| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167622101
Identifier: 167622101
GI number: 167622101
Start: 186509
End: 187270
Strand: Direct
Name: 167622101
Synonym: Shal_0160
Alternate gene names: NA
Gene position: 186509-187270 (Clockwise)
Preceding gene: 167622100
Following gene: 167622102
Centisome position: 3.57
GC content: 48.03
Gene sequence:
>762_bases ATGAAAGCTTGGTTGATCTGCATTGATGACACCGATGATATCGGCACTAAAGGCACGGGAGAAATTGCCGAAGAGATTGC GGCCAAACTTGCGCCCCCTCCACTCACTGCGGATGACAAAATACCCGTTACCCGACTTGTGACCCGCCATCAACTCTTTG TGCATCCAGATATTCCTTATACTTCGCATAATAGCGCCATGTGTTTTCAGATTGAAACTGAACTCAGCTTCGATGAGATA AAAGCAATCTGTATCGCGCATTTAAAGCAAGAGTCTGCAGCGGCTTCCGATCCCGGGCTAGCCATCTTAGATTTAGCCTC CAGCTATGACATCGAGCAACTTATCGCCTTTGGTCAGCAATCTAAAGTTGAAGTGAAGACAAAAGATCAAGCTTACACTT TGGCAGAGGTGTTAGGCATTGATCTGTCGGAGCATGGCGGCACGGGCCAAGGCATCATTGGTGCTCTCGCAGGCTTGGGG TTACGACTCAGTGGTCAAGATGGTCGTGTTAAAGGCCAGCTAAAGTTAGGACAAACGTCAGACGGATCAGGTGAAGTGCA GATGAGTGTTGCAGAGGTATTAGCAGCGACTGGACTACAGGCAGTGATCTCGGTTGACGGAGAGAAGCTCGCGGGCGATC AGGTGCTGACACTTAAAGGTAAGATCAAAGCGGTATTGACTCAATATCAATTTGCGCTGTTAGTCTGCGGTGATTCAGGG CGCTGGCTAAATGCGACTAAACAAGAATTAAAACCTTATTAA
Upstream 100 bases:
>100_bases ACGGTTACATGCTCATGACTTGCTACATCGAGGCCAGATTGAAGATAAATAACGTAATTTTCTATATTGGTATTACACTA AAAATAAATAAGGGTTTTAG
Downstream 100 bases:
>100_bases TATTAGGTGCTAGAATTGGAGAGGATTATGCAGCAGTGGTTTATCCAAGTAGATGGTTTATGGCAGTTTAAGTTTGGCAT TGAAGATCATCTTCTTGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 253; Mature: 253
Protein sequence:
>253_residues MKAWLICIDDTDDIGTKGTGEIAEEIAAKLAPPPLTADDKIPVTRLVTRHQLFVHPDIPYTSHNSAMCFQIETELSFDEI KAICIAHLKQESAAASDPGLAILDLASSYDIEQLIAFGQQSKVEVKTKDQAYTLAEVLGIDLSEHGGTGQGIIGALAGLG LRLSGQDGRVKGQLKLGQTSDGSGEVQMSVAEVLAATGLQAVISVDGEKLAGDQVLTLKGKIKAVLTQYQFALLVCGDSG RWLNATKQELKPY
Sequences:
>Translated_253_residues MKAWLICIDDTDDIGTKGTGEIAEEIAAKLAPPPLTADDKIPVTRLVTRHQLFVHPDIPYTSHNSAMCFQIETELSFDEI KAICIAHLKQESAAASDPGLAILDLASSYDIEQLIAFGQQSKVEVKTKDQAYTLAEVLGIDLSEHGGTGQGIIGALAGLG LRLSGQDGRVKGQLKLGQTSDGSGEVQMSVAEVLAATGLQAVISVDGEKLAGDQVLTLKGKIKAVLTQYQFALLVCGDSG RWLNATKQELKPY >Mature_253_residues MKAWLICIDDTDDIGTKGTGEIAEEIAAKLAPPPLTADDKIPVTRLVTRHQLFVHPDIPYTSHNSAMCFQIETELSFDEI KAICIAHLKQESAAASDPGLAILDLASSYDIEQLIAFGQQSKVEVKTKDQAYTLAEVLGIDLSEHGGTGQGIIGALAGLG LRLSGQDGRVKGQLKLGQTSDGSGEVQMSVAEVLAATGLQAVISVDGEKLAGDQVLTLKGKIKAVLTQYQFALLVCGDSG RWLNATKQELKPY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26887; Mature: 26887
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAWLICIDDTDDIGTKGTGEIAEEIAAKLAPPPLTADDKIPVTRLVTRHQLFVHPDIPY CCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCEEEECCCCCC TSHNSAMCFQIETELSFDEIKAICIAHLKQESAAASDPGLAILDLASSYDIEQLIAFGQQ CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHCCCC SKVEVKTKDQAYTLAEVLGIDLSEHGGTGQGIIGALAGLGLRLSGQDGRVKGQLKLGQTS CEEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCEEEECCCCEEEEEEEECCCC DGSGEVQMSVAEVLAATGLQAVISVDGEKLAGDQVLTLKGKIKAVLTQYQFALLVCGDSG CCCCEEEHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHEEEEEEEECCCC RWLNATKQELKPY CCCCCCHHHCCCC >Mature Secondary Structure MKAWLICIDDTDDIGTKGTGEIAEEIAAKLAPPPLTADDKIPVTRLVTRHQLFVHPDIPY CCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCEEEECCCCCC TSHNSAMCFQIETELSFDEIKAICIAHLKQESAAASDPGLAILDLASSYDIEQLIAFGQQ CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHCCCC SKVEVKTKDQAYTLAEVLGIDLSEHGGTGQGIIGALAGLGLRLSGQDGRVKGQLKLGQTS CEEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCEEEECCCCEEEEEEEECCCC DGSGEVQMSVAEVLAATGLQAVISVDGEKLAGDQVLTLKGKIKAVLTQYQFALLVCGDSG CCCCEEEHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHEEEEEEEECCCC RWLNATKQELKPY CCCCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA