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The map label for this gene is yjgF [H]

Identifier: 167622018

GI number: 167622018

Start: 87756

End: 88142

Strand: Reverse

Name: yjgF [H]

Synonym: Shal_0077

Alternate gene names: 167622018

Gene position: 88142-87756 (Counterclockwise)

Preceding gene: 167622019

Following gene: 167622016

Centisome position: 1.69

GC content: 45.48

Gene sequence:

>387_bases
ATGACTAAAGCACTTAACACTGAATCAGCACCTGCAGCTATCGGCCCATATGTTCAAGGTGTCGATCTAGGCAGCATGAT
CTTTACTTCTGGCCAACTACCAATCGACCCAGCTACTGGTGAGATGTCTGCAGATGTTGCAGAGCAGGCACTACAGTCAC
TAAAGAACGTTCAGGCTATCGTAGAGTCTGCGGGTCTGACTATGGCAAACGTGTTCAAGATGACGGTTTTCGTTAAAGAC
TTGAACAACTTCCCAATCGTGAATGAAGTTTATCAAAACTTCTTCGATCAGCTTGGTGCAAGTTACCCAGCTCGTTCATG
TGTAGAGGTTGCCCGTCTACCTAAAGATGCACAGATTGAAATCGAAGCGATTGCAGTAAGAAGCTAA

Upstream 100 bases:

>100_bases
CCAAGCTCAAGTACAGCCAGCCTAATTGCAACTAATACAATAAACGAATAACAATAACTGTGGCGGCGTAGTCCGTCACA
GATAAAAACAGGAAATAGAA

Downstream 100 bases:

>100_bases
TCAGAATTCAATGACCCGCGAATCCCCCAAAAAATACCGCAGCATGCTGCGGTATTTTTTTAATTGTTTTTCCATTTTAA
AATTAACGGTCAGGCTCTTT

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MTKALNTESAPAAIGPYVQGVDLGSMIFTSGQLPIDPATGEMSADVAEQALQSLKNVQAIVESAGLTMANVFKMTVFVKD
LNNFPIVNEVYQNFFDQLGASYPARSCVEVARLPKDAQIEIEAIAVRS

Sequences:

>Translated_128_residues
MTKALNTESAPAAIGPYVQGVDLGSMIFTSGQLPIDPATGEMSADVAEQALQSLKNVQAIVESAGLTMANVFKMTVFVKD
LNNFPIVNEVYQNFFDQLGASYPARSCVEVARLPKDAQIEIEAIAVRS
>Mature_127_residues
TKALNTESAPAAIGPYVQGVDLGSMIFTSGQLPIDPATGEMSADVAEQALQSLKNVQAIVESAGLTMANVFKMTVFVKDL
NNFPIVNEVYQNFFDQLGASYPARSCVEVARLPKDAQIEIEAIAVRS

Specific function: May have a phosphotransferase activity [H]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=128, Percent_Identity=43.75, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=68.503937007874, Blast_Score=184, Evalue=2e-48,
Organism=Escherichia coli, GI87082213, Length=128, Percent_Identity=64.84375, Blast_Score=181, Evalue=9e-48,
Organism=Escherichia coli, GI1787245, Length=115, Percent_Identity=32.1739130434783, Blast_Score=68, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=44.2622950819672, Blast_Score=111, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=44.2622950819672, Blast_Score=111, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=44.2622950819672, Blast_Score=111, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6322138, Length=122, Percent_Identity=35.2459016393443, Blast_Score=83, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=35.9223300970874, Blast_Score=78, Evalue=4e-16,
Organism=Drosophila melanogaster, GI19921376, Length=125, Percent_Identity=40.8, Blast_Score=93, Evalue=4e-20,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13697; Mature: 13566

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKALNTESAPAAIGPYVQGVDLGSMIFTSGQLPIDPATGEMSADVAEQALQSLKNVQAI
CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VESAGLTMANVFKMTVFVKDLNNFPIVNEVYQNFFDQLGASYPARSCVEVARLPKDAQIE
HHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEE
IEAIAVRS
EEEEEECC
>Mature Secondary Structure 
TKALNTESAPAAIGPYVQGVDLGSMIFTSGQLPIDPATGEMSADVAEQALQSLKNVQAI
CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VESAGLTMANVFKMTVFVKDLNNFPIVNEVYQNFFDQLGASYPARSCVEVARLPKDAQIE
HHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEE
IEAIAVRS
EEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]