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The map label for this gene is ygeV [C]

Identifier: 167040555

GI number: 167040555

Start: 1937315

End: 1939042

Strand: Reverse

Name: ygeV [C]

Synonym: Teth514_1926

Alternate gene names: 167040555

Gene position: 1939042-1937315 (Counterclockwise)

Preceding gene: 167040556

Following gene: 167040554

Centisome position: 78.91

GC content: 30.73

Gene sequence:

>1728_bases
ATGAAAGAAAAAATTGCTCGATTTGTTAACAAAAAAATAATATTGTTCAGGGAAGAAGACCTAAATAGAAATGGCAAAAT
TAATTTTAAAAAGTATAATTATATTATATTAACTTCTAATCGTTTACCTCAAAAAATAATTCCAATATTAGAAAATGGGA
ATACAGCTGAACGTTTAGCTATAACATCCTTTTTGACAGTTAAGGAAAACGAAGATATTGATTTAGAAAGTTATAATGGG
GAAGTTTTTTTGGTGACTGACGATTACAATGAGATAAAAGGTGTTGTTACAAATAGAGAAATAATCTTTTTCTTACTAGA
TAATTTAAAATCTATTAAGGCTGAATTTGACCTTGTCAAAACTGACCTTGACGCTTTTATGGCGTGTTCAGACGATTTGG
CCTGTATTACAGACGGATCTGGTTTAAAAGTGAGAATTAGCTCTTCTGCTGAAAAAATATATGGTTTAAAACCGGAAGAT
CTCATAGGTAAAAATGTGAGTGAACTTGAAAAGAATGGTATGTATTTTCCGTCAGCTACAAAGATTGCTATTGAGGAAAA
AAAGAAAGTTACTGTAATTCAAAAAACAAAGACAGGCAGAAAATTATTAGTTACAGCTACACCATTTTTTGATAAAGATA
ATAACATTAAAAGAATTGTTAGTATATCAAAAGACATTACAGACGAGGAAAAATTAAAGACTGAGTTAAAACAAACAAAA
GAATTACTTCAAAAATATGAAGAGGAACTATCTTCACTTAGAATTGCCCATCTTAAGAATTCTGAGATTATCTATAGAAG
TAAACAAATGGAAAGATTGATAGAATTAGTAAATAAAGTCGCACCTACAGAATCTACTATTCTTATTTATGGAGAAACAG
GGGTAGGAAAGGAAGTTTTAGCAAAATACATTCATAATATCAGCAGAAGTGAGGGACCATTCATAAAAATAAACTGTGGA
GCGATACCTGAGAATCTTTTAGAAGCAGAGCTGTTTGGTTATGAGAAAGGGGCATTTACAGGAGCAAAAAGCGAAGGTAA
ACCGGGGCTTATTGAAGTTGCAGATAAGGGAACTTTATTATTAGATGAGATTAGTGAACTGCCTTTATCATTGCAAGTAA
AATTATTAAGAGTTTTACAAGAAAAAGAATTTATTAGAGTAGGTGGTATAAAACCTATCAAAGTAGATGTACGAATAATT
GCTGCTTCAAATAAAGACTTAAAAGAATTGGTGAAAGAAGGAAAATTTAGACAAGATTTATACTATAGATTGAATGTAGT
TCCTGTTACTATACCTCCATTAAGAGAGAGGGTTCAAGATATACCTATATTGGCTTATCATTTTCTTAATATGTATAATG
AGAAATACGGTCATTCCAAACAACTAACTAATGAAGTAATGGAAATATTTATGAAGTATCCCTGGCCAGGTAATGTTCGT
GAATTAGAAAATGTTATAGAAAGAATTGTGATAATTTCTGAAAATGATCAGATAACAAAAAAAGATTTACCTGGAGAATT
ACTTAACCAAGAAGAAACAAATCACTCTTTTGGAGTGCATGTTTCCAGATTGATGCCATTAAAAGAGGCAAGTGCTCTTG
TAGAGTATCAGCTTATAAAACAAGCCATAGAAGAATGTGGAAGCAGTTATAAGGCAGCGGAAGTATTAGGAGTAGATCAA
TCTACAATAATAAGGAAACTAAAGAAATACGAGTCAATGTTATCATAA

Upstream 100 bases:

>100_bases
GATTTATAAAATATAACACATAAAAAGTTTAAAAAGTTACGTGAGGTGACAATACTTGATTTATCTTAGTCTTAATTTTA
TTTAAAAGGTGTGATGTTTT

Downstream 100 bases:

>100_bases
ACTTTAATGCAATTATGCAGTTATTAGATTTTTTAAATGCATTAAATCATTAACAAATTGAACTATTTGATGTAAATAAA
ATATTATGCATTCCAATTAT

Product: sigma-54 dependent trancsriptional regulator

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 575; Mature: 575

Protein sequence:

>575_residues
MKEKIARFVNKKIILFREEDLNRNGKINFKKYNYIILTSNRLPQKIIPILENGNTAERLAITSFLTVKENEDIDLESYNG
EVFLVTDDYNEIKGVVTNREIIFFLLDNLKSIKAEFDLVKTDLDAFMACSDDLACITDGSGLKVRISSSAEKIYGLKPED
LIGKNVSELEKNGMYFPSATKIAIEEKKKVTVIQKTKTGRKLLVTATPFFDKDNNIKRIVSISKDITDEEKLKTELKQTK
ELLQKYEEELSSLRIAHLKNSEIIYRSKQMERLIELVNKVAPTESTILIYGETGVGKEVLAKYIHNISRSEGPFIKINCG
AIPENLLEAELFGYEKGAFTGAKSEGKPGLIEVADKGTLLLDEISELPLSLQVKLLRVLQEKEFIRVGGIKPIKVDVRII
AASNKDLKELVKEGKFRQDLYYRLNVVPVTIPPLRERVQDIPILAYHFLNMYNEKYGHSKQLTNEVMEIFMKYPWPGNVR
ELENVIERIVIISENDQITKKDLPGELLNQEETNHSFGVHVSRLMPLKEASALVEYQLIKQAIEECGSSYKAAEVLGVDQ
STIIRKLKKYESMLS

Sequences:

>Translated_575_residues
MKEKIARFVNKKIILFREEDLNRNGKINFKKYNYIILTSNRLPQKIIPILENGNTAERLAITSFLTVKENEDIDLESYNG
EVFLVTDDYNEIKGVVTNREIIFFLLDNLKSIKAEFDLVKTDLDAFMACSDDLACITDGSGLKVRISSSAEKIYGLKPED
LIGKNVSELEKNGMYFPSATKIAIEEKKKVTVIQKTKTGRKLLVTATPFFDKDNNIKRIVSISKDITDEEKLKTELKQTK
ELLQKYEEELSSLRIAHLKNSEIIYRSKQMERLIELVNKVAPTESTILIYGETGVGKEVLAKYIHNISRSEGPFIKINCG
AIPENLLEAELFGYEKGAFTGAKSEGKPGLIEVADKGTLLLDEISELPLSLQVKLLRVLQEKEFIRVGGIKPIKVDVRII
AASNKDLKELVKEGKFRQDLYYRLNVVPVTIPPLRERVQDIPILAYHFLNMYNEKYGHSKQLTNEVMEIFMKYPWPGNVR
ELENVIERIVIISENDQITKKDLPGELLNQEETNHSFGVHVSRLMPLKEASALVEYQLIKQAIEECGSSYKAAEVLGVDQ
STIIRKLKKYESMLS
>Mature_575_residues
MKEKIARFVNKKIILFREEDLNRNGKINFKKYNYIILTSNRLPQKIIPILENGNTAERLAITSFLTVKENEDIDLESYNG
EVFLVTDDYNEIKGVVTNREIIFFLLDNLKSIKAEFDLVKTDLDAFMACSDDLACITDGSGLKVRISSSAEKIYGLKPED
LIGKNVSELEKNGMYFPSATKIAIEEKKKVTVIQKTKTGRKLLVTATPFFDKDNNIKRIVSISKDITDEEKLKTELKQTK
ELLQKYEEELSSLRIAHLKNSEIIYRSKQMERLIELVNKVAPTESTILIYGETGVGKEVLAKYIHNISRSEGPFIKINCG
AIPENLLEAELFGYEKGAFTGAKSEGKPGLIEVADKGTLLLDEISELPLSLQVKLLRVLQEKEFIRVGGIKPIKVDVRII
AASNKDLKELVKEGKFRQDLYYRLNVVPVTIPPLRERVQDIPILAYHFLNMYNEKYGHSKQLTNEVMEIFMKYPWPGNVR
ELENVIERIVIISENDQITKKDLPGELLNQEETNHSFGVHVSRLMPLKEASALVEYQLIKQAIEECGSSYKAAEVLGVDQ
STIIRKLKKYESMLS

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=342, Percent_Identity=42.6900584795322, Blast_Score=291, Evalue=1e-79,
Organism=Escherichia coli, GI87082117, Length=394, Percent_Identity=40.8629441624365, Blast_Score=278, Evalue=7e-76,
Organism=Escherichia coli, GI1788550, Length=336, Percent_Identity=44.047619047619, Blast_Score=273, Evalue=3e-74,
Organism=Escherichia coli, GI1790437, Length=310, Percent_Identity=44.5161290322581, Blast_Score=259, Evalue=5e-70,
Organism=Escherichia coli, GI1789087, Length=317, Percent_Identity=44.794952681388, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI1790299, Length=330, Percent_Identity=41.2121212121212, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI1788905, Length=250, Percent_Identity=48, Blast_Score=236, Evalue=2e-63,
Organism=Escherichia coli, GI1786524, Length=326, Percent_Identity=40.1840490797546, Blast_Score=235, Evalue=4e-63,
Organism=Escherichia coli, GI87082152, Length=326, Percent_Identity=39.5705521472393, Blast_Score=217, Evalue=2e-57,
Organism=Escherichia coli, GI87081872, Length=308, Percent_Identity=39.9350649350649, Blast_Score=209, Evalue=4e-55,
Organism=Escherichia coli, GI1787583, Length=374, Percent_Identity=32.620320855615, Blast_Score=200, Evalue=2e-52,
Organism=Escherichia coli, GI87081858, Length=474, Percent_Identity=27.4261603375527, Blast_Score=165, Evalue=7e-42,
Organism=Escherichia coli, GI1789828, Length=251, Percent_Identity=36.2549800796813, Blast_Score=158, Evalue=9e-40,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR002078 [H]

Pfam domain/function: PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 65492; Mature: 65492

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKIARFVNKKIILFREEDLNRNGKINFKKYNYIILTSNRLPQKIIPILENGNTAERLA
CHHHHHHHHCCEEEEEEECCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHCCCCCHHHEE
ITSFLTVKENEDIDLESYNGEVFLVTDDYNEIKGVVTNREIIFFLLDNLKSIKAEFDLVK
EEEEEEEECCCCCCEEECCCEEEEEECCHHHHCCEEECCEEEEEEHHHHHHHHHHHHHHH
TDLDAFMACSDDLACITDGSGLKVRISSSAEKIYGLKPEDLIGKNVSELEKNGMYFPSAT
HHHHHHHHCCCCCEEEECCCCCEEEECCCCHHHCCCCCHHHHCCCHHHHHHCCCCCCCCC
KIAIEEKKKVTVIQKTKTGRKLLVTATPFFDKDNNIKRIVSISKDITDEEKLKTELKQTK
EEEEECCCEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
ELLQKYEEELSSLRIAHLKNSEIIYRSKQMERLIELVNKVAPTESTILIYGETGVGKEVL
HHHHHHHHHHHHEEHHEECCCCEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHH
AKYIHNISRSEGPFIKINCGAIPENLLEAELFGYEKGAFTGAKSEGKPGLIEVADKGTLL
HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCEE
LDEISELPLSLQVKLLRVLQEKEFIRVGGIKPIKVDVRIIAASNKDLKELVKEGKFRQDL
HHHHHHCCHHHHHHHHHHHHHCCEEEECCCCEEEEEEEEEEECCHHHHHHHHCCCCHHCE
YYRLNVVPVTIPPLRERVQDIPILAYHFLNMYNEKYGHSKQLTNEVMEIFMKYPWPGNVR
EEEEEEEEEECHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHH
ELENVIERIVIISENDQITKKDLPGELLNQEETNHSFGVHVSRLMPLKEASALVEYQLIK
HHHHHHHHEEEECCCCCCCCCCCCHHHHCCCCCCCCCCEEHHHHCCHHHHHHHHHHHHHH
QAIEECGSSYKAAEVLGVDQSTIIRKLKKYESMLS
HHHHHHCCCCCHHHEECCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKEKIARFVNKKIILFREEDLNRNGKINFKKYNYIILTSNRLPQKIIPILENGNTAERLA
CHHHHHHHHCCEEEEEEECCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHCCCCCHHHEE
ITSFLTVKENEDIDLESYNGEVFLVTDDYNEIKGVVTNREIIFFLLDNLKSIKAEFDLVK
EEEEEEEECCCCCCEEECCCEEEEEECCHHHHCCEEECCEEEEEEHHHHHHHHHHHHHHH
TDLDAFMACSDDLACITDGSGLKVRISSSAEKIYGLKPEDLIGKNVSELEKNGMYFPSAT
HHHHHHHHCCCCCEEEECCCCCEEEECCCCHHHCCCCCHHHHCCCHHHHHHCCCCCCCCC
KIAIEEKKKVTVIQKTKTGRKLLVTATPFFDKDNNIKRIVSISKDITDEEKLKTELKQTK
EEEEECCCEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
ELLQKYEEELSSLRIAHLKNSEIIYRSKQMERLIELVNKVAPTESTILIYGETGVGKEVL
HHHHHHHHHHHHEEHHEECCCCEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHH
AKYIHNISRSEGPFIKINCGAIPENLLEAELFGYEKGAFTGAKSEGKPGLIEVADKGTLL
HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCEE
LDEISELPLSLQVKLLRVLQEKEFIRVGGIKPIKVDVRIIAASNKDLKELVKEGKFRQDL
HHHHHHCCHHHHHHHHHHHHHCCEEEECCCCEEEEEEEEEEECCHHHHHHHHCCCCHHCE
YYRLNVVPVTIPPLRERVQDIPILAYHFLNMYNEKYGHSKQLTNEVMEIFMKYPWPGNVR
EEEEEEEEEECHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHH
ELENVIERIVIISENDQITKKDLPGELLNQEETNHSFGVHVSRLMPLKEASALVEYQLIK
HHHHHHHHEEEECCCCCCCCCCCCHHHHCCCCCCCCCCEEHHHHCCHHHHHHHHHHHHHH
QAIEECGSSYKAAEVLGVDQSTIIRKLKKYESMLS
HHHHHHCCCCCHHHEECCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1732229 [H]