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The map label for this gene is ykfC [H]

Identifier: 167040650

GI number: 167040650

Start: 2036293

End: 2037705

Strand: Reverse

Name: ykfC [H]

Synonym: Teth514_2027

Alternate gene names: 167040650

Gene position: 2037705-2036293 (Counterclockwise)

Preceding gene: 167040651

Following gene: 167040649

Centisome position: 82.93

GC content: 37.08

Gene sequence:

>1413_bases
ATGGACTCGAAAGATATGCAGAGACTGCAGACAACTCAACAAAGAGGCTATCCGTTGAATAGAGAAATGGAATTTCAAAA
GACAACGGAAGTGCATAGTATATCATCGGCGTCAAAAGATAGAAGAAACGATGTACAAAGATATACCAGCAAGATGCTTG
AAATGATAGTAGAACGAGGAAACATGAGAGCAGCATACAAGCGCGTTGTTGCAAATAAAGGAAGCCATGGAGTCGATGGG
ATGGAAGTAGATGAACTTCTACCGTATCTCAAAGAAAACTGGGCAACCATAAAACAACAACTGCTGGAGGGGAAATACAA
ACCACAACCAGTGCGAAGAGTAGAAATTTCCAAACCAGATGGAGGAGTAAGACTACTAGGAATACCTACAGCACTAGATA
GGCTAATACAACAAGCAATAGCCCAAATACTAAATAGAGTCTACAACCATACATTTTCTGATAGCAGTTATGGATTTAGA
CCAGGACGCAGTGCAAAAGACGCAATAAAAGCCGCAGAAGCATATATAAATGAAGGATATACATGGGTTGTAGATATGGA
CTTAGAAAAGTTCTTTGACAGAGTAAACCACGACATAATAATGTCCAAACTAGAAAAGCGGATAGGAGACAAAAGGGTAC
TAAAGTTAATACGAAGATACCTAGAATCAGGAGTAATGATAAACGGAATCAAAGTATCAACAGAAGAAGGGACACCCCAA
GGAGGGCCATTAAGTCCCCTATTAGCAAACATAATGTTGGACGAACTAGACAAAGAACTTGAGAAACGAGGGCATAAATT
CTGCCGATATGCAGATGACTGCAACATATATGTAAAAAGCAGGTCTGCAGGAAACAGAGTAATGAAGAGCATAAAGAAAT
TCATAGAAAGCAAATTAAAACTAAAAGTCAACGAAGCAAAAAGTGCTGTAGATAGACCATGGAGAAGAAAATTTCTTGGA
TTTTCATTCTACACAAAAGAAAACGAAGTAAGAATAAGAATCCATGAAAAATCCATCAAAAGGTTTAAGGAAAAAGTAAG
AGAAATAACCAATCGGAACAAGGGAATAAGCATGGAAAACAGAATAAAAAGACTAAATCAAATAACAACAGGATGGGTCA
ACTATTTTGGATTAGCAGACGCAAAAAGCATAATGAAAACCCTTGACGAATGGATAAGGCGAAGACTAAGGGCATGTATA
TGGAAACAATGGAAGAAGATAAAAACGAAGCATGATAACCTAGTAAAACTAGGAGTAGAAGATCAAAAAGCCTGGGAATA
CACCAATACAAGGAAAGGCTACTGGAGAATATCCAATAGCCCAATCCTAAATAAGACTCTTACAAATAATTACTTTGAAA
GCATAGGTTATAAGAGTTTATCCCAAAGATATCTAATTGTACATAAATCCTAA

Upstream 100 bases:

>100_bases
GATGTATGGCTGAACCTTGAGAAGTCAGCAGAGGTCATAGTACTTATCTAGACATGAATAGATAAGGAAGGACCGAACGT
TAGGAGGTTTTGGAAATCTT

Downstream 100 bases:

>100_bases
TGAACCGCCGTATACCGAACGGTACGTACGGTGGTGTGAGAGGACGCTGAATAAAATAATTATTCAGCTCCTACTCGATA
TAGTGATTGACTCTTTATTA

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASKDRRNDVQRYTSKMLEMIVERGNMRAAYKRVVANKGSHGVDG
MEVDELLPYLKENWATIKQQLLEGKYKPQPVRRVEISKPDGGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFR
PGRSAKDAIKAAEAYINEGYTWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGIKVSTEEGTPQ
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKLKLKVNEAKSAVDRPWRRKFLG
FSFYTKENEVRIRIHEKSIKRFKEKVREITNRNKGISMENRIKRLNQITTGWVNYFGLADAKSIMKTLDEWIRRRLRACI
WKQWKKIKTKHDNLVKLGVEDQKAWEYTNTRKGYWRISNSPILNKTLTNNYFESIGYKSLSQRYLIVHKS

Sequences:

>Translated_470_residues
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASKDRRNDVQRYTSKMLEMIVERGNMRAAYKRVVANKGSHGVDG
MEVDELLPYLKENWATIKQQLLEGKYKPQPVRRVEISKPDGGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFR
PGRSAKDAIKAAEAYINEGYTWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGIKVSTEEGTPQ
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKLKLKVNEAKSAVDRPWRRKFLG
FSFYTKENEVRIRIHEKSIKRFKEKVREITNRNKGISMENRIKRLNQITTGWVNYFGLADAKSIMKTLDEWIRRRLRACI
WKQWKKIKTKHDNLVKLGVEDQKAWEYTNTRKGYWRISNSPILNKTLTNNYFESIGYKSLSQRYLIVHKS
>Mature_470_residues
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASKDRRNDVQRYTSKMLEMIVERGNMRAAYKRVVANKGSHGVDG
MEVDELLPYLKENWATIKQQLLEGKYKPQPVRRVEISKPDGGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFR
PGRSAKDAIKAAEAYINEGYTWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGIKVSTEEGTPQ
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKLKLKVNEAKSAVDRPWRRKFLG
FSFYTKENEVRIRIHEKSIKRFKEKVREITNRNKGISMENRIKRLNQITTGWVNYFGLADAKSIMKTLDEWIRRRLRACI
WKQWKKIKTKHDNLVKLGVEDQKAWEYTNTRKGYWRISNSPILNKTLTNNYFESIGYKSLSQRYLIVHKS

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=240, Percent_Identity=31.25, Blast_Score=127, Evalue=4e-30,
Organism=Saccharomyces cerevisiae, GI6226520, Length=205, Percent_Identity=31.7073170731707, Blast_Score=108, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 55003; Mature: 55003

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASKDRRNDVQRYTSKMLEMIVERG
CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NMRAAYKRVVANKGSHGVDGMEVDELLPYLKENWATIKQQLLEGKYKPQPVRRVEISKPD
CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
GGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFRPGRSAKDAIKAAEAYINEGY
CCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
TWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGIKVSTEEGTPQ
EEEEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKLK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
LKVNEAKSAVDRPWRRKFLGFSFYTKENEVRIRIHEKSIKRFKEKVREITNRNKGISMEN
HHHHHHHHHHCCHHHHHHHCCEEEECCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHH
RIKRLNQITTGWVNYFGLADAKSIMKTLDEWIRRRLRACIWKQWKKIKTKHDNLVKLGVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
DQKAWEYTNTRKGYWRISNSPILNKTLTNNYFESIGYKSLSQRYLIVHKS
CHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHCCCEEEEECC
>Mature Secondary Structure
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASKDRRNDVQRYTSKMLEMIVERG
CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NMRAAYKRVVANKGSHGVDGMEVDELLPYLKENWATIKQQLLEGKYKPQPVRRVEISKPD
CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
GGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFRPGRSAKDAIKAAEAYINEGY
CCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
TWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGIKVSTEEGTPQ
EEEEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKLK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
LKVNEAKSAVDRPWRRKFLGFSFYTKENEVRIRIHEKSIKRFKEKVREITNRNKGISMEN
HHHHHHHHHHCCHHHHHHHCCEEEECCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHH
RIKRLNQITTGWVNYFGLADAKSIMKTLDEWIRRRLRACIWKQWKKIKTKHDNLVKLGVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
DQKAWEYTNTRKGYWRISNSPILNKTLTNNYFESIGYKSLSQRYLIVHKS
CHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]