Click here to switch to the map view.

The map label for this gene is rnjA [H]

Identifier: 167040132

GI number: 167040132

Start: 1526165

End: 1527847

Strand: Direct

Name: rnjA [H]

Synonym: Teth514_1494

Alternate gene names: 167040132

Gene position: 1526165-1527847 (Clockwise)

Preceding gene: 167040131

Following gene: 167040133

Centisome position: 62.11

GC content: 37.08

Gene sequence:

>1683_bases
ATGAAAGGAGATAAGTATTTGGCACACAAGGCAAAACTCAAAATAATACCGTTGGGCGGGTTAAATGAGATCGGCAAAAA
CATGACGGTTTTTGAATTCGGAAATGACATTATAGTTGTGGATTGCGGTCTCGCTTTTCCAGATGATGAAATGTTGGGAA
TAGACCTTGTCATTCCCGACATTACTTATTTATTGAAAAATCGGGAAAAAGTGAGAGCAATTGTTTTAACTCATGGTCAC
GAAGACCATATTGGGGCATTACCCTATATTTTAAAACAACTTAATGTTCCTGTGTATGGGACTCGTTTGACTATTGGTTT
AGTAGAATATAAGTTAAAAGAGCAGGGTATTTTAAAAGATAGTAAATTGATAACTGTGAAGCCAAGAGAGATTGTCGAAA
TTGGTCAGTTTAAAGTGGAGTTTCTAAGGACCTCTCATAGCATTGCAGATTCTGCTGCTCTGGCGATTCACACTCCTGTA
GGGACTGTATTTCATTCGGGAGACTTTAAAATAGATTTTACTCCTATAGGAGGAGAAATTGCAGACTTACACCGCTTTGC
CCAGTTAGGGGAAAAAGGGGTACTTGTGATGTTGTGCGATAGTACCAATATTGAAAGACCTGGTTATACCATGTCAGAAA
GGACAGTAGGAGAGACTTTTGACAATCTATTCAGAAAAGCGGAACAGCGAATTATAGTTACGACTTTTGCTTCTAATATC
CACAGAGTGCAACAAATTATAGATTCTGCTCACAAGTATGGAAGAAAGGTTGCTATTTCAGGCAGAAGCATGTTAAATGT
AGTTAATGTAGCGATGGAATTAGGCTATTTAATTGTTCCTGATGGCCTTTTGATTGATATTGATGAAGCCAATAAATTGC
CCCATGATAAAGTTGCCATTATAACGACAGGCAGCCAAGGGGAACCTATGTCAGCTCTTACCAGAATGGCTTCTTCTGAG
CATAAAAAAGTAGAGATTGTACCGGGAGATACAGTGATAATTTCTGCTTCTGCTATTCCGGGAAATGAAAAACTTATTTC
TCGCGTTATCAACCAATTATTTAAAAAGGGTGCCAATGTAATTTATGAAGCATTGGCAGATATTCACGTATCGGGTCACG
CTTGTCAAGAAGAGATTAAGCTACTTCATACATTAATAAAACCTAAATTTTTCATTCCTGTTCATGGGGAATACAGACAT
TTAGTTCAGCATGCTAAACTTGCAGAGACTTTGGGAATGCCTCCCCAAAATATCTTTATAGTAGATAACGGGACAGTGTT
AGAGTTTACAAAAAATTCTGGAAGAATTGCAGGAACAGTAACAGCAGGGAAAGTGTTAGTAGATGGCTTGGGTGTTGGAG
ACGTAGGAAATATTGTTTTAAGAGATAGAAAACATTTGGCTCAAGATGGTTTGTTAGTAGTAGTGGTTACTATTTCTAAA
GAGACTGGAGGAATTATAGCGGGTCCCGACATAATTTCCAGAGGATTTGTATATGTGAGAGAATCAGAGGATTTAATGGA
GGAATCCAAAAATGTTGTCAGAGATGTGTTATCAAAGTGTAAGAAAGAGGGAATTAGCGAATGGGCTACTATAAAATCAA
TGATAAAAGATGATTTAAGCAGTTTCTTATATGAAAAAACTAAGAGAAATCCTATGATATTGCCAATCATAATGGAAATT
TAA

Upstream 100 bases:

>100_bases
GTATTTTTTTAAATAAAGTATAATTTATATTAACTGGTGTAAGGTACGGGTAAGTGTTTTTGGTTTTTTGGAAAAATAAA
ATTAAAGCTAAAAATTTCTA

Downstream 100 bases:

>100_bases
CCAGGAGGAGCTTAAATATGAACGTCTACGACAAAGCTTATGAACTGGCTAATGCTATAAGACAGTTGCCAGAATACAAA
GCTTTTAAAGGGGCGTATCA

Product: beta-lactamase domain-containing protein

Products: NA

Alternate protein names: RNase J1 [H]

Number of amino acids: Translated: 560; Mature: 560

Protein sequence:

>560_residues
MKGDKYLAHKAKLKIIPLGGLNEIGKNMTVFEFGNDIIVVDCGLAFPDDEMLGIDLVIPDITYLLKNREKVRAIVLTHGH
EDHIGALPYILKQLNVPVYGTRLTIGLVEYKLKEQGILKDSKLITVKPREIVEIGQFKVEFLRTSHSIADSAALAIHTPV
GTVFHSGDFKIDFTPIGGEIADLHRFAQLGEKGVLVMLCDSTNIERPGYTMSERTVGETFDNLFRKAEQRIIVTTFASNI
HRVQQIIDSAHKYGRKVAISGRSMLNVVNVAMELGYLIVPDGLLIDIDEANKLPHDKVAIITTGSQGEPMSALTRMASSE
HKKVEIVPGDTVIISASAIPGNEKLISRVINQLFKKGANVIYEALADIHVSGHACQEEIKLLHTLIKPKFFIPVHGEYRH
LVQHAKLAETLGMPPQNIFIVDNGTVLEFTKNSGRIAGTVTAGKVLVDGLGVGDVGNIVLRDRKHLAQDGLLVVVVTISK
ETGGIIAGPDIISRGFVYVRESEDLMEESKNVVRDVLSKCKKEGISEWATIKSMIKDDLSSFLYEKTKRNPMILPIIMEI

Sequences:

>Translated_560_residues
MKGDKYLAHKAKLKIIPLGGLNEIGKNMTVFEFGNDIIVVDCGLAFPDDEMLGIDLVIPDITYLLKNREKVRAIVLTHGH
EDHIGALPYILKQLNVPVYGTRLTIGLVEYKLKEQGILKDSKLITVKPREIVEIGQFKVEFLRTSHSIADSAALAIHTPV
GTVFHSGDFKIDFTPIGGEIADLHRFAQLGEKGVLVMLCDSTNIERPGYTMSERTVGETFDNLFRKAEQRIIVTTFASNI
HRVQQIIDSAHKYGRKVAISGRSMLNVVNVAMELGYLIVPDGLLIDIDEANKLPHDKVAIITTGSQGEPMSALTRMASSE
HKKVEIVPGDTVIISASAIPGNEKLISRVINQLFKKGANVIYEALADIHVSGHACQEEIKLLHTLIKPKFFIPVHGEYRH
LVQHAKLAETLGMPPQNIFIVDNGTVLEFTKNSGRIAGTVTAGKVLVDGLGVGDVGNIVLRDRKHLAQDGLLVVVVTISK
ETGGIIAGPDIISRGFVYVRESEDLMEESKNVVRDVLSKCKKEGISEWATIKSMIKDDLSSFLYEKTKRNPMILPIIMEI
>Mature_560_residues
MKGDKYLAHKAKLKIIPLGGLNEIGKNMTVFEFGNDIIVVDCGLAFPDDEMLGIDLVIPDITYLLKNREKVRAIVLTHGH
EDHIGALPYILKQLNVPVYGTRLTIGLVEYKLKEQGILKDSKLITVKPREIVEIGQFKVEFLRTSHSIADSAALAIHTPV
GTVFHSGDFKIDFTPIGGEIADLHRFAQLGEKGVLVMLCDSTNIERPGYTMSERTVGETFDNLFRKAEQRIIVTTFASNI
HRVQQIIDSAHKYGRKVAISGRSMLNVVNVAMELGYLIVPDGLLIDIDEANKLPHDKVAIITTGSQGEPMSALTRMASSE
HKKVEIVPGDTVIISASAIPGNEKLISRVINQLFKKGANVIYEALADIHVSGHACQEEIKLLHTLIKPKFFIPVHGEYRH
LVQHAKLAETLGMPPQNIFIVDNGTVLEFTKNSGRIAGTVTAGKVLVDGLGVGDVGNIVLRDRKHLAQDGLLVVVVTISK
ETGGIIAGPDIISRGFVYVRESEDLMEESKNVVRDVLSKCKKEGISEWATIKSMIKDDLSSFLYEKTKRNPMILPIIMEI

Specific function: Cleaves the 5'-leader sequence of certain mRNAs. May play a role in maturation and stability of specific mRNAs. Is also required for the maturation of the 16S rRNA. Acts preferentially on 16S rRNA precursors after association of the 30S and 50S ribosomal

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 61695; Mature: 61695

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGDKYLAHKAKLKIIPLGGLNEIGKNMTVFEFGNDIIVVDCGLAFPDDEMLGIDLVIPD
CCCCCEEEEECEEEEEECCCHHHHCCCCEEEEECCCEEEEECCCCCCCCCEEEEEEEHHH
ITYLLKNREKVRAIVLTHGHEDHIGALPYILKQLNVPVYGTRLTIGLVEYKLKEQGILKD
HHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEEEEEEEHHHHHHCCCCCC
SKLITVKPREIVEIGQFKVEFLRTSHSIADSAALAIHTPVGTVFHSGDFKIDFTPIGGEI
CCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCEEEEEEECCCHH
ADLHRFAQLGEKGVLVMLCDSTNIERPGYTMSERTVGETFDNLFRKAEQRIIVTTFASNI
HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEEEHHHHHH
HRVQQIIDSAHKYGRKVAISGRSMLNVVNVAMELGYLIVPDGLLIDIDEANKLPHDKVAI
HHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCEEEECCCEEEEECCCCCCCCCCEEE
ITTGSQGEPMSALTRMASSEHKKVEIVPGDTVIISASAIPGNEKLISRVINQLFKKGANV
EEECCCCCCHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
IYEALADIHVSGHACQEEIKLLHTLIKPKFFIPVHGEYRHLVQHAKLAETLGMPPQNIFI
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEE
VDNGTVLEFTKNSGRIAGTVTAGKVLVDGLGVGDVGNIVLRDRKHLAQDGLLVVVVTISK
EECCEEEEEECCCCEEEEEEEECEEEEECCCCCCCCCCEECCCHHHCCCCEEEEEEEEEC
ETGGIIAGPDIISRGFVYVRESEDLMEESKNVVRDVLSKCKKEGISEWATIKSMIKDDLS
CCCCEEECCHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
SFLYEKTKRNPMILPIIMEI
HHHHHHHCCCCEEEEEEEEC
>Mature Secondary Structure
MKGDKYLAHKAKLKIIPLGGLNEIGKNMTVFEFGNDIIVVDCGLAFPDDEMLGIDLVIPD
CCCCCEEEEECEEEEEECCCHHHHCCCCEEEEECCCEEEEECCCCCCCCCEEEEEEEHHH
ITYLLKNREKVRAIVLTHGHEDHIGALPYILKQLNVPVYGTRLTIGLVEYKLKEQGILKD
HHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEEEEEEEHHHHHHCCCCCC
SKLITVKPREIVEIGQFKVEFLRTSHSIADSAALAIHTPVGTVFHSGDFKIDFTPIGGEI
CCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCEEEEEEECCCHH
ADLHRFAQLGEKGVLVMLCDSTNIERPGYTMSERTVGETFDNLFRKAEQRIIVTTFASNI
HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEEEHHHHHH
HRVQQIIDSAHKYGRKVAISGRSMLNVVNVAMELGYLIVPDGLLIDIDEANKLPHDKVAI
HHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCEEEECCCEEEEECCCCCCCCCCEEE
ITTGSQGEPMSALTRMASSEHKKVEIVPGDTVIISASAIPGNEKLISRVINQLFKKGANV
EEECCCCCCHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
IYEALADIHVSGHACQEEIKLLHTLIKPKFFIPVHGEYRHLVQHAKLAETLGMPPQNIFI
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEE
VDNGTVLEFTKNSGRIAGTVTAGKVLVDGLGVGDVGNIVLRDRKHLAQDGLLVVVVTISK
EECCEEEEEECCCCEEEEEEEECEEEEECCCCCCCCCCEECCCHHHCCCCEEEEEEEEEC
ETGGIIAGPDIISRGFVYVRESEDLMEESKNVVRDVLSKCKKEGISEWATIKSMIKDDLS
CCCCEEECCHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
SFLYEKTKRNPMILPIIMEI
HHHHHHHCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969500; 9384377 [H]