Definition Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence.
Accession NC_000914
Length 536,165

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Identifier: 16519916

GI number: 16519916

Start: 239641

End: 241260

Strand: Direct

Name: Not Available

Synonym: NGR_a01890

Alternate gene names: NA

Gene position: 239641-241260 (Clockwise)

Preceding gene: 16519917

Following gene: 16519915

Centisome position: 44.7

GC content: 63.09

Gene sequence:

>1620_bases
ATGGTTTTGCCTGTTGCCGATCTTCCCGACGACGTCGATGCGCTGAAAGCGATGATCCTCGCAATGGCCAAGGAGCGAGC
TGCGAACGAGGCCCGACTTGCAGCCGCGGCGGCAGAGGTCGCCCGGCTGAAGGCCGTCGAGAAAAGCGCCAACGAGCGGA
TCGCCAACCTCACGTCGATCCTGAAAGTTCTGCAGCGCACGCAACATGGCACGCGGTCCGAGCGGCTGCGCTTGGCTGTC
AACGACGAACAGGTGTCCTTTGCGTTCGAGGAGGTCGAAACCGGCCTTTCGGAAATCCAGAGCGAACTCAACCGCGCGGC
CGGGGACAAGCCGAAGCGTGCGCCGCGTCCGCGCAAGGGCTTTGCCGCACACCTCGAACGCATCGAGGAGGTTATCGAGC
CGGAAGTCCCGGCCGACTGCGCGGGGCTGGAAAAGGTTCTGATCGGCGAGGACCGCTCCGAGCGGCTGGACGTCGTGCCG
CCGAAGTTCCGGGTCATCGTGACGCGCCGCCCGAAATACGCTTTCCGAGGCCGCGACGGCGTGGTTCAGGCACTGGCGCC
GGCACACCTCATCGAAAGCGGCCTGCCGACGGAGCGGCTGCTCGCCTATATCGCCGTGTCAAAATACGCCGACGGCCTTC
CGCTTTACCGGCAGGAGGCGATCTATCTGCGCGATGGTGTCGAGGTCAGCCGATCACTGATGGCGCAGTGGATGGGGCAT
CTGGGCTTCGAGTTGCAGATGCTCGCCGATTATATCCTGGAGCGCGTCAAGGAGGGCGAAAGGGTCTTCGCCGACGAGAC
GACCTTGCCCACCCTTGCCCCCGGTTCCGGGAAAACCACCAAGGCCTGGCTGTGGGCTTACGCACGCGATGATCGACCCT
ATGGCGGAACCAGTCCGCCGATGGTGGCCTACCGTTTTGAAGACGGCAGGGGCGCCGATTGCGTGGCGCGTCATCTCGCC
GGATTCAGCGGCATTCTGCAAGTGGATGGCTACTCAGCTTATACCAACCTGGCCAAGGCGCGGGCCAAAACCGGCAGCAA
TGAAACGATCCAGCTCGCAGGGTGCTGGGCGCACCTGCGCCGCAAGTTTTACGACCTGCACATCAGCGGGGTCTCGCAAG
CCGCAACGGATTCAATCATCGCCATGACCGAGTTGTGGAGGCTCGAGGATGAAGTGCGCGGCAAGGATGCCGCAAGCCGC
GCTGAACTCCGCCAGGAAAAGTCCTCGGCCATCGTCGCCAGCCTCTTCGAGCTGTGGGAAAAGGAGCTGGGCAAGGTCTC
GGGAAAATCCAAAACCGCCGAGGCGATCCGCTACGCGCTCACCCGGCGCGAGGCGCTGGAGCGCTTTCTGACGGACGGCC
GTATCGAGATCGACTCCAACATCGTCGAACGGGCGATCAGGCCCCAAACGATTACGAGAAAGAACAGTCTATTCGCCGGC
AGCGAGGGCGGTGGACGAACCTGGGCGACGGTGGCCACCTTGCTGCAGACCTGCAAAATGAATGGCGTCGATCCGCTCGA
CTGGCTCTCGCAGACCTTGACCCGCATTGCTCAAGGCTGGCCCGCATCCGAAATCGAAGCGCTCATGCCCTGGAACTTCA
AGCCTGACGCTATCGGCTGA

Upstream 100 bases:

>100_bases
AGGCGGCCGTTGTTAACGGGCTGAAACCGGCCTGCGACATGATGAATCATGTGGCTGTAACGGTTGGGAAAACGGCTGTT
TTTGTGCTCTATTGCCTCCC

Downstream 100 bases:

>100_bases
CCGCTTACGATTTCTCTGACTGTGAGGATCTATGTCTACGCCTACAGCTAGCCCTAGCAGGCTGTTGAAGAAGTCTCCTG
TTTGGCCCTGAGTATGGCCT

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 539

Protein sequence:

>539_residues
MVLPVADLPDDVDALKAMILAMAKERAANEARLAAAAAEVARLKAVEKSANERIANLTSILKVLQRTQHGTRSERLRLAV
NDEQVSFAFEEVETGLSEIQSELNRAAGDKPKRAPRPRKGFAAHLERIEEVIEPEVPADCAGLEKVLIGEDRSERLDVVP
PKFRVIVTRRPKYAFRGRDGVVQALAPAHLIESGLPTERLLAYIAVSKYADGLPLYRQEAIYLRDGVEVSRSLMAQWMGH
LGFELQMLADYILERVKEGERVFADETTLPTLAPGSGKTTKAWLWAYARDDRPYGGTSPPMVAYRFEDGRGADCVARHLA
GFSGILQVDGYSAYTNLAKARAKTGSNETIQLAGCWAHLRRKFYDLHISGVSQAATDSIIAMTELWRLEDEVRGKDAASR
AELRQEKSSAIVASLFELWEKELGKVSGKSKTAEAIRYALTRREALERFLTDGRIEIDSNIVERAIRPQTITRKNSLFAG
SEGGGRTWATVATLLQTCKMNGVDPLDWLSQTLTRIAQGWPASEIEALMPWNFKPDAIG

Sequences:

>Translated_539_residues
MVLPVADLPDDVDALKAMILAMAKERAANEARLAAAAAEVARLKAVEKSANERIANLTSILKVLQRTQHGTRSERLRLAV
NDEQVSFAFEEVETGLSEIQSELNRAAGDKPKRAPRPRKGFAAHLERIEEVIEPEVPADCAGLEKVLIGEDRSERLDVVP
PKFRVIVTRRPKYAFRGRDGVVQALAPAHLIESGLPTERLLAYIAVSKYADGLPLYRQEAIYLRDGVEVSRSLMAQWMGH
LGFELQMLADYILERVKEGERVFADETTLPTLAPGSGKTTKAWLWAYARDDRPYGGTSPPMVAYRFEDGRGADCVARHLA
GFSGILQVDGYSAYTNLAKARAKTGSNETIQLAGCWAHLRRKFYDLHISGVSQAATDSIIAMTELWRLEDEVRGKDAASR
AELRQEKSSAIVASLFELWEKELGKVSGKSKTAEAIRYALTRREALERFLTDGRIEIDSNIVERAIRPQTITRKNSLFAG
SEGGGRTWATVATLLQTCKMNGVDPLDWLSQTLTRIAQGWPASEIEALMPWNFKPDAIG
>Mature_539_residues
MVLPVADLPDDVDALKAMILAMAKERAANEARLAAAAAEVARLKAVEKSANERIANLTSILKVLQRTQHGTRSERLRLAV
NDEQVSFAFEEVETGLSEIQSELNRAAGDKPKRAPRPRKGFAAHLERIEEVIEPEVPADCAGLEKVLIGEDRSERLDVVP
PKFRVIVTRRPKYAFRGRDGVVQALAPAHLIESGLPTERLLAYIAVSKYADGLPLYRQEAIYLRDGVEVSRSLMAQWMGH
LGFELQMLADYILERVKEGERVFADETTLPTLAPGSGKTTKAWLWAYARDDRPYGGTSPPMVAYRFEDGRGADCVARHLA
GFSGILQVDGYSAYTNLAKARAKTGSNETIQLAGCWAHLRRKFYDLHISGVSQAATDSIIAMTELWRLEDEVRGKDAASR
AELRQEKSSAIVASLFELWEKELGKVSGKSKTAEAIRYALTRREALERFLTDGRIEIDSNIVERAIRPQTITRKNSLFAG
SEGGGRTWATVATLLQTCKMNGVDPLDWLSQTLTRIAQGWPASEIEALMPWNFKPDAIG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 25 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4QI_RHISN (P55630)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444036.1
- GeneID:   962414
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01890
- HOGENOM:   HBG741435
- ProtClustDB:   CLSK886514
- InterPro:   IPR004291

Pfam domain/function: PF03050 Transposase_25

EC number: NA

Molecular weight: Translated: 59686; Mature: 59686

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLPVADLPDDVDALKAMILAMAKERAANEARLAAAAAEVARLKAVEKSANERIANLTSI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKVLQRTQHGTRSERLRLAVNDEQVSFAFEEVETGLSEIQSELNRAAGDKPKRAPRPRKG
HHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
FAAHLERIEEVIEPEVPADCAGLEKVLIGEDRSERLDVVPPKFRVIVTRRPKYAFRGRDG
HHHHHHHHHHHHCCCCCCCHHCCHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEECCCCH
VVQALAPAHLIESGLPTERLLAYIAVSKYADGLPLYRQEAIYLRDGVEVSRSLMAQWMGH
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
LGFELQMLADYILERVKEGERVFADETTLPTLAPGSGKTTKAWLWAYARDDRPYGGTSPP
CCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCC
MVAYRFEDGRGADCVARHLAGFSGILQVDGYSAYTNLAKARAKTGSNETIQLAGCWAHLR
EEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHH
RKFYDLHISGVSQAATDSIIAMTELWRLEDEVRGKDAASRAELRQEKSSAIVASLFELWE
HHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KELGKVSGKSKTAEAIRYALTRREALERFLTDGRIEIDSNIVERAIRPQTITRKNSLFAG
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCHHCCCCCEECC
SEGGGRTWATVATLLQTCKMNGVDPLDWLSQTLTRIAQGWPASEIEALMPWNFKPDAIG
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MVLPVADLPDDVDALKAMILAMAKERAANEARLAAAAAEVARLKAVEKSANERIANLTSI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKVLQRTQHGTRSERLRLAVNDEQVSFAFEEVETGLSEIQSELNRAAGDKPKRAPRPRKG
HHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
FAAHLERIEEVIEPEVPADCAGLEKVLIGEDRSERLDVVPPKFRVIVTRRPKYAFRGRDG
HHHHHHHHHHHHCCCCCCCHHCCHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEECCCCH
VVQALAPAHLIESGLPTERLLAYIAVSKYADGLPLYRQEAIYLRDGVEVSRSLMAQWMGH
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
LGFELQMLADYILERVKEGERVFADETTLPTLAPGSGKTTKAWLWAYARDDRPYGGTSPP
CCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCC
MVAYRFEDGRGADCVARHLAGFSGILQVDGYSAYTNLAKARAKTGSNETIQLAGCWAHLR
EEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHH
RKFYDLHISGVSQAATDSIIAMTELWRLEDEVRGKDAASRAELRQEKSSAIVASLFELWE
HHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KELGKVSGKSKTAEAIRYALTRREALERFLTDGRIEIDSNIVERAIRPQTITRKNSLFAG
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCHHCCCCCEECC
SEGGGRTWATVATLLQTCKMNGVDPLDWLSQTLTRIAQGWPASEIEALMPWNFKPDAIG
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424