Click here to switch to the map view.

The map label for this gene is ligA

Identifier: 165933668

GI number:

Start: 1027916

End: 1029985

Strand: Reverse

Name: ligA

Synonym: RrIowa_1307

Alternate gene names: NA

Gene position: NA

Preceding gene: 165933669

Following gene: 165933666

Centisome position: NA

GC content: NA

Gene sequence:

>2070_bases
ATGCAAAATATTGATTTAATATCTGAAGAGGAAGCACAAAAATTACTAGAAGAACTCGCTGATAAAATTGCAGCGTATAA
CCATGCTTATTATATAGAAGATAATCCTTTAGTTTCTGATAGCGAGTATGATCAGCTATTTAATACCAATCTCAAGTTAG
AACAAAAATTTCCTCATTTAATTTTAGAAAATAGTCCTAGCAAAAAAGTAGGGGCTAAAATAGCAAATAAATTTGCTAAA
GTTACGCATCAAGTGCCCATGCTATCTCTCAGTAATGCTTTTGATGAGCAAGATGTGAGAGATTTTGTAGACCGCATAAA
AATTTTCTTACGCCTTAATGAGTTTGCTCCTATCTTTTGTGAACCTAAAATAGACGGTGTGTCTTTTTCTGCTGTTTATA
AACACGGGGTGCTTACAACGGGAGCTACAAGAGGTGACGGATATGTCGGTGAAGATATAACAGCAAATATTAAAACAATC
AAAAATTTTCCTCATAAAATAGATAATGTTCCGGAGTTTTTAGAAGTACGAGGGGAAATTTATATTGAAAAACAAGATTT
TTTAAATCTAAATAAAGAACAAGAAGAGCAGGGCAAGGATAAATTTGCCAATCCTCGTAATGCTGCTGCCGGATCACTTC
GTCAGCTTGATTCTTCTATTACGGCTAAAAGACCGCTCAAATATTTTGTATATTCAGGAGGGGTAACTGAACAGAATCTC
GCTTCTTCACAAGATCAATTACTTACAAAATTAAAAGAATGCGGCTTTAACATTAATGAAATATCTAAACTTGCGAGTTC
TGAAGAAGAAATTTTTGCCTTTTACGAATATCTCAAAACAAATAGAGAAAATTTACCTTATGAAATTGATGGAGTAGTAT
ATAAGCTAAATGATTTTGCACTGCAAAATAGAATGGGCTTTATTGCACGAAATCCACGCTTTGCTACCGCTCATAAATTT
CCTGCAATAATAGGACAAACAAAGTTACTTTCTATTACTGTACAGGTCGGTAGAACTGGTACGTTAACGCCAGTAGCCGA
ACTTGAACCCATAGAAATAGGCGGGGTCACTGTTAGTAGAGCAACATTACATAATTTCCAAGAAATTGCACGAAAAGATT
TGCGGATTAAGGATTATGTATTCCTGCAACGTGCTGGTGACGTTATTCCTAAAATCATGGGAGTTGATTTTGATAAACGT
CCTAATGATACAGAAACGTTTGATACTCCTTTATTTTGTCTGTCATGCAATTCTAAATTGCATTATACGCCTGAAGATAT
TATTATACGCTGTGATAATGGCCTTAACTGCCCTGCTCAGAATTATGAGCGTATCCGTCATTTTGTATCGAAAAATGCTA
TGGATATTGAGGGGCTTGGGCGTAAGCAAGTTGAGTTTTTAATAGATAAGGGATTGATTAGTAATCCTTTAGATATTTTC
TTTTTAAAAGAAAAAAATGACTCTAGCTTAGCAAAACTTGAAAATATGGATGGATGGGGTAAAAAATCAGTAGAAAATCT
TTTTAAAAATATAGAAAAATCAAAAAACGTTAGTTTGCCAAGATTTATATATGCATTAGGCATAAGGCATATCGGTGAAC
AAAATGCTAAATTACTTGCTAGAGAATTTGGCAGCTATAATAATTTTATAGCTCAAATGGAATTGCTTAGAACAAATGAG
CCTGATATTTATCAAAAACTAAACAATTTAGAAGGAATCGGTGATAAGATTTTAGTAGATATTATTGATTTTTTTGATGT
TAAAGAAAATATTGAGCTTATCAAAAAACTTGGTGAAATATTAAATATTGAAGATTATAAAGAGACTAGAGAACAGAGTA
GTTTAACGGACAAGATAGTCGTATTTACCGGTAGTTTACCGACGATATCTAGAGCAGAAGCTAAAGCAACGGCTGAGAAG
CTTGGGGCTAAAGTTGCAGTTGGCGTATCATCGAACACGGATTTAGTTGTAGCCGGCGTTGATGCAGGCAGTAAACTTAA
AAAAGCTAAAGAGCTTAATATTAAAATTATTGATGAAGAAGAATGGCTTACACTTATAAAAAATGTTTAA

Upstream 100 bases:

>100_bases
AATGCTGAAAGACTAAAACGAGCAATTAGCGATTTTGAAGAAAATAAAAATTTTAGGAATTGGATTTGATTGTAAATTAA
AATAAAAGTATGAACTACTA

Downstream 100 bases:

>100_bases
AGCAAGGCATTGCTAACTAAATGATAGTAAATAAAAAACTCGATGTCATTCCCGCTTTCGCGAAAATGACATCGGAAAGC
TAAACTACACTATAAAACAA

Product: NAD-dependent DNA ligase LigA

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>689_residues
MQNIDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILENSPSKKVGAKIANKFAK
VTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIFCEPKIDGVSFSAVYKHGVLTTGATRGDGYVGEDITANIKTI
KNFPHKIDNVPEFLEVRGEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTEQNL
ASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARNPRFATAHKF
PAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEIARKDLRIKDYVFLQRAGDVIPKIMGVDFDKR
PNDTETFDTPLFCLSCNSKLHYTPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDKGLISNPLDIF
FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNE
PDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGEILNIEDYKETREQSSLTDKIVVFTGSLPTISRAEAKATAEK
LGAKVAVGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIKNV

Sequences:
NA

Specific function: NA

COG id: COG0272

COG function: function code L; NAD-dependent DNA ligase (contains BRCT domain type II)

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA