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The map label for this gene is ytdP [H]

Identifier: 167040587

GI number: 167040587

Start: 1967413

End: 1969005

Strand: Reverse

Name: ytdP [H]

Synonym: Teth514_1958

Alternate gene names: 167040587

Gene position: 1969005-1967413 (Counterclockwise)

Preceding gene: 167040588

Following gene: 167040586

Centisome position: 80.13

GC content: 29.76

Gene sequence:

>1593_bases
ATGAAATACAAAGCAATGATTTGTGATGATGAGCCTTTAGAAAGAGAAGTACTTTCTATGATTGTTGATAAAACAGGTTT
GCCAATTGAAGTAATATGCGATGCCAAAAATGGAAATGATGCAATTAATAAAGCTAAAGAATTTCAACCTGATATAATCT
TTATGGATGTTAAAATGCCAGGAATTGACGGAATAACTGCTGCAAAGGAGATAATAACTTTTCTTCCCAACGTGAAGTTA
ATAATAATAACTGCTTATGATGAATTTGAATATCTCAAAGAAGCTTTAAAATTGGGTGTTATTGAATATCTTTTAAAACC
TGTAACTCCAGAAGAGGTTGAGACGGTTGCCCGAAAAGTAATAGAAATCTTTGAGAATGAAAGGTTAAATGAAAAAAGAG
AAGAAGAAACAAGGAAGATTATACAAGATATGAGTAAAATTATAAAAACAGGAATATTAGCGGCAAAAATTCTGGGGTGC
TTTTTTGAAGAAGAAGTATCTGATATAGAAATGAAATATTTAGGAATACAATCACTCCCCAACTCCGTATTAATAATTGT
TCCAGAAATTGAAACTCAAAGCAAAAAAATAATACACAATAAATATGCTGTGTACCATACAATTGAAAAAATTACAAGAA
AACATTCAGACATTTTTGTACTTGCTTTAGGAGAAAAAATAGTTATTGGATTTAATGGTAGTAAATACGATAGATATGAG
CTAGCAATTAAATTGAAAGAAGAAGTGGAAACAAAGACAGGAATTATTACTACAATTGGAATAAGTGATATAGGAGAATT
TAATAATTTAAAAAAGTTATTTGAAGAAACAGATGAAATGGTGAAATTAGGAAAATTTTTTCTAGGAGAAGGAAATATAA
TAAAGAAGGAAGATATAGAAGTATTTCTAAAGCCTCACTTTGTTTCTTTAAATACCAAAAGGAAGCAAGAAGAAATGATA
GAATTTTTACAATTAGGGGATAGTCAAAAAGCGCTCCAACTTCTAAAGGAGGTTGTAGGGGAAATTCTAACAACAACTAA
AAACAATTTATTGGAATGCCAAATAAATCTTATAGAGATAATGATGAGAATAGTCAAAACAATAAGTGAAGTAGGAATGC
TAACTGGTGAAGAAGGCAGAGTATTTCAATTTTGCTTTAGTCATTTGCAAAAACTTATGAGGACTCAAAATTATAGAGGT
ATTACCTTGTGGGCTACATCATTTTTAGAAGAAATTAGCGATCTTTTTGCTGGTGCCAAAAGGAATGAGAATAATATAGT
CGAACGAGTAGTAAAGTATATAAATGAGAATTTTGAAAAAGAAATAAGGTTAAAAGAACTTTCTCAAACAATATATCTTA
ATCCTGAATATTTTAGTAGACTTTTTAAGAAAGAGGTTGGATGCACCTATGCTGAATATCTTACACGAATAAGAATTGAG
GCAGCGAAAAAATATCTAGCTAATCCTTCGTTAACAATTTCTGAAATTGCAAGAAAGGTTGGCTATCAAGATGCTAATTA
TTTCAGTAAAGTATTTAAAAAAGTTGTTGGAATTTCTCCTAGTGAGTTTAGAAAATTGGCTCTTTGTCAATAG

Upstream 100 bases:

>100_bases
TTTGGAAAAGAATATGGGTTAGAAATAAGGAGCGAAAAAGGAAATGGCACTTTAGTTGTTTTAAAAATACCGATAATTAA
GAAAGAGGTGGGAAAATATA

Downstream 100 bases:

>100_bases
TTGGGGTGGGTATTTTTTCTGAATGCCAACCTTTAAATTTTATCACATAATATGGTAATGATTGTTAGTTATTAGTTATA
ATAAGAGAGAGAGAGAGAGT

Product: response regulator receiver protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MKYKAMICDDEPLEREVLSMIVDKTGLPIEVICDAKNGNDAINKAKEFQPDIIFMDVKMPGIDGITAAKEIITFLPNVKL
IIITAYDEFEYLKEALKLGVIEYLLKPVTPEEVETVARKVIEIFENERLNEKREEETRKIIQDMSKIIKTGILAAKILGC
FFEEEVSDIEMKYLGIQSLPNSVLIIVPEIETQSKKIIHNKYAVYHTIEKITRKHSDIFVLALGEKIVIGFNGSKYDRYE
LAIKLKEEVETKTGIITTIGISDIGEFNNLKKLFEETDEMVKLGKFFLGEGNIIKKEDIEVFLKPHFVSLNTKRKQEEMI
EFLQLGDSQKALQLLKEVVGEILTTTKNNLLECQINLIEIMMRIVKTISEVGMLTGEEGRVFQFCFSHLQKLMRTQNYRG
ITLWATSFLEEISDLFAGAKRNENNIVERVVKYINENFEKEIRLKELSQTIYLNPEYFSRLFKKEVGCTYAEYLTRIRIE
AAKKYLANPSLTISEIARKVGYQDANYFSKVFKKVVGISPSEFRKLALCQ

Sequences:

>Translated_530_residues
MKYKAMICDDEPLEREVLSMIVDKTGLPIEVICDAKNGNDAINKAKEFQPDIIFMDVKMPGIDGITAAKEIITFLPNVKL
IIITAYDEFEYLKEALKLGVIEYLLKPVTPEEVETVARKVIEIFENERLNEKREEETRKIIQDMSKIIKTGILAAKILGC
FFEEEVSDIEMKYLGIQSLPNSVLIIVPEIETQSKKIIHNKYAVYHTIEKITRKHSDIFVLALGEKIVIGFNGSKYDRYE
LAIKLKEEVETKTGIITTIGISDIGEFNNLKKLFEETDEMVKLGKFFLGEGNIIKKEDIEVFLKPHFVSLNTKRKQEEMI
EFLQLGDSQKALQLLKEVVGEILTTTKNNLLECQINLIEIMMRIVKTISEVGMLTGEEGRVFQFCFSHLQKLMRTQNYRG
ITLWATSFLEEISDLFAGAKRNENNIVERVVKYINENFEKEIRLKELSQTIYLNPEYFSRLFKKEVGCTYAEYLTRIRIE
AAKKYLANPSLTISEIARKVGYQDANYFSKVFKKVVGISPSEFRKLALCQ
>Mature_530_residues
MKYKAMICDDEPLEREVLSMIVDKTGLPIEVICDAKNGNDAINKAKEFQPDIIFMDVKMPGIDGITAAKEIITFLPNVKL
IIITAYDEFEYLKEALKLGVIEYLLKPVTPEEVETVARKVIEIFENERLNEKREEETRKIIQDMSKIIKTGILAAKILGC
FFEEEVSDIEMKYLGIQSLPNSVLIIVPEIETQSKKIIHNKYAVYHTIEKITRKHSDIFVLALGEKIVIGFNGSKYDRYE
LAIKLKEEVETKTGIITTIGISDIGEFNNLKKLFEETDEMVKLGKFFLGEGNIIKKEDIEVFLKPHFVSLNTKRKQEEMI
EFLQLGDSQKALQLLKEVVGEILTTTKNNLLECQINLIEIMMRIVKTISEVGMLTGEEGRVFQFCFSHLQKLMRTQNYRG
ITLWATSFLEEISDLFAGAKRNENNIVERVVKYINENFEKEIRLKELSQTIYLNPEYFSRLFKKEVGCTYAEYLTRIRIE
AAKKYLANPSLTISEIARKVGYQDANYFSKVFKKVVGISPSEFRKLALCQ

Specific function: Unknown

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=124, Percent_Identity=33.0645161290323, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1788550, Length=148, Percent_Identity=30.4054054054054, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1786251, Length=102, Percent_Identity=34.3137254901961, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787987, Length=144, Percent_Identity=29.1666666666667, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1788725, Length=98, Percent_Identity=24.4897959183673, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1790559, Length=108, Percent_Identity=26.8518518518519, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI87082052, Length=119, Percent_Identity=33.6134453781513, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788222, Length=116, Percent_Identity=31.8965517241379, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790437, Length=116, Percent_Identity=29.3103448275862, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 60999; Mature: 60999

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKAMICDDEPLEREVLSMIVDKTGLPIEVICDAKNGNDAINKAKEFQPDIIFMDVKMP
CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEEEECC
GIDGITAAKEIITFLPNVKLIIITAYDEFEYLKEALKLGVIEYLLKPVTPEEVETVARKV
CCCCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IEIFENERLNEKREEETRKIIQDMSKIIKTGILAAKILGCFFEEEVSDIEMKYLGIQSLP
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NSVLIIVPEIETQSKKIIHNKYAVYHTIEKITRKHSDIFVLALGEKIVIGFNGSKYDRYE
CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCCCCEEH
LAIKLKEEVETKTGIITTIGISDIGEFNNLKKLFEETDEMVKLGKFFLGEGNIIKKEDIE
EEEEEHHHHHHHCCEEEEECCHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCE
VFLKPHFVSLNTKRKQEEMIEFLQLGDSQKALQLLKEVVGEILTTTKNNLLECQINLIEI
EEECCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHH
MMRIVKTISEVGMLTGEEGRVFQFCFSHLQKLMRTQNYRGITLWATSFLEEISDLFAGAK
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCC
RNENNIVERVVKYINENFEKEIRLKELSQTIYLNPEYFSRLFKKEVGCTYAEYLTRIRIE
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHEEECHHHHHHHHHHHHCCHHHHHHHHHHHH
AAKKYLANPSLTISEIARKVGYQDANYFSKVFKKVVGISPSEFRKLALCQ
HHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MKYKAMICDDEPLEREVLSMIVDKTGLPIEVICDAKNGNDAINKAKEFQPDIIFMDVKMP
CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEEEECC
GIDGITAAKEIITFLPNVKLIIITAYDEFEYLKEALKLGVIEYLLKPVTPEEVETVARKV
CCCCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IEIFENERLNEKREEETRKIIQDMSKIIKTGILAAKILGCFFEEEVSDIEMKYLGIQSLP
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NSVLIIVPEIETQSKKIIHNKYAVYHTIEKITRKHSDIFVLALGEKIVIGFNGSKYDRYE
CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCCCCEEH
LAIKLKEEVETKTGIITTIGISDIGEFNNLKKLFEETDEMVKLGKFFLGEGNIIKKEDIE
EEEEEHHHHHHHCCEEEEECCHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCE
VFLKPHFVSLNTKRKQEEMIEFLQLGDSQKALQLLKEVVGEILTTTKNNLLECQINLIEI
EEECCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHH
MMRIVKTISEVGMLTGEEGRVFQFCFSHLQKLMRTQNYRGITLWATSFLEEISDLFAGAK
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCC
RNENNIVERVVKYINENFEKEIRLKELSQTIYLNPEYFSRLFKKEVGCTYAEYLTRIRIE
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHEEECHHHHHHHHHHHHCCHHHHHHHHHHHH
AAKKYLANPSLTISEIARKVGYQDANYFSKVFKKVVGISPSEFRKLALCQ
HHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]