Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 167040523

GI number: 167040523

Start: 1906045

End: 1906653

Strand: Reverse

Name: yggS [C]

Synonym: Teth514_1892

Alternate gene names: 167040523

Gene position: 1906653-1906045 (Counterclockwise)

Preceding gene: 167040524

Following gene: 167040522

Centisome position: 77.59

GC content: 32.68

Gene sequence:

>609_bases
GTGGCAGCTACTAAAACTTTCGGTGTAGAGACTATAAAAGAGGCTATTGCTTGTGGCATAACTGACATAGGTGAGAATAA
GGTTCAAGAGTTAAATGAAAAATATCCTTATTTAAAAAATGAGGTAAAATTTCACTTTATAGGACATTTACAGACAAACA
AAGTGAAATACATTATTGACAAAGTTAAGTTGATACATTCTTTAGATAGTATTAAACTGGCAGAAGAAATAGACAAAAGG
GCTAAACAAAAGAGTCTCATAATAGATTGTTTGGTGGAAATCAATATTGGTGGAGAGGAAAGTAAATACGGAATTCCTCC
TGAAGAAATGCATAATTTTGTTAAAGAAATGGAAAAATATGATAATATAAGAATTAGAGGGCTTATGGCAATAGCTCCTT
ACCTTCCACCAGAAGAGGTAAGGCCCTATTTTAGAAAGATGAAAGAATTATTTGAAGAGCTAAAAGAAATTAAGCAACAT
AATGTACAAGTAGAATTTTTGTCAATGGGTATGTCCAATGACTATTGGGTAGCAGTTGAAGAAGGGGCGAATATTGTTAG
AATTGGCACTTCTATTTTTGGGCAAAGACAATATAATGTGGAGGGATAA

Upstream 100 bases:

>100_bases
GGGGATAAATACGACTATATGTGAAAATATAAGAAAAATAAAGGAAAACATAAAAGAGCATGCGTTAAGGGTAAACAGAA
ATCCAGAGGAAATATTAATT

Downstream 100 bases:

>100_bases
TTAATGTCTTCAAAAATGATTGATAAATTAATGAGTTTCTTTGGTATCGATGAGCCAGAAGAAGAGAAAGAAGAAGTAGA
CTCTTTACAACCTGTCATAC

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MAATKTFGVETIKEAIACGITDIGENKVQELNEKYPYLKNEVKFHFIGHLQTNKVKYIIDKVKLIHSLDSIKLAEEIDKR
AKQKSLIIDCLVEINIGGEESKYGIPPEEMHNFVKEMEKYDNIRIRGLMAIAPYLPPEEVRPYFRKMKELFEELKEIKQH
NVQVEFLSMGMSNDYWVAVEEGANIVRIGTSIFGQRQYNVEG

Sequences:

>Translated_202_residues
MAATKTFGVETIKEAIACGITDIGENKVQELNEKYPYLKNEVKFHFIGHLQTNKVKYIIDKVKLIHSLDSIKLAEEIDKR
AKQKSLIIDCLVEINIGGEESKYGIPPEEMHNFVKEMEKYDNIRIRGLMAIAPYLPPEEVRPYFRKMKELFEELKEIKQH
NVQVEFLSMGMSNDYWVAVEEGANIVRIGTSIFGQRQYNVEG
>Mature_201_residues
AATKTFGVETIKEAIACGITDIGENKVQELNEKYPYLKNEVKFHFIGHLQTNKVKYIIDKVKLIHSLDSIKLAEEIDKRA
KQKSLIIDCLVEINIGGEESKYGIPPEEMHNFVKEMEKYDNIRIRGLMAIAPYLPPEEVRPYFRKMKELFEELKEIKQHN
VQVEFLSMGMSNDYWVAVEEGANIVRIGTSIFGQRQYNVEG

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=212, Percent_Identity=38.2075471698113, Blast_Score=114, Evalue=5e-26,
Organism=Escherichia coli, GI1789321, Length=205, Percent_Identity=34.6341463414634, Blast_Score=117, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI17533025, Length=209, Percent_Identity=29.6650717703349, Blast_Score=87, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6319435, Length=188, Percent_Identity=37.7659574468085, Blast_Score=95, Evalue=8e-21,
Organism=Drosophila melanogaster, GI45550861, Length=216, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 23328; Mature: 23197

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAATKTFGVETIKEAIACGITDIGENKVQELNEKYPYLKNEVKFHFIGHLQTNKVKYIID
CCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEECCHHHHHHH
KVKLIHSLDSIKLAEEIDKRAKQKSLIIDCLVEINIGGEESKYGIPPEEMHNFVKEMEKY
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEHEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
DNIRIRGLMAIAPYLPPEEVRPYFRKMKELFEELKEIKQHNVQVEFLSMGMSNDYWVAVE
CCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEE
EGANIVRIGTSIFGQRQYNVEG
CCCCEEEECHHHHCCCCCCCCC
>Mature Secondary Structure 
AATKTFGVETIKEAIACGITDIGENKVQELNEKYPYLKNEVKFHFIGHLQTNKVKYIID
CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEECCHHHHHHH
KVKLIHSLDSIKLAEEIDKRAKQKSLIIDCLVEINIGGEESKYGIPPEEMHNFVKEMEKY
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEHEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
DNIRIRGLMAIAPYLPPEEVRPYFRKMKELFEELKEIKQHNVQVEFLSMGMSNDYWVAVE
CCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEE
EGANIVRIGTSIFGQRQYNVEG
CCCCEEEECHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]