| Definition | Thermoanaerobacter sp. X514 chromosome, complete genome. |
|---|---|
| Accession | NC_010320 |
| Length | 2,457,259 |
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The map label for this gene is lepA [H]
Identifier: 167040706
GI number: 167040706
Start: 2094268
End: 2096079
Strand: Reverse
Name: lepA [H]
Synonym: Teth514_2083
Alternate gene names: 167040706
Gene position: 2096079-2094268 (Counterclockwise)
Preceding gene: 167040707
Following gene: 167040705
Centisome position: 85.3
GC content: 35.76
Gene sequence:
>1812_bases ATGTCAGAGAGGATGCAGTATATTAGAAATTTTTGCATTATTGCTCACATAGACCATGGTAAATCTACTCTTGCAGATAG ACTTATTGAGAAAACAGGTTTTCTTTCTGAAAGGGAAACAGATAAGCAAATTTTAGATAATTTAGAATTAGAAAGGGAAA GAGGAATTACTATAAAGTTAAAGCCTGTAAGAATGATTTATAAAGCTAAAGATGGAAATGAATATGAGCTTAATCTCATT GATACCCCTGGACATGTGGATTTTACTTACGAGGTATCCCGAAGTATTGCAGCTTGTGAAGGAGCCCTGCTTGTAGTAGA TGCTACACAAGGGATTGAGGCGCAAACCCTTGCTAATGTATATATGGCTTTAGAACATGATTTAGAGATAGTACCTGTGA TAAATAAAATAGACCTTCCTTCAGCAAATCCTGAACATGTAAAAAAAGAAATTGAAGACGTGATTGGGATTGACGCAGAA GATGCTTTGCTTACCTCTGCTAAAGAAGGCATAGGTATAGAAGAAGTTTTAGAAGCCATTGTAAATAGAATTCCCCCTCC AAAAGGAGATGAAAATAAGCCTTTAAAAGCGCTAATTTTTGACTCTTTTTATGATAATTACAAAGGAGCAATAAGCTTTG TAAGGGTAGTAGATGGAATTGTTAAACCAGGAATGAGAATAAAAATGTTTTCTACTGGCAAAGTTTTTGAAGTTACAGAA GTGGGTATGTTTAGACCTAACCTTTATCCAGTAGAAGAGCTTAAAGCAGGTGAAGTTGGATATATTGCTGCCAGCATAAA AAATGTAAAAGACACTCGCGTAGGAGATACAATAACAGACGCAGATAATCCAGCCGATTTTCCACTTCCTGGCTATAAAG AAGTAGTGCCAATGGTCTTTTGTGGAATTTATCCTGCGGATGGACAAGATTATGAAAATTTAAAAGAAGCTTTAGAAAAA CTTCAGCTAAATGATGCGTCACTTGTATTTGAACCTGACACCTCTGCTGCCTTAGGTTTTGGATTTAGGTGTGGCTTTTT GGGACTTTTGCACATGGAAATAGTTCAAGAAAGGTTGGAAAGAGAGTACAACTTAAATCTTGTCACTACTGCACCAAGTG TAATTTACAAAGTTTACAAAACTAATGGAGAGGTATTGGATTTGGACAATCCTACAAAAATGCCGCCTCCTACGCAAATA GATCATATTGAAGAGCCAATTGTGGAAGCTACTATTATGGTGCCTACTGAATATGTAGGGGCAGTTATGGAGCTTTGCCA GGATAGACGTGGAGCATATTTAGGAATGGAATATTTAGAACAAACTCGCGTACTTTTAAAATATGAAATGCCTTTAAATG AGATAATATATGACTTTTTTGATGCTTTAAAATCACGAACAAGGGGTTACGCCTCTTTCGACTATGAGCTTAAAGGGTAT AAAGAATCTAATTTGGTAAAGCTTGATATTTTAATAAATGGCGAATTGGTAGATGCTTTATCCATGATAGTTCATAAAGA TAAAGCCTATGAAAAAGCTAGAAAAATTGTAGAAAAGTTAAAAGAAAATATTCCAAGGCATCTTTTTGAGATTCCAATCC AGGCTGCAATAGGCTCTAAGATTATTGCAAGAGAGACTGTAAAAGCTTTGAGAAAAAACGTTCTTGCCAAGTGTTATGGA GGAGATGTAACTCGTAAGAAAAAACTTTTGGAGAAGCAAAAAGAAGGCAAAAAGCGCATGAGACAGGTGGGAAGTGTCGA AATACCTCAAGAGGCTTTTATGTCAATATTGAAGCTAGATGATGAAAAATGA
Upstream 100 bases:
>100_bases TGGTAAGGAGTCAGTTATTGACATAGGAGGGTTAAGCCAATACTTTAAAGGCCGATTTTGGAAATGAGGTCTAAGTCTTT AATTTTTGAGGAGGTACAAA
Downstream 100 bases:
>100_bases GGGAGATAGGATTATACATTCACATTCCTTTTTGTAAAAGAAAATGCTATTATTGTGATTTTAATTCTTATGCAGGCTAT GATTATCTTTTTGACGACTA
Product: GTP-binding protein LepA
Products: NA
Alternate protein names: EF-4; Ribosomal back-translocase LepA [H]
Number of amino acids: Translated: 603; Mature: 602
Protein sequence:
>603_residues MSERMQYIRNFCIIAHIDHGKSTLADRLIEKTGFLSERETDKQILDNLELERERGITIKLKPVRMIYKAKDGNEYELNLI DTPGHVDFTYEVSRSIAACEGALLVVDATQGIEAQTLANVYMALEHDLEIVPVINKIDLPSANPEHVKKEIEDVIGIDAE DALLTSAKEGIGIEEVLEAIVNRIPPPKGDENKPLKALIFDSFYDNYKGAISFVRVVDGIVKPGMRIKMFSTGKVFEVTE VGMFRPNLYPVEELKAGEVGYIAASIKNVKDTRVGDTITDADNPADFPLPGYKEVVPMVFCGIYPADGQDYENLKEALEK LQLNDASLVFEPDTSAALGFGFRCGFLGLLHMEIVQERLEREYNLNLVTTAPSVIYKVYKTNGEVLDLDNPTKMPPPTQI DHIEEPIVEATIMVPTEYVGAVMELCQDRRGAYLGMEYLEQTRVLLKYEMPLNEIIYDFFDALKSRTRGYASFDYELKGY KESNLVKLDILINGELVDALSMIVHKDKAYEKARKIVEKLKENIPRHLFEIPIQAAIGSKIIARETVKALRKNVLAKCYG GDVTRKKKLLEKQKEGKKRMRQVGSVEIPQEAFMSILKLDDEK
Sequences:
>Translated_603_residues MSERMQYIRNFCIIAHIDHGKSTLADRLIEKTGFLSERETDKQILDNLELERERGITIKLKPVRMIYKAKDGNEYELNLI DTPGHVDFTYEVSRSIAACEGALLVVDATQGIEAQTLANVYMALEHDLEIVPVINKIDLPSANPEHVKKEIEDVIGIDAE DALLTSAKEGIGIEEVLEAIVNRIPPPKGDENKPLKALIFDSFYDNYKGAISFVRVVDGIVKPGMRIKMFSTGKVFEVTE VGMFRPNLYPVEELKAGEVGYIAASIKNVKDTRVGDTITDADNPADFPLPGYKEVVPMVFCGIYPADGQDYENLKEALEK LQLNDASLVFEPDTSAALGFGFRCGFLGLLHMEIVQERLEREYNLNLVTTAPSVIYKVYKTNGEVLDLDNPTKMPPPTQI DHIEEPIVEATIMVPTEYVGAVMELCQDRRGAYLGMEYLEQTRVLLKYEMPLNEIIYDFFDALKSRTRGYASFDYELKGY KESNLVKLDILINGELVDALSMIVHKDKAYEKARKIVEKLKENIPRHLFEIPIQAAIGSKIIARETVKALRKNVLAKCYG GDVTRKKKLLEKQKEGKKRMRQVGSVEIPQEAFMSILKLDDEK >Mature_602_residues SERMQYIRNFCIIAHIDHGKSTLADRLIEKTGFLSERETDKQILDNLELERERGITIKLKPVRMIYKAKDGNEYELNLID TPGHVDFTYEVSRSIAACEGALLVVDATQGIEAQTLANVYMALEHDLEIVPVINKIDLPSANPEHVKKEIEDVIGIDAED ALLTSAKEGIGIEEVLEAIVNRIPPPKGDENKPLKALIFDSFYDNYKGAISFVRVVDGIVKPGMRIKMFSTGKVFEVTEV GMFRPNLYPVEELKAGEVGYIAASIKNVKDTRVGDTITDADNPADFPLPGYKEVVPMVFCGIYPADGQDYENLKEALEKL QLNDASLVFEPDTSAALGFGFRCGFLGLLHMEIVQERLEREYNLNLVTTAPSVIYKVYKTNGEVLDLDNPTKMPPPTQID HIEEPIVEATIMVPTEYVGAVMELCQDRRGAYLGMEYLEQTRVLLKYEMPLNEIIYDFFDALKSRTRGYASFDYELKGYK ESNLVKLDILINGELVDALSMIVHKDKAYEKARKIVEKLKENIPRHLFEIPIQAAIGSKIIARETVKALRKNVLAKCYGG DVTRKKKLLEKQKEGKKRMRQVGSVEIPQEAFMSILKLDDEK
Specific function: Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- transloc
COG id: COG0481
COG function: function code M; Membrane GTPase LepA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. LepA subfamily [H]
Homologues:
Organism=Homo sapiens, GI157426893, Length=607, Percent_Identity=52.3887973640857, Blast_Score=669, Evalue=0.0, Organism=Homo sapiens, GI94966754, Length=245, Percent_Identity=33.8775510204082, Blast_Score=122, Evalue=9e-28, Organism=Homo sapiens, GI4503483, Length=143, Percent_Identity=39.8601398601399, Blast_Score=106, Evalue=6e-23, Organism=Homo sapiens, GI18390331, Length=158, Percent_Identity=35.4430379746835, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI310132016, Length=109, Percent_Identity=44.954128440367, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI310110807, Length=109, Percent_Identity=44.954128440367, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI310123363, Length=109, Percent_Identity=44.954128440367, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI25306283, Length=149, Percent_Identity=39.5973154362416, Blast_Score=100, Evalue=5e-21, Organism=Homo sapiens, GI25306287, Length=149, Percent_Identity=39.5973154362416, Blast_Score=100, Evalue=5e-21, Organism=Homo sapiens, GI19923640, Length=149, Percent_Identity=39.5973154362416, Blast_Score=100, Evalue=6e-21, Organism=Homo sapiens, GI217272894, Length=174, Percent_Identity=31.0344827586207, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI217272892, Length=174, Percent_Identity=31.0344827586207, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI4503471, Length=342, Percent_Identity=25.4385964912281, Blast_Score=89, Evalue=2e-17, Organism=Homo sapiens, GI53729339, Length=256, Percent_Identity=25.390625, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI53729337, Length=256, Percent_Identity=25.390625, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI94966752, Length=196, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=2e-12, Organism=Escherichia coli, GI1788922, Length=595, Percent_Identity=58.3193277310924, Blast_Score=712, Evalue=0.0, Organism=Escherichia coli, GI48994988, Length=502, Percent_Identity=29.6812749003984, Blast_Score=177, Evalue=1e-45, Organism=Escherichia coli, GI1789738, Length=181, Percent_Identity=33.7016574585635, Blast_Score=92, Evalue=9e-20, Organism=Escherichia coli, GI1790835, Length=156, Percent_Identity=30.1282051282051, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1789559, Length=222, Percent_Identity=28.3783783783784, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1790412, Length=287, Percent_Identity=29.616724738676, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1789737, Length=287, Percent_Identity=29.616724738676, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1789108, Length=177, Percent_Identity=27.1186440677966, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17557151, Length=612, Percent_Identity=41.9934640522876, Blast_Score=507, Evalue=1e-144, Organism=Caenorhabditis elegans, GI17556745, Length=461, Percent_Identity=25.1626898047722, Blast_Score=110, Evalue=2e-24, Organism=Caenorhabditis elegans, GI71988819, Length=134, Percent_Identity=38.0597014925373, Blast_Score=100, Evalue=3e-21, Organism=Caenorhabditis elegans, GI71988811, Length=134, Percent_Identity=38.0597014925373, Blast_Score=100, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17506493, Length=162, Percent_Identity=33.9506172839506, Blast_Score=96, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17552882, Length=133, Percent_Identity=36.0902255639098, Blast_Score=95, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17533571, Length=146, Percent_Identity=32.8767123287671, Blast_Score=90, Evalue=4e-18, Organism=Caenorhabditis elegans, GI32566303, Length=305, Percent_Identity=27.5409836065574, Blast_Score=86, Evalue=4e-17, Organism=Saccharomyces cerevisiae, GI6323320, Length=598, Percent_Identity=46.6555183946488, Blast_Score=543, Evalue=1e-155, Organism=Saccharomyces cerevisiae, GI6324707, Length=150, Percent_Identity=38.6666666666667, Blast_Score=112, Evalue=2e-25, Organism=Saccharomyces cerevisiae, GI6320593, Length=150, Percent_Identity=38.6666666666667, Blast_Score=112, Evalue=2e-25, Organism=Saccharomyces cerevisiae, GI6323098, Length=187, Percent_Identity=33.6898395721925, Blast_Score=102, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6322359, Length=150, Percent_Identity=36.6666666666667, Blast_Score=97, Evalue=8e-21, Organism=Saccharomyces cerevisiae, GI6324166, Length=141, Percent_Identity=37.5886524822695, Blast_Score=92, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6324761, Length=272, Percent_Identity=31.25, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI78706572, Length=602, Percent_Identity=47.5083056478405, Blast_Score=583, Evalue=1e-166, Organism=Drosophila melanogaster, GI28574573, Length=143, Percent_Identity=45.4545454545455, Blast_Score=116, Evalue=4e-26, Organism=Drosophila melanogaster, GI24582462, Length=186, Percent_Identity=34.4086021505376, Blast_Score=107, Evalue=2e-23, Organism=Drosophila melanogaster, GI221458488, Length=149, Percent_Identity=40.9395973154362, Blast_Score=99, Evalue=9e-21, Organism=Drosophila melanogaster, GI24585709, Length=154, Percent_Identity=33.7662337662338, Blast_Score=96, Evalue=5e-20, Organism=Drosophila melanogaster, GI24585711, Length=152, Percent_Identity=34.2105263157895, Blast_Score=96, Evalue=5e-20, Organism=Drosophila melanogaster, GI24585713, Length=152, Percent_Identity=34.2105263157895, Blast_Score=96, Evalue=5e-20, Organism=Drosophila melanogaster, GI21357743, Length=133, Percent_Identity=36.0902255639098, Blast_Score=90, Evalue=6e-18, Organism=Drosophila melanogaster, GI45553807, Length=340, Percent_Identity=27.0588235294118, Blast_Score=86, Evalue=8e-17, Organism=Drosophila melanogaster, GI45553816, Length=340, Percent_Identity=27.0588235294118, Blast_Score=86, Evalue=8e-17, Organism=Drosophila melanogaster, GI24651721, Length=340, Percent_Identity=27.0588235294118, Blast_Score=86, Evalue=8e-17, Organism=Drosophila melanogaster, GI17864154, Length=340, Percent_Identity=27.0588235294118, Blast_Score=86, Evalue=8e-17, Organism=Drosophila melanogaster, GI281363316, Length=297, Percent_Identity=27.6094276094276, Blast_Score=77, Evalue=4e-14, Organism=Drosophila melanogaster, GI17864358, Length=297, Percent_Identity=27.6094276094276, Blast_Score=77, Evalue=4e-14, Organism=Drosophila melanogaster, GI28572034, Length=255, Percent_Identity=27.0588235294118, Blast_Score=72, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR006297 - InterPro: IPR013842 - InterPro: IPR000795 - InterPro: IPR005225 - InterPro: IPR000640 - InterPro: IPR004161 - InterPro: IPR009000 [H]
Pfam domain/function: PF00679 EFG_C; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2; PF06421 LepA_C [H]
EC number: NA
Molecular weight: Translated: 68011; Mature: 67880
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSERMQYIRNFCIIAHIDHGKSTLADRLIEKTGFLSERETDKQILDNLELERERGITIKL CCHHHHHHHCEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHCCCEEEE KPVRMIYKAKDGNEYELNLIDTPGHVDFTYEVSRSIAACEGALLVVDATQGIEAQTLANV EEEEEEEEECCCCEEEEEEECCCCCEEEEHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH YMALEHDLEIVPVINKIDLPSANPEHVKKEIEDVIGIDAEDALLTSAKEGIGIEEVLEAI HHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHH VNRIPPPKGDENKPLKALIFDSFYDNYKGAISFVRVVDGIVKPGMRIKMFSTGKVFEVTE HHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEE VGMFRPNLYPVEELKAGEVGYIAASIKNVKDTRVGDTITDADNPADFPLPGYKEVVPMVF CCCCCCCCCCHHHCCCCCCEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH CGIYPADGQDYENLKEALEKLQLNDASLVFEPDTSAALGFGFRCGFLGLLHMEIVQERLE HCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHHHHHHH REYNLNLVTTAPSVIYKVYKTNGEVLDLDNPTKMPPPTQIDHIEEPIVEATIMVPTEYVG HHCCCEEEECCHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHEEEECCHHHHH AVMELCQDRRGAYLGMEYLEQTRVLLKYEMPLNEIIYDFFDALKSRTRGYASFDYELKGY HHHHHHHHHCCCCHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCC KESNLVKLDILINGELVDALSMIVHKDKAYEKARKIVEKLKENIPRHLFEIPIQAAIGSK CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH IIARETVKALRKNVLAKCYGGDVTRKKKLLEKQKEGKKRMRQVGSVEIPQEAFMSILKLD HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC DEK CCC >Mature Secondary Structure SERMQYIRNFCIIAHIDHGKSTLADRLIEKTGFLSERETDKQILDNLELERERGITIKL CHHHHHHHCEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHCCCEEEE KPVRMIYKAKDGNEYELNLIDTPGHVDFTYEVSRSIAACEGALLVVDATQGIEAQTLANV EEEEEEEEECCCCEEEEEEECCCCCEEEEHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH YMALEHDLEIVPVINKIDLPSANPEHVKKEIEDVIGIDAEDALLTSAKEGIGIEEVLEAI HHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHH VNRIPPPKGDENKPLKALIFDSFYDNYKGAISFVRVVDGIVKPGMRIKMFSTGKVFEVTE HHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEE VGMFRPNLYPVEELKAGEVGYIAASIKNVKDTRVGDTITDADNPADFPLPGYKEVVPMVF CCCCCCCCCCHHHCCCCCCEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH CGIYPADGQDYENLKEALEKLQLNDASLVFEPDTSAALGFGFRCGFLGLLHMEIVQERLE HCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHHHHHHH REYNLNLVTTAPSVIYKVYKTNGEVLDLDNPTKMPPPTQIDHIEEPIVEATIMVPTEYVG HHCCCEEEECCHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHEEEECCHHHHH AVMELCQDRRGAYLGMEYLEQTRVLLKYEMPLNEIIYDFFDALKSRTRGYASFDYELKGY HHHHHHHHHCCCCHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCC KESNLVKLDILINGELVDALSMIVHKDKAYEKARKIVEKLKENIPRHLFEIPIQAAIGSK CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH IIARETVKALRKNVLAKCYGGDVTRKKKLLEKQKEGKKRMRQVGSVEIPQEAFMSILKLD HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC DEK CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA