure
MKTVIHTENAPAAIGPYSQALAFDKLVFTSGQLPLDPATMAFVEGGIKEQAYQSLKNLKA
CCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH
VLEQAGAGTDTVLKTTCFLANMEDFVAFNEVYTEVFGTEAAPARSCVQAARLPKDALVEV
HHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHH
EAIAFTK
HHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]