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The map label for this gene is rhcC1

Identifier: 16520036

GI number: 16520036

Start: 84372

End: 85076

Strand: Direct

Name: rhcC1

Synonym: NGR_a00690

Alternate gene names: 16520036

Gene position: 84372-85076 (Clockwise)

Preceding gene: 16519641

Following gene: 16520035

Centisome position: 15.74

GC content: 55.89

Gene sequence:

>705_bases
ATGCCGACAACGCCGATCCCATTCACACCGCTTCATATGTTTAGGAGACTGCTCTGTGTCGGGCTTTTTCTATTTGCCGG
AATCCACACAACTCTCGGGGCCACCCTGCCACTCCCCTCGACCTCCTATAAGTATACGGTTCTAGATCAGGATCTCTCTG
CCGCGTTGCAGGAGTTCGGCAACAACCTGAAAATCAGTGTTAACATCAGCGCAGAGGTGAAGGGGCGGATTCGCGGGCGT
ATACCGGAGTTGTCACCGCGCGAGTTCCTCGACCGATTGACCGATCTCTACGATCTCCAATGGTATTATGACGGGGTTGT
GCTCTATGTGTCTGCTGCAAAAGAAGCACAAACTCGGATGCTTGTGTTGAGTTCAGTTCACTTTAGTGCTTTCAAGCTCG
CCCTCGATAAGCTTGACATCTCTGATGAGCGCTATCCGGTGAGACCCGCGCCGGGAAATGGCCTGGTCTTAGTGTCCGGC
CCGCCGCGCTTCATGGCGCTCATCGAGCAGACGTTGAACGGTCTACTGGCAGTGGCGCAGGCGCAGCCTCGCGCAACCGA
TACGCCCGCCAGGGAATCTGTGATGGTACTGTTTCGGGGCTCCTCCACCACGGTCGTCCGCGGCGGGAGACCGGAAGTCT
TTTATACTTCTGAGATGCTGCCAGAGAACGACGATGGCGGGAAGGCTGAGCTGAGCAAGAAATGA

Upstream 100 bases:

>100_bases
CGACACGCTGACTACCGGCAGCGTCGCTTGCCCATTGAAGAGTGATGTTAGTCGAGTTGAACCGCATGGGAGATTTTCAG
ATTTGGTTTATCAAGACGAG

Downstream 100 bases:

>100_bases
AATTCAGACTTTAGGATTAGAACCTCACTGCGGTCACCTCTTGATTGTTATTCGTCTGAGCCTCGTCAGTTTCTCGAAAG
CTAAACCGCTCATGATGTGA

Product: outer membrane protein RhcC1; component of type III secretion apparatus

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MPTTPIPFTPLHMFRRLLCVGLFLFAGIHTTLGATLPLPSTSYKYTVLDQDLSAALQEFGNNLKISVNISAEVKGRIRGR
IPELSPREFLDRLTDLYDLQWYYDGVVLYVSAAKEAQTRMLVLSSVHFSAFKLALDKLDISDERYPVRPAPGNGLVLVSG
PPRFMALIEQTLNGLLAVAQAQPRATDTPARESVMVLFRGSSTTVVRGGRPEVFYTSEMLPENDDGGKAELSKK

Sequences:

>Translated_234_residues
MPTTPIPFTPLHMFRRLLCVGLFLFAGIHTTLGATLPLPSTSYKYTVLDQDLSAALQEFGNNLKISVNISAEVKGRIRGR
IPELSPREFLDRLTDLYDLQWYYDGVVLYVSAAKEAQTRMLVLSSVHFSAFKLALDKLDISDERYPVRPAPGNGLVLVSG
PPRFMALIEQTLNGLLAVAQAQPRATDTPARESVMVLFRGSSTTVVRGGRPEVFYTSEMLPENDDGGKAELSKK
>Mature_233_residues
PTTPIPFTPLHMFRRLLCVGLFLFAGIHTTLGATLPLPSTSYKYTVLDQDLSAALQEFGNNLKISVNISAEVKGRIRGRI
PELSPREFLDRLTDLYDLQWYYDGVVLYVSAAKEAQTRMLVLSSVHFSAFKLALDKLDISDERYPVRPAPGNGLVLVSGP
PRFMALIEQTLNGLLAVAQAQPRATDTPARESVMVLFRGSSTTVVRGGRPEVFYTSEMLPENDDGGKAELSKK

Specific function: Regulates cultivar-specific nodulation of soybean [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25847; Mature: 25716

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTTPIPFTPLHMFRRLLCVGLFLFAGIHTTLGATLPLPSTSYKYTVLDQDLSAALQEFG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHCC
NNLKISVNISAEVKGRIRGRIPELSPREFLDRLTDLYDLQWYYDGVVLYVSAAKEAQTRM
CCEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHEEECCEEEEEECCHHHHHHE
LVLSSVHFSAFKLALDKLDISDERYPVRPAPGNGLVLVSGPPRFMALIEQTLNGLLAVAQ
EHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHEEHHC
AQPRATDTPARESVMVLFRGSSTTVVRGGRPEVFYTSEMLPENDDGGKAELSKK
CCCCCCCCCCCCEEEEEEECCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PTTPIPFTPLHMFRRLLCVGLFLFAGIHTTLGATLPLPSTSYKYTVLDQDLSAALQEFG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHCC
NNLKISVNISAEVKGRIRGRIPELSPREFLDRLTDLYDLQWYYDGVVLYVSAAKEAQTRM
CCEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHEEECCEEEEEECCHHHHHHE
LVLSSVHFSAFKLALDKLDISDERYPVRPAPGNGLVLVSGPPRFMALIEQTLNGLLAVAQ
EHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHEEHHC
AQPRATDTPARESVMVLFRGSSTTVVRGGRPEVFYTSEMLPENDDGGKAELSKK
CCCCCCCCCCCCEEEEEEECCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412662 [H]