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The map label for this gene is ylmH [H]

Identifier: 167040520

GI number: 167040520

Start: 1904566

End: 1905312

Strand: Reverse

Name: ylmH [H]

Synonym: Teth514_1889

Alternate gene names: 167040520

Gene position: 1905312-1904566 (Counterclockwise)

Preceding gene: 167040521

Following gene: 167040519

Centisome position: 77.54

GC content: 33.33

Gene sequence:

>747_bases
ATGATGGACAAGGAATTTACTGTATCCCGATTTGAAGACATAATTAAAGGCGTTTTAAAATCTAAAAGAGTAAAATATAC
AGACTTTTTAAGCCTCTCTGAACAAAAAATTTTTGAAAAAACTATATTAAAGTATCGACAGCAAGATATAAACTATAATC
TAGATGGAGGATATCCTTTAGCAGAAAGAAAGATAGCAATTATTTACCCCGATTTTTTACAGCCGGAAGATACCCCTATT
TGCGCTGTAAGAATTGAAGGCAATTTTTCTAAGCTATCTCATAGAGATGTGTTGGGTTCACTTTTAGGGTTAGGGATAAA
AAGACAAAAAATAGGCGATATAATTGTAAAAGAGGATAAATGTGACATATTGTTACATAAAGATGTGGAAAGTTATGTAC
TTATGAACCTTTTTAAAGTCGGGAAAGAGAAGGTAAGAGTTAATTCAATTGACTTGAAAGATGTGATAGAACCTGAAATA
AAATATAAGGACATTTTTTCTACCGTAGCCTCACTACGGGTTGACAGTGTGGCAGCTGCAGGTTTTGGTATATCAAGGAC
GAAGGCTTCAGAACTTATAAAGTCCGGTCTTCTTCAAATAAATTGGGAGTATACAGAAGACCCTTCTTCAGAAGTAAAAG
AGGGAGATGTAATTTCTTTACGTGGTTTTGGAAGAATTAGATTAGAAGAAGTGAGAGGTAATACAAAAAAAGGTCGCGTT
TCTGTACATATTCTAAGGTTTATATAA

Upstream 100 bases:

>100_bases
ATTTAATGATAGATTTTTCGCCAGTTTTGGCGATTTTGGTGATTCAGTATTTAGTTCGTCCTTTAGTTTTTAAATTAGTA
TTATTACTGATGAGGTATAT

Downstream 100 bases:

>100_bases
TGTTACAAAAGAAAAGGAGGTAATATTATGCTGACGCCTATGGATATACATAATAAAGAATTTAAGCGGTCTTTTAGGGG
TTATAATGAAGAGGAAGTGG

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MMDKEFTVSRFEDIIKGVLKSKRVKYTDFLSLSEQKIFEKTILKYRQQDINYNLDGGYPLAERKIAIIYPDFLQPEDTPI
CAVRIEGNFSKLSHRDVLGSLLGLGIKRQKIGDIIVKEDKCDILLHKDVESYVLMNLFKVGKEKVRVNSIDLKDVIEPEI
KYKDIFSTVASLRVDSVAAAGFGISRTKASELIKSGLLQINWEYTEDPSSEVKEGDVISLRGFGRIRLEEVRGNTKKGRV
SVHILRFI

Sequences:

>Translated_248_residues
MMDKEFTVSRFEDIIKGVLKSKRVKYTDFLSLSEQKIFEKTILKYRQQDINYNLDGGYPLAERKIAIIYPDFLQPEDTPI
CAVRIEGNFSKLSHRDVLGSLLGLGIKRQKIGDIIVKEDKCDILLHKDVESYVLMNLFKVGKEKVRVNSIDLKDVIEPEI
KYKDIFSTVASLRVDSVAAAGFGISRTKASELIKSGLLQINWEYTEDPSSEVKEGDVISLRGFGRIRLEEVRGNTKKGRV
SVHILRFI
>Mature_248_residues
MMDKEFTVSRFEDIIKGVLKSKRVKYTDFLSLSEQKIFEKTILKYRQQDINYNLDGGYPLAERKIAIIYPDFLQPEDTPI
CAVRIEGNFSKLSHRDVLGSLLGLGIKRQKIGDIIVKEDKCDILLHKDVESYVLMNLFKVGKEKVRVNSIDLKDVIEPEI
KYKDIFSTVASLRVDSVAAAGFGISRTKASELIKSGLLQINWEYTEDPSSEVKEGDVISLRGFGRIRLEEVRGNTKKGRV
SVHILRFI

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 28289; Mature: 28289

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDKEFTVSRFEDIIKGVLKSKRVKYTDFLSLSEQKIFEKTILKYRQQDINYNLDGGYPL
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
AERKIAIIYPDFLQPEDTPICAVRIEGNFSKLSHRDVLGSLLGLGIKRQKIGDIIVKEDK
CCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHCCEEEECCC
CDILLHKDVESYVLMNLFKVGKEKVRVNSIDLKDVIEPEIKYKDIFSTVASLRVDSVAAA
CCEEEECCHHHHHHHHHHHHCHHHEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
GFGISRTKASELIKSGLLQINWEYTEDPSSEVKEGDVISLRGFGRIRLEEVRGNTKKGRV
CCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCEE
SVHILRFI
EEEEEEEC
>Mature Secondary Structure
MMDKEFTVSRFEDIIKGVLKSKRVKYTDFLSLSEQKIFEKTILKYRQQDINYNLDGGYPL
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
AERKIAIIYPDFLQPEDTPICAVRIEGNFSKLSHRDVLGSLLGLGIKRQKIGDIIVKEDK
CCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHCCEEEECCC
CDILLHKDVESYVLMNLFKVGKEKVRVNSIDLKDVIEPEIKYKDIFSTVASLRVDSVAAA
CCEEEECCHHHHHHHHHHHHCHHHEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
GFGISRTKASELIKSGLLQINWEYTEDPSSEVKEGDVISLRGFGRIRLEEVRGNTKKGRV
CCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCEE
SVHILRFI
EEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]