| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622090
Identifier: 167622090
GI number: 167622090
Start: 167271
End: 168083
Strand: Reverse
Name: 167622090
Synonym: Shal_0149
Alternate gene names: NA
Gene position: 168083-167271 (Counterclockwise)
Preceding gene: 167622093
Following gene: 167622089
Centisome position: 3.22
GC content: 44.03
Gene sequence:
>813_bases ATGCTAAACCTTAAACGCGTTATTGGTCTTGCGGTTACCGCAGCACTAGTTGTTGGTATGCCAGCCCAAGCTAACGAAGT TATCAAACTTGCGACAACAACCAGTACTGAAAACTCAGGCCTATTAAAGAACCTACTGCCAACCTTTGAAAAAGAAACTG GCTACAAGGTACAAGTTATCGCGACGGGTACTGGTAAGGCGCTTAAACTTGCTCGCCAAGGCGACGTTGACGTTGTAATG ACTCATGCACCAGGCGCTGAAGCGAAATTTGTTGAAGAAGGTTATGGTCATCTACCACGCGGTATCATGGAAAATGATTT TGTTGTTCTAGGCCCAAAGAACGACCCAGCTCAAATCCGTTCAAGCAAAACAGCCGAAGAAGCTTTTGCTAAAATCGAAA AATCAGGCGTACCTTTCATTTCACGTGGTGACAACTCAGGCACCAACATGAAAGAACTACTGATCTGGAAGAATGCTAAT ATTACTCCAGACTTCAAAGGTTACACGGCTGTTGGTCAAGGTATGGGCAAAACCCTACTTATGGCTAGCGAATTAGAAGC TTATACACTATCTGACCGTGGCACTTTTGTTGCTTATTCAGGTAAAATAGACTTAGCAGTAGATTTTGATGGCGGTGCAG CACTGGCTAACCCATATCAAATCATACTAATCAGTGAAACCAAGTACCCAACACTAAACCACAAGGGTGCTAAGGCATTG AGCGACTGGCTGATCGGCGCTGAAGCGCAAGGCATGATCAACAATTATAAAGTTCAGGGAGAACAATTGTTCAAGGCAAC TTATAGCGAATGA
Upstream 100 bases:
>100_bases TCAAGCATGGCATCAAACTTGCTTTTCATGAGCACTGAATTCGATTTTTAACAGGCGCTCAGGTATCGAGTGGCCAATTT TAATTTTCCAAGGAGTAAAA
Downstream 100 bases:
>100_bases ATGAAGGCTGGTTAGCCCTTATACAGCAGGCATTAAGCCTGCTGTTTTCATTGGACCCAGAAGTGTGGTCCATCATATCT GTCTCTTTTTCAGTATCATT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: Signal Peptide Protein; TUNGstate ABC Transporter Permease; Molybdate Or TUNGstate Transport; TUNGstate ABC Transporter Permease-Like Protein; TUNGstate Abc Transporter Permease; Signal Peptide; ABC-Type Transport Protein Permease Component; ABC Transporter; Basic Organic Compound ABC-Transporter; ABC Transporter Permease Protein; ABC TUNGstate Transporter Permease Component; ABC-Type Transport System Permease Component; ABC Transporter Periplasmic Protein; ABC-Type TUNGstate Transport System Permease Component-Like; Periplasmic Protein
Number of amino acids: Translated: 270; Mature: 270
Protein sequence:
>270_residues MLNLKRVIGLAVTAALVVGMPAQANEVIKLATTTSTENSGLLKNLLPTFEKETGYKVQVIATGTGKALKLARQGDVDVVM THAPGAEAKFVEEGYGHLPRGIMENDFVVLGPKNDPAQIRSSKTAEEAFAKIEKSGVPFISRGDNSGTNMKELLIWKNAN ITPDFKGYTAVGQGMGKTLLMASELEAYTLSDRGTFVAYSGKIDLAVDFDGGAALANPYQIILISETKYPTLNHKGAKAL SDWLIGAEAQGMINNYKVQGEQLFKATYSE
Sequences:
>Translated_270_residues MLNLKRVIGLAVTAALVVGMPAQANEVIKLATTTSTENSGLLKNLLPTFEKETGYKVQVIATGTGKALKLARQGDVDVVM THAPGAEAKFVEEGYGHLPRGIMENDFVVLGPKNDPAQIRSSKTAEEAFAKIEKSGVPFISRGDNSGTNMKELLIWKNAN ITPDFKGYTAVGQGMGKTLLMASELEAYTLSDRGTFVAYSGKIDLAVDFDGGAALANPYQIILISETKYPTLNHKGAKAL SDWLIGAEAQGMINNYKVQGEQLFKATYSE >Mature_270_residues MLNLKRVIGLAVTAALVVGMPAQANEVIKLATTTSTENSGLLKNLLPTFEKETGYKVQVIATGTGKALKLARQGDVDVVM THAPGAEAKFVEEGYGHLPRGIMENDFVVLGPKNDPAQIRSSKTAEEAFAKIEKSGVPFISRGDNSGTNMKELLIWKNAN ITPDFKGYTAVGQGMGKTLLMASELEAYTLSDRGTFVAYSGKIDLAVDFDGGAALANPYQIILISETKYPTLNHKGAKAL SDWLIGAEAQGMINNYKVQGEQLFKATYSE
Specific function: Unknown
COG id: COG2998
COG function: function code H; ABC-type tungstate transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28965; Mature: 28965
Theoretical pI: Translated: 6.82; Mature: 6.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNLKRVIGLAVTAALVVGMPAQANEVIKLATTTSTENSGLLKNLLPTFEKETGYKVQVI CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEE ATGTGKALKLARQGDVDVVMTHAPGAEAKFVEEGYGHLPRGIMENDFVVLGPKNDPAQIR EECCCCEEEEEECCCEEEEEEECCCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHH SSKTAEEAFAKIEKSGVPFISRGDNSGTNMKELLIWKNANITPDFKGYTAVGQGMGKTLL CCCHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCEEE MASELEAYTLSDRGTFVAYSGKIDLAVDFDGGAALANPYQIILISETKYPTLNHKGAKAL EEECCCEEEECCCCEEEEECCEEEEEEECCCCCEECCCEEEEEEECCCCCCCCCCCHHHH SDWLIGAEAQGMINNYKVQGEQLFKATYSE HHHHCCCCCCCCCCCEEECHHHHHHHHCCC >Mature Secondary Structure MLNLKRVIGLAVTAALVVGMPAQANEVIKLATTTSTENSGLLKNLLPTFEKETGYKVQVI CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEE ATGTGKALKLARQGDVDVVMTHAPGAEAKFVEEGYGHLPRGIMENDFVVLGPKNDPAQIR EECCCCEEEEEECCCEEEEEEECCCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHH SSKTAEEAFAKIEKSGVPFISRGDNSGTNMKELLIWKNANITPDFKGYTAVGQGMGKTLL CCCHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCEEE MASELEAYTLSDRGTFVAYSGKIDLAVDFDGGAALANPYQIILISETKYPTLNHKGAKAL EEECCCEEEECCCCEEEEECCEEEEEEECCCCCEECCCEEEEEEECCCCCCCCCCCHHHH SDWLIGAEAQGMINNYKVQGEQLFKATYSE HHHHCCCCCCCCCCCEEECHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA