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The map label for this gene is cdaR [C]

Identifier: 167040528

GI number: 167040528

Start: 1911502

End: 1912647

Strand: Reverse

Name: cdaR [C]

Synonym: Teth514_1897

Alternate gene names: 167040528

Gene position: 1912647-1911502 (Counterclockwise)

Preceding gene: 167040529

Following gene: 167040527

Centisome position: 77.84

GC content: 27.4

Gene sequence:

>1146_bases
ATGCTCAGTCATGAGGATTATCAAAAGATTGTAAATAGGCTTATGAATATTCTTGGCAAAAATATAAACATTATGGATAC
AAAAGGGGTAATTATAGCATCAGGAGATTCTACAAGGATAGGCTCTTTCCATGAAGGGGCAAAAATTGCAGCCTCGAGAA
AGATTGATGTTATTATAGATGATAGCAATATAGAATATTACAAAGGAACTAAAAAAGGGATAAACATTCCTTTGTTTTAT
AATGGTGAAGTAATAGGTGTTGTTGGAATTACGGGTGAACCAAAAGAAATAATTGGCTTTGGTAGAATAATTAAAGAATT
AGTTGAGCTTATGATTCAAGAATATGAGAATAAAAAATATGAAGCATTACATTCGAGAGCAATGGTAAGTTTCATTAAAG
AAATTCTCAATCACCCTAATATAGGGCATGAGGAAGAAAAAATTTTAAAAAGCAGGGCTAAACTTATAGGCTTTGATATA
AAAAAGCAGAGAAGTTTAATTGTTGCTGATATTAGAGGCTTTAATGATTTCATTTTATCCAAAAACTTGAAAGAGATAGA
TATTCAAGAATTAAAGGAAAACATTGTAGAATTTATAAAAAGTAAATTAAATCACGATGAGATAGTCTTTAACTTTAACG
AAGATAGATTTGTTATAATGCTGAGCTCTAAAAACCCTATGCCTTTCTGTAAAGAACTTCAAGAAGGGGTTAAAAAGAAA
TTTAATCTTTCCTGCATCATAGGAATAGGTCCAGATTGTAAAGATATAAAAAACTATCATACTTCTTTTACAATTGCAAA
TAAATTAATAGATATTGGGAGAAAGATTGACAAAGATATTTTAGATTTTAAAGATTATAAAATAGAACTATTGATTCACA
GCTTATCCATCAATGATAGCATAATATTCTTTGAAGAGTATAAAGATATTTTAAATTCGAAAAACAAAGATATAATAAAC
ACTATTAAAGTTTATTTTGAAAGCGGAATGAATATAAATCTTGCTTCTAAAAAACTTTTCATTCACAGAAATACTCTTAC
CTATAGATTAAATAAGATAAAAGAAGAATTTAATGTAGATATAACAAATCCCTATGTTTGTATGAAAGTTTATATATCAA
TATTGATTAATCAATTATCCCCTTGA

Upstream 100 bases:

>100_bases
TTTGAACCACAGATTATTGGAGCACTTGGAGCAGCGCTAATTTCACTTGAAGGTAAATGAGGGCATCACTATAGTCAATT
AATTTTTAAGAGGGATGCTT

Downstream 100 bases:

>100_bases
GTGATGAGGGGTTTTATTATTTATGCACAAAAATTATATAGAAATTATAACAAACTATTGTTCTTTTTGAATATTTTAAA
TAAACAAGTTTTATGATAAA

Product: transcriptional regulator CdaR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MLSHEDYQKIVNRLMNILGKNINIMDTKGVIIASGDSTRIGSFHEGAKIAASRKIDVIIDDSNIEYYKGTKKGINIPLFY
NGEVIGVVGITGEPKEIIGFGRIIKELVELMIQEYENKKYEALHSRAMVSFIKEILNHPNIGHEEEKILKSRAKLIGFDI
KKQRSLIVADIRGFNDFILSKNLKEIDIQELKENIVEFIKSKLNHDEIVFNFNEDRFVIMLSSKNPMPFCKELQEGVKKK
FNLSCIIGIGPDCKDIKNYHTSFTIANKLIDIGRKIDKDILDFKDYKIELLIHSLSINDSIIFFEEYKDILNSKNKDIIN
TIKVYFESGMNINLASKKLFIHRNTLTYRLNKIKEEFNVDITNPYVCMKVYISILINQLSP

Sequences:

>Translated_381_residues
MLSHEDYQKIVNRLMNILGKNINIMDTKGVIIASGDSTRIGSFHEGAKIAASRKIDVIIDDSNIEYYKGTKKGINIPLFY
NGEVIGVVGITGEPKEIIGFGRIIKELVELMIQEYENKKYEALHSRAMVSFIKEILNHPNIGHEEEKILKSRAKLIGFDI
KKQRSLIVADIRGFNDFILSKNLKEIDIQELKENIVEFIKSKLNHDEIVFNFNEDRFVIMLSSKNPMPFCKELQEGVKKK
FNLSCIIGIGPDCKDIKNYHTSFTIANKLIDIGRKIDKDILDFKDYKIELLIHSLSINDSIIFFEEYKDILNSKNKDIIN
TIKVYFESGMNINLASKKLFIHRNTLTYRLNKIKEEFNVDITNPYVCMKVYISILINQLSP
>Mature_381_residues
MLSHEDYQKIVNRLMNILGKNINIMDTKGVIIASGDSTRIGSFHEGAKIAASRKIDVIIDDSNIEYYKGTKKGINIPLFY
NGEVIGVVGITGEPKEIIGFGRIIKELVELMIQEYENKKYEALHSRAMVSFIKEILNHPNIGHEEEKILKSRAKLIGFDI
KKQRSLIVADIRGFNDFILSKNLKEIDIQELKENIVEFIKSKLNHDEIVFNFNEDRFVIMLSSKNPMPFCKELQEGVKKK
FNLSCIIGIGPDCKDIKNYHTSFTIANKLIDIGRKIDKDILDFKDYKIELLIHSLSINDSIIFFEEYKDILNSKNKDIIN
TIKVYFESGMNINLASKKLFIHRNTLTYRLNKIKEEFNVDITNPYVCMKVYISILINQLSP

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=386, Percent_Identity=26.1658031088083, Blast_Score=130, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 43892; Mature: 43892

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSHEDYQKIVNRLMNILGKNINIMDTKGVIIASGDSTRIGSFHEGAKIAASRKIDVIID
CCCHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCCCCCCEEECCEEEEEEE
DSNIEYYKGTKKGINIPLFYNGEVIGVVGITGEPKEIIGFGRIIKELVELMIQEYENKKY
CCCCEEEECCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
EALHSRAMVSFIKEILNHPNIGHEEEKILKSRAKLIGFDIKKQRSLIVADIRGFNDFILS
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHCCCEEEEECCCCHHHHHC
KNLKEIDIQELKENIVEFIKSKLNHDEIVFNFNEDRFVIMLSSKNPMPFCKELQEGVKKK
CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHH
FNLSCIIGIGPDCKDIKNYHTSFTIANKLIDIGRKIDKDILDFKDYKIELLIHSLSINDS
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCC
IIFFEEYKDILNSKNKDIINTIKVYFESGMNINLASKKLFIHRNTLTYRLNKIKEEFNVD
EEEHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCEEEEEECHHHHHHHHHHHHHCCC
ITNPYVCMKVYISILINQLSP
CCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLSHEDYQKIVNRLMNILGKNINIMDTKGVIIASGDSTRIGSFHEGAKIAASRKIDVIID
CCCHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCCCCCCEEECCEEEEEEE
DSNIEYYKGTKKGINIPLFYNGEVIGVVGITGEPKEIIGFGRIIKELVELMIQEYENKKY
CCCCEEEECCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
EALHSRAMVSFIKEILNHPNIGHEEEKILKSRAKLIGFDIKKQRSLIVADIRGFNDFILS
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHCCCEEEEECCCCHHHHHC
KNLKEIDIQELKENIVEFIKSKLNHDEIVFNFNEDRFVIMLSSKNPMPFCKELQEGVKKK
CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHH
FNLSCIIGIGPDCKDIKNYHTSFTIANKLIDIGRKIDKDILDFKDYKIELLIHSLSINDS
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCC
IIFFEEYKDILNSKNKDIINTIKVYFESGMNINLASKKLFIHRNTLTYRLNKIKEEFNVD
EEEHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCEEEEEECHHHHHHHHHHHHHCCC
ITNPYVCMKVYISILINQLSP
CCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]