Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167622101

Identifier: 167622101

GI number: 167622101

Start: 186509

End: 187270

Strand: Direct

Name: 167622101

Synonym: Shal_0160

Alternate gene names: NA

Gene position: 186509-187270 (Clockwise)

Preceding gene: 167622100

Following gene: 167622102

Centisome position: 3.57

GC content: 48.03

Gene sequence:

>762_bases
ATGAAAGCTTGGTTGATCTGCATTGATGACACCGATGATATCGGCACTAAAGGCACGGGAGAAATTGCCGAAGAGATTGC
GGCCAAACTTGCGCCCCCTCCACTCACTGCGGATGACAAAATACCCGTTACCCGACTTGTGACCCGCCATCAACTCTTTG
TGCATCCAGATATTCCTTATACTTCGCATAATAGCGCCATGTGTTTTCAGATTGAAACTGAACTCAGCTTCGATGAGATA
AAAGCAATCTGTATCGCGCATTTAAAGCAAGAGTCTGCAGCGGCTTCCGATCCCGGGCTAGCCATCTTAGATTTAGCCTC
CAGCTATGACATCGAGCAACTTATCGCCTTTGGTCAGCAATCTAAAGTTGAAGTGAAGACAAAAGATCAAGCTTACACTT
TGGCAGAGGTGTTAGGCATTGATCTGTCGGAGCATGGCGGCACGGGCCAAGGCATCATTGGTGCTCTCGCAGGCTTGGGG
TTACGACTCAGTGGTCAAGATGGTCGTGTTAAAGGCCAGCTAAAGTTAGGACAAACGTCAGACGGATCAGGTGAAGTGCA
GATGAGTGTTGCAGAGGTATTAGCAGCGACTGGACTACAGGCAGTGATCTCGGTTGACGGAGAGAAGCTCGCGGGCGATC
AGGTGCTGACACTTAAAGGTAAGATCAAAGCGGTATTGACTCAATATCAATTTGCGCTGTTAGTCTGCGGTGATTCAGGG
CGCTGGCTAAATGCGACTAAACAAGAATTAAAACCTTATTAA

Upstream 100 bases:

>100_bases
ACGGTTACATGCTCATGACTTGCTACATCGAGGCCAGATTGAAGATAAATAACGTAATTTTCTATATTGGTATTACACTA
AAAATAAATAAGGGTTTTAG

Downstream 100 bases:

>100_bases
TATTAGGTGCTAGAATTGGAGAGGATTATGCAGCAGTGGTTTATCCAAGTAGATGGTTTATGGCAGTTTAAGTTTGGCAT
TGAAGATCATCTTCTTGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MKAWLICIDDTDDIGTKGTGEIAEEIAAKLAPPPLTADDKIPVTRLVTRHQLFVHPDIPYTSHNSAMCFQIETELSFDEI
KAICIAHLKQESAAASDPGLAILDLASSYDIEQLIAFGQQSKVEVKTKDQAYTLAEVLGIDLSEHGGTGQGIIGALAGLG
LRLSGQDGRVKGQLKLGQTSDGSGEVQMSVAEVLAATGLQAVISVDGEKLAGDQVLTLKGKIKAVLTQYQFALLVCGDSG
RWLNATKQELKPY

Sequences:

>Translated_253_residues
MKAWLICIDDTDDIGTKGTGEIAEEIAAKLAPPPLTADDKIPVTRLVTRHQLFVHPDIPYTSHNSAMCFQIETELSFDEI
KAICIAHLKQESAAASDPGLAILDLASSYDIEQLIAFGQQSKVEVKTKDQAYTLAEVLGIDLSEHGGTGQGIIGALAGLG
LRLSGQDGRVKGQLKLGQTSDGSGEVQMSVAEVLAATGLQAVISVDGEKLAGDQVLTLKGKIKAVLTQYQFALLVCGDSG
RWLNATKQELKPY
>Mature_253_residues
MKAWLICIDDTDDIGTKGTGEIAEEIAAKLAPPPLTADDKIPVTRLVTRHQLFVHPDIPYTSHNSAMCFQIETELSFDEI
KAICIAHLKQESAAASDPGLAILDLASSYDIEQLIAFGQQSKVEVKTKDQAYTLAEVLGIDLSEHGGTGQGIIGALAGLG
LRLSGQDGRVKGQLKLGQTSDGSGEVQMSVAEVLAATGLQAVISVDGEKLAGDQVLTLKGKIKAVLTQYQFALLVCGDSG
RWLNATKQELKPY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26887; Mature: 26887

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAWLICIDDTDDIGTKGTGEIAEEIAAKLAPPPLTADDKIPVTRLVTRHQLFVHPDIPY
CCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCEEEECCCCCC
TSHNSAMCFQIETELSFDEIKAICIAHLKQESAAASDPGLAILDLASSYDIEQLIAFGQQ
CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHCCCC
SKVEVKTKDQAYTLAEVLGIDLSEHGGTGQGIIGALAGLGLRLSGQDGRVKGQLKLGQTS
CEEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCEEEECCCCEEEEEEEECCCC
DGSGEVQMSVAEVLAATGLQAVISVDGEKLAGDQVLTLKGKIKAVLTQYQFALLVCGDSG
CCCCEEEHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHEEEEEEEECCCC
RWLNATKQELKPY
CCCCCCHHHCCCC
>Mature Secondary Structure
MKAWLICIDDTDDIGTKGTGEIAEEIAAKLAPPPLTADDKIPVTRLVTRHQLFVHPDIPY
CCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCEEEECCCCCC
TSHNSAMCFQIETELSFDEIKAICIAHLKQESAAASDPGLAILDLASSYDIEQLIAFGQQ
CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHCCCC
SKVEVKTKDQAYTLAEVLGIDLSEHGGTGQGIIGALAGLGLRLSGQDGRVKGQLKLGQTS
CEEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCEEEECCCCEEEEEEEECCCC
DGSGEVQMSVAEVLAATGLQAVISVDGEKLAGDQVLTLKGKIKAVLTQYQFALLVCGDSG
CCCCEEEHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHEEEEEEEECCCC
RWLNATKQELKPY
CCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA