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The map label for this gene is ybbD [H]

Identifier: 167038852

GI number: 167038852

Start: 184152

End: 185714

Strand: Direct

Name: ybbD [H]

Synonym: Teth514_0182

Alternate gene names: 167038852

Gene position: 184152-185714 (Clockwise)

Preceding gene: 167038851

Following gene: 167038853

Centisome position: 7.49

GC content: 33.46

Gene sequence:

>1563_bases
ATGACACTGGAAGAAAAGATAGGGCAAATGCTGATGGTTGGCTTTCCGTCGCCCACCTATGATGACCATGTTGAGAAGTT
AGTTAGTGAATATAAAATTGGTAACATAATTTTATTTTCTAGAAATGTAAAGGGAAAAGAACAGCTTCAAAATTTATGCA
ATAATATCCAGATGAACATAATAAAACATACAGGCATTCCAGCGTTAGTTGCTATTGACCAGGAGGGAGGAATGGTTACA
AGAATTTATAAAGATGCCACTTATTTACCAGGCAATATGGCAATAGCAGCGACAAATGAAGTAGAAAATGCATATAAGAT
AGGAGAAATAGCAGGTAAAGAGCTTAGAGCATTGGGCATAAATATTAATTTTGCTCCTGTCCTTGATATTAATAATAATC
TATCTAATCCTGTAATAGGGGTTAGGTCTTATGGAGAAAATCCAGAAAAAGTAGCGGAGTTCGGAATTAATTATATAAAA
GGTTTACAAAAAGAAAATGTTATAGCGACAGCGAAGCATTTTCCCGGTCATGGGGATACTTCAGTAGATTCTCATCTTGA
TTTACCATTGGTGTCTTACAATAAAGAGCGATTATATAGAATTGAGTTATATCCTTTTAAAAAAGCAATAGAAAATGGTG
TGGAAGCCATAATGACAGCCCATATTCTCTTTTCAGCTCTTGAGGAAAATAAATTGCCTGCAACATTGTCCCATAATATT
CTCACCAATATACTGAGAAAGGAACTTAGATTTAATGGATTAATTATAACTGATTGTATGGAAATGAATGCAATTGCAAA
ATATTTTGGTACGGCCAAAGCAGCTGCGATGGCCATAAAAGCAGGAGCAGATATAGTCCTTGTTTCCCATACGAAAAAAC
TGCAGATAGAGGCATTTAATGAAATCAAAGAGGCAGTTTTACGAGGTGAAATATCAATTGAAAGAATAGATGAATCTGTT
GAAAGAATAATCCAATTAAAAGAGAAATACAAACTTTTTGAAAATCCATATCCAGATGAAAATAAAATTAAAACTATTGT
GGGGTGTAAAGAACATCAAGAAATTGCAAAAAACATAAGTTTGAATAGCATCACTATTGTTAAAGACGAAAATAACCTTT
TACCAATAAGGAAACAAAAAATATTGGCAGTTTCTCCTGAAACAGTCCCAATTTCAGGTGTGGATGATACTTTAATGGAT
AAAGTATCTTTTGCAAAAGCTTTTGTGCAAAAATTTGGAGGGGTTGAAAAAACTATTCCTGTAAATCCTGATGAAGACCT
CATAAATACTATCAGAGAAGAGGCTAAAGATAAAGAAATTGTTGTAGTAGGCGCTTATAATGCTAGTTTGAATGAAGGCC
AAGTAAGGCTTGTAAACTCATTGCTGGAAGTGAATAAAAATATCATCGTTGTTGCCTTAAGAAATCCATATGATTTATTA
GAATTTGAAGATGTGCCTACATATGTTTGTACTTATGAATATACTCCACTTTCTGTAGAAAGTGTGCTAGAGGTTTTAAG
TGGTAATTATGTGCCAAAAGGAGAATTGCCGGTTTCTTTATAA

Upstream 100 bases:

>100_bases
TTAATTATGTAAAGCATAAAATAGAATTGGTGCGTAAAGAAAATGAAAGTCCTTTTAAAAATATCATCTGAAAGGATTGA
AGATTATGGGGATTAAGGAT

Downstream 100 bases:

>100_bases
ACCAAATAATTAAAATAAAATAGTAAAAAAGGGGAGTTGACATGGATATTCAATATATTAATTTGACAGAGGGAAGGGTA
GAAGAAATATTGTTTCTTTG

Product: glycoside hydrolase family 3 protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MTLEEKIGQMLMVGFPSPTYDDHVEKLVSEYKIGNIILFSRNVKGKEQLQNLCNNIQMNIIKHTGIPALVAIDQEGGMVT
RIYKDATYLPGNMAIAATNEVENAYKIGEIAGKELRALGININFAPVLDINNNLSNPVIGVRSYGENPEKVAEFGINYIK
GLQKENVIATAKHFPGHGDTSVDSHLDLPLVSYNKERLYRIELYPFKKAIENGVEAIMTAHILFSALEENKLPATLSHNI
LTNILRKELRFNGLIITDCMEMNAIAKYFGTAKAAAMAIKAGADIVLVSHTKKLQIEAFNEIKEAVLRGEISIERIDESV
ERIIQLKEKYKLFENPYPDENKIKTIVGCKEHQEIAKNISLNSITIVKDENNLLPIRKQKILAVSPETVPISGVDDTLMD
KVSFAKAFVQKFGGVEKTIPVNPDEDLINTIREEAKDKEIVVVGAYNASLNEGQVRLVNSLLEVNKNIIVVALRNPYDLL
EFEDVPTYVCTYEYTPLSVESVLEVLSGNYVPKGELPVSL

Sequences:

>Translated_520_residues
MTLEEKIGQMLMVGFPSPTYDDHVEKLVSEYKIGNIILFSRNVKGKEQLQNLCNNIQMNIIKHTGIPALVAIDQEGGMVT
RIYKDATYLPGNMAIAATNEVENAYKIGEIAGKELRALGININFAPVLDINNNLSNPVIGVRSYGENPEKVAEFGINYIK
GLQKENVIATAKHFPGHGDTSVDSHLDLPLVSYNKERLYRIELYPFKKAIENGVEAIMTAHILFSALEENKLPATLSHNI
LTNILRKELRFNGLIITDCMEMNAIAKYFGTAKAAAMAIKAGADIVLVSHTKKLQIEAFNEIKEAVLRGEISIERIDESV
ERIIQLKEKYKLFENPYPDENKIKTIVGCKEHQEIAKNISLNSITIVKDENNLLPIRKQKILAVSPETVPISGVDDTLMD
KVSFAKAFVQKFGGVEKTIPVNPDEDLINTIREEAKDKEIVVVGAYNASLNEGQVRLVNSLLEVNKNIIVVALRNPYDLL
EFEDVPTYVCTYEYTPLSVESVLEVLSGNYVPKGELPVSL
>Mature_519_residues
TLEEKIGQMLMVGFPSPTYDDHVEKLVSEYKIGNIILFSRNVKGKEQLQNLCNNIQMNIIKHTGIPALVAIDQEGGMVTR
IYKDATYLPGNMAIAATNEVENAYKIGEIAGKELRALGININFAPVLDINNNLSNPVIGVRSYGENPEKVAEFGINYIKG
LQKENVIATAKHFPGHGDTSVDSHLDLPLVSYNKERLYRIELYPFKKAIENGVEAIMTAHILFSALEENKLPATLSHNIL
TNILRKELRFNGLIITDCMEMNAIAKYFGTAKAAAMAIKAGADIVLVSHTKKLQIEAFNEIKEAVLRGEISIERIDESVE
RIIQLKEKYKLFENPYPDENKIKTIVGCKEHQEIAKNISLNSITIVKDENNLLPIRKQKILAVSPETVPISGVDDTLMDK
VSFAKAFVQKFGGVEKTIPVNPDEDLINTIREEAKDKEIVVVGAYNASLNEGQVRLVNSLLEVNKNIIVVALRNPYDLLE
FEDVPTYVCTYEYTPLSVESVLEVLSGNYVPKGELPVSL

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=318, Percent_Identity=31.4465408805031, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1788453, Length=588, Percent_Identity=21.2585034013605, Blast_Score=113, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 57898; Mature: 57766

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLEEKIGQMLMVGFPSPTYDDHVEKLVSEYKIGNIILFSRNVKGKEQLQNLCNNIQMNI
CCCHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHEEEE
IKHTGIPALVAIDQEGGMVTRIYKDATYLPGNMAIAATNEVENAYKIGEIAGKELRALGI
EEECCCCEEEEEECCCCEEEEEECCCEECCCCEEEEECCCHHHHHHHHHHCCCEEEEEEE
NINFAPVLDINNNLSNPVIGVRSYGENPEKVAEFGINYIKGLQKENVIATAKHFPGHGDT
EEEEEEEEECCCCCCCCEEEECCCCCCHHHHHHHCHHHHHCCCCCCEEEEECCCCCCCCC
SVDSHLDLPLVSYNKERLYRIELYPFKKAIENGVEAIMTAHILFSALEENKLPATLSHNI
CCCCCCCCCEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LTNILRKELRFNGLIITDCMEMNAIAKYFGTAKAAAMAIKAGADIVLVSHTKKLQIEAFN
HHHHHHHHHHHCCEEEEHHHHHHHHHHHHCCHHHHHHHEECCCCEEEEECCCEEEHHHHH
EIKEAVLRGEISIERIDESVERIIQLKEKYKLFENPYPDENKIKTIVGCKEHQEIAKNIS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHCCC
LNSITIVKDENNLLPIRKQKILAVSPETVPISGVDDTLMDKVSFAKAFVQKFGGVEKTIP
CCEEEEEECCCCCCCCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
VNPDEDLINTIREEAKDKEIVVVGAYNASLNEGQVRLVNSLLEVNKNIIVVALRNPYDLL
CCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCC
EFEDVPTYVCTYEYTPLSVESVLEVLSGNYVPKGELPVSL
EECCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLEEKIGQMLMVGFPSPTYDDHVEKLVSEYKIGNIILFSRNVKGKEQLQNLCNNIQMNI
CCHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHEEEE
IKHTGIPALVAIDQEGGMVTRIYKDATYLPGNMAIAATNEVENAYKIGEIAGKELRALGI
EEECCCCEEEEEECCCCEEEEEECCCEECCCCEEEEECCCHHHHHHHHHHCCCEEEEEEE
NINFAPVLDINNNLSNPVIGVRSYGENPEKVAEFGINYIKGLQKENVIATAKHFPGHGDT
EEEEEEEEECCCCCCCCEEEECCCCCCHHHHHHHCHHHHHCCCCCCEEEEECCCCCCCCC
SVDSHLDLPLVSYNKERLYRIELYPFKKAIENGVEAIMTAHILFSALEENKLPATLSHNI
CCCCCCCCCEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LTNILRKELRFNGLIITDCMEMNAIAKYFGTAKAAAMAIKAGADIVLVSHTKKLQIEAFN
HHHHHHHHHHHCCEEEEHHHHHHHHHHHHCCHHHHHHHEECCCCEEEEECCCEEEHHHHH
EIKEAVLRGEISIERIDESVERIIQLKEKYKLFENPYPDENKIKTIVGCKEHQEIAKNIS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHCCC
LNSITIVKDENNLLPIRKQKILAVSPETVPISGVDDTLMDKVSFAKAFVQKFGGVEKTIP
CCEEEEEECCCCCCCCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
VNPDEDLINTIREEAKDKEIVVVGAYNASLNEGQVRLVNSLLEVNKNIIVVALRNPYDLL
CCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCC
EFEDVPTYVCTYEYTPLSVESVLEVLSGNYVPKGELPVSL
EECCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]