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The map label for this gene is arnC [H]

Identifier: 167622078

GI number: 167622078

Start: 151495

End: 152226

Strand: Direct

Name: arnC [H]

Synonym: Shal_0137

Alternate gene names: 167622078

Gene position: 151495-152226 (Clockwise)

Preceding gene: 167622077

Following gene: 167622079

Centisome position: 2.9

GC content: 48.22

Gene sequence:

>732_bases
TTGATTTCAGTCGTAATCCCAGCAAAAGACGAGCAAGCTAATATTGGCCCTTTAGTGGAAGAGATCCATCGCGCCCTAAA
AGACAAAACGCCCTTTGAAGTGATCGTGGTGGATGACGGCAGTAACGACGACACCTTCGGAGAGTTATTGCGTACAGGTG
AGCGACTCGGGTGTTCAACGAAAGCGATTCGCCATGAAAAAAGTACTGGCCAAAGTACCGCGCTGCATACTGGTGTGCAA
AACGCTAGCGGTGACATTATCGTGACATTAGATGCCGATGGTCAGAATGATCCTGCCGATATTCCCGCCATGTTAGATCT
TATTCCCACCATGACTCACAGTGATTTTTGTATCGCGGGTTACCGTAAGAACCGTAAAGACACTTCTTGGAAGCGTTTTC
AATCTCGCGTCGCCAATAAAATTCGTGATGCGCTACTCGGTGATGGTGTGCCCGATACTGGCTGTGGCTTAAAGGTATTT
CCTAAAGCTAGCTTCTTGAAGCTGCCCTATTTCGATCATATGCACCGCTATATCCCTGCTCTTATTCGTCGTCATGGCGG
CGAGATTAAAGTGTCGGTGGTGAATCATAGAGATCGTATGGAGGGTGAGTCTAAGTACACTGCGTGGAACCGCGTCTGGG
TGGGGATTGTCGATATCATGGGAGTGATGTGGCTTAACCGTAGAACACGTTTACCCAATGTAGTCAAAACTGAGACGACA
AGGGCTGAGTAG

Upstream 100 bases:

>100_bases
CCTGCGCTCACCAAGAGTTAACACACTTCTTTGTAATGGTTTCAGTTAAAGATTGAACAGAGCTATGTTTTAGCTCTAAC
CACTTTTTGGAGTAAGTATT

Downstream 100 bases:

>100_bases
CGATGAAGCGCTTAGCTAAAACATTAGTCGTCATCGCGATACTAGTATTGCTGATGTTTGCTGCCCAGCAGGGGCTATTT
GAGCACTTAACTGATAGCAA

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MISVVIPAKDEQANIGPLVEEIHRALKDKTPFEVIVVDDGSNDDTFGELLRTGERLGCSTKAIRHEKSTGQSTALHTGVQ
NASGDIIVTLDADGQNDPADIPAMLDLIPTMTHSDFCIAGYRKNRKDTSWKRFQSRVANKIRDALLGDGVPDTGCGLKVF
PKASFLKLPYFDHMHRYIPALIRRHGGEIKVSVVNHRDRMEGESKYTAWNRVWVGIVDIMGVMWLNRRTRLPNVVKTETT
RAE

Sequences:

>Translated_243_residues
MISVVIPAKDEQANIGPLVEEIHRALKDKTPFEVIVVDDGSNDDTFGELLRTGERLGCSTKAIRHEKSTGQSTALHTGVQ
NASGDIIVTLDADGQNDPADIPAMLDLIPTMTHSDFCIAGYRKNRKDTSWKRFQSRVANKIRDALLGDGVPDTGCGLKVF
PKASFLKLPYFDHMHRYIPALIRRHGGEIKVSVVNHRDRMEGESKYTAWNRVWVGIVDIMGVMWLNRRTRLPNVVKTETT
RAE
>Mature_243_residues
MISVVIPAKDEQANIGPLVEEIHRALKDKTPFEVIVVDDGSNDDTFGELLRTGERLGCSTKAIRHEKSTGQSTALHTGVQ
NASGDIIVTLDADGQNDPADIPAMLDLIPTMTHSDFCIAGYRKNRKDTSWKRFQSRVANKIRDALLGDGVPDTGCGLKVF
PKASFLKLPYFDHMHRYIPALIRRHGGEIKVSVVNHRDRMEGESKYTAWNRVWVGIVDIMGVMWLNRRTRLPNVVKTETT
RAE

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1788588, Length=210, Percent_Identity=28.5714285714286, Blast_Score=94, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 27177; Mature: 27177

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISVVIPAKDEQANIGPLVEEIHRALKDKTPFEVIVVDDGSNDDTFGELLRTGERLGCST
CEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCHHCCCCH
KAIRHEKSTGQSTALHTGVQNASGDIIVTLDADGQNDPADIPAMLDLIPTMTHSDFCIAG
HHHHHHCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEC
YRKNRKDTSWKRFQSRVANKIRDALLGDGVPDTGCGLKVFPKASFLKLPYFDHMHRYIPA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEECCCHHHHHHHHHH
LIRRHGGEIKVSVVNHRDRMEGESKYTAWNRVWVGIVDIMGVMWLNRRTRLPNVVKTETT
HHHHCCCEEEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
RAE
CCC
>Mature Secondary Structure
MISVVIPAKDEQANIGPLVEEIHRALKDKTPFEVIVVDDGSNDDTFGELLRTGERLGCST
CEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCHHCCCCH
KAIRHEKSTGQSTALHTGVQNASGDIIVTLDADGQNDPADIPAMLDLIPTMTHSDFCIAG
HHHHHHCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEC
YRKNRKDTSWKRFQSRVANKIRDALLGDGVPDTGCGLKVFPKASFLKLPYFDHMHRYIPA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEECCCHHHHHHHHHH
LIRRHGGEIKVSVVNHRDRMEGESKYTAWNRVWVGIVDIMGVMWLNRRTRLPNVVKTETT
HHHHCCCEEEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
RAE
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA