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The map label for this gene is ylmD [H]

Identifier: 167038790

GI number: 167038790

Start: 112995

End: 113807

Strand: Direct

Name: ylmD [H]

Synonym: Teth514_0117

Alternate gene names: 167038790

Gene position: 112995-113807 (Clockwise)

Preceding gene: 167038789

Following gene: 167038791

Centisome position: 4.6

GC content: 36.16

Gene sequence:

>813_bases
TTGGAAATAGGTTTTAAAAGAAATGAAGTAAAAGGAGTAGTTTTTTATACAATACCATCTTTTGAAAAGACAGGACTTGT
CAAACACCTTTTTACTACTAGAATTGGCGGTGTAAGTAAAGGCAAATATGCTTCCTTGAATTTAAGCTTAAAAAGATATG
ATACTAAAGAGGAAGTCTATGAAAATTTTAAAATAATATGCGATATTGGCGGTTTTTCCTACGAAGATATGGTTTTTTCA
GACCAGGTTCATGGTGATGTTATAAGAAAAGTGACTCTAAAGGATAAAGGAAAAAACTTTGGAGGAAGCGATATTTCTGG
CGTAGATGCCCTTATGACTAATGAAAGAGGTATTCTGCTTGTTACATTTTATGCCGACTGTGTGCCTTTGTTTTTCTTAG
ACCCTGTCAAAAAAGTTATTGCCCTTGCACACGCAGGATGGAGAGGCACAGTAGCCTACATTGGGCCTAAAACAGTTAAT
GCCATGAAAGAAGAATACGGCTCAAATCCAAAAGATATACTTGTAGGGATAGGCCCTTCTATATACAAATGCTGCTATGA
AGTAGGTGATGATGTTGCGAATAAAATTAAAGATGTTATTGATGAATGGGAAAAAGTTCTTGTGAAAAAGGCGGGGGGCA
AATGGATGCTGGATTTACAGCTTACCAACTACATTGAACTTATAAATACTGGCATACCAGATGAAAACATTACAGTAACC
CAAATGTGCACCCATTGCAATAGTGAATTTTATTCCTATAGAAGAGACAAAGGCATGACAGGCAGTATGGCAGCTTTTAT
GGAACTTAAGTAG

Upstream 100 bases:

>100_bases
TTTTGTGCAATGGACAAATAAACTTTTCGGAATTGAAGAAAATAAAAAAGAAAAAGAGAAAAGGAAAGATAAGTTACACA
GTTGATAAAGGAGTGATACT

Downstream 100 bases:

>100_bases
TTTTTCTTTTATGATATTTGTTCTAATATATAAGTTAAAGAAATGGTTATTTATGTTTTTTGCATATTGACTATTTCTAT
ATTGGATAATATAATCAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MEIGFKRNEVKGVVFYTIPSFEKTGLVKHLFTTRIGGVSKGKYASLNLSLKRYDTKEEVYENFKIICDIGGFSYEDMVFS
DQVHGDVIRKVTLKDKGKNFGGSDISGVDALMTNERGILLVTFYADCVPLFFLDPVKKVIALAHAGWRGTVAYIGPKTVN
AMKEEYGSNPKDILVGIGPSIYKCCYEVGDDVANKIKDVIDEWEKVLVKKAGGKWMLDLQLTNYIELINTGIPDENITVT
QMCTHCNSEFYSYRRDKGMTGSMAAFMELK

Sequences:

>Translated_270_residues
MEIGFKRNEVKGVVFYTIPSFEKTGLVKHLFTTRIGGVSKGKYASLNLSLKRYDTKEEVYENFKIICDIGGFSYEDMVFS
DQVHGDVIRKVTLKDKGKNFGGSDISGVDALMTNERGILLVTFYADCVPLFFLDPVKKVIALAHAGWRGTVAYIGPKTVN
AMKEEYGSNPKDILVGIGPSIYKCCYEVGDDVANKIKDVIDEWEKVLVKKAGGKWMLDLQLTNYIELINTGIPDENITVT
QMCTHCNSEFYSYRRDKGMTGSMAAFMELK
>Mature_270_residues
MEIGFKRNEVKGVVFYTIPSFEKTGLVKHLFTTRIGGVSKGKYASLNLSLKRYDTKEEVYENFKIICDIGGFSYEDMVFS
DQVHGDVIRKVTLKDKGKNFGGSDISGVDALMTNERGILLVTFYADCVPLFFLDPVKKVIALAHAGWRGTVAYIGPKTVN
AMKEEYGSNPKDILVGIGPSIYKCCYEVGDDVANKIKDVIDEWEKVLVKKAGGKWMLDLQLTNYIELINTGIPDENITVT
QMCTHCNSEFYSYRRDKGMTGSMAAFMELK

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=250, Percent_Identity=31.6, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI190194372, Length=250, Percent_Identity=31.6, Blast_Score=119, Evalue=4e-27,
Organism=Escherichia coli, GI1788945, Length=253, Percent_Identity=33.201581027668, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 30248; Mature: 30248

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIGFKRNEVKGVVFYTIPSFEKTGLVKHLFTTRIGGVSKGKYASLNLSLKRYDTKEEVY
CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCHHHHH
ENFKIICDIGGFSYEDMVFSDQVHGDVIRKVTLKDKGKNFGGSDISGVDALMTNERGILL
CCEEEEEEECCCCCCCEEECCHHHHHHHEEEEECCCCCCCCCCCCCCHHHHEECCCCEEE
VTFYADCVPLFFLDPVKKVIALAHAGWRGTVAYIGPKTVNAMKEEYGSNPKDILVGIGPS
EEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCEEEECCHH
IYKCCYEVGDDVANKIKDVIDEWEKVLVKKAGGKWMLDLQLTNYIELINTGIPDENITVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCCCCHHH
QMCTHCNSEFYSYRRDKGMTGSMAAFMELK
HHHHHHCHHHHHHHHCCCCCCCHHEEEECC
>Mature Secondary Structure
MEIGFKRNEVKGVVFYTIPSFEKTGLVKHLFTTRIGGVSKGKYASLNLSLKRYDTKEEVY
CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCHHHHH
ENFKIICDIGGFSYEDMVFSDQVHGDVIRKVTLKDKGKNFGGSDISGVDALMTNERGILL
CCEEEEEEECCCCCCCEEECCHHHHHHHEEEEECCCCCCCCCCCCCCHHHHEECCCCEEE
VTFYADCVPLFFLDPVKKVIALAHAGWRGTVAYIGPKTVNAMKEEYGSNPKDILVGIGPS
EEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCEEEECCHH
IYKCCYEVGDDVANKIKDVIDEWEKVLVKKAGGKWMLDLQLTNYIELINTGIPDENITVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCCCCHHH
QMCTHCNSEFYSYRRDKGMTGSMAAFMELK
HHHHHHCHHHHHHHHCCCCCCCHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]