Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519916
GI number: 16519916
Start: 239641
End: 241260
Strand: Direct
Name: Not Available
Synonym: NGR_a01890
Alternate gene names: NA
Gene position: 239641-241260 (Clockwise)
Preceding gene: 16519917
Following gene: 16519915
Centisome position: 44.7
GC content: 63.09
Gene sequence:
>1620_bases ATGGTTTTGCCTGTTGCCGATCTTCCCGACGACGTCGATGCGCTGAAAGCGATGATCCTCGCAATGGCCAAGGAGCGAGC TGCGAACGAGGCCCGACTTGCAGCCGCGGCGGCAGAGGTCGCCCGGCTGAAGGCCGTCGAGAAAAGCGCCAACGAGCGGA TCGCCAACCTCACGTCGATCCTGAAAGTTCTGCAGCGCACGCAACATGGCACGCGGTCCGAGCGGCTGCGCTTGGCTGTC AACGACGAACAGGTGTCCTTTGCGTTCGAGGAGGTCGAAACCGGCCTTTCGGAAATCCAGAGCGAACTCAACCGCGCGGC CGGGGACAAGCCGAAGCGTGCGCCGCGTCCGCGCAAGGGCTTTGCCGCACACCTCGAACGCATCGAGGAGGTTATCGAGC CGGAAGTCCCGGCCGACTGCGCGGGGCTGGAAAAGGTTCTGATCGGCGAGGACCGCTCCGAGCGGCTGGACGTCGTGCCG CCGAAGTTCCGGGTCATCGTGACGCGCCGCCCGAAATACGCTTTCCGAGGCCGCGACGGCGTGGTTCAGGCACTGGCGCC GGCACACCTCATCGAAAGCGGCCTGCCGACGGAGCGGCTGCTCGCCTATATCGCCGTGTCAAAATACGCCGACGGCCTTC CGCTTTACCGGCAGGAGGCGATCTATCTGCGCGATGGTGTCGAGGTCAGCCGATCACTGATGGCGCAGTGGATGGGGCAT CTGGGCTTCGAGTTGCAGATGCTCGCCGATTATATCCTGGAGCGCGTCAAGGAGGGCGAAAGGGTCTTCGCCGACGAGAC GACCTTGCCCACCCTTGCCCCCGGTTCCGGGAAAACCACCAAGGCCTGGCTGTGGGCTTACGCACGCGATGATCGACCCT ATGGCGGAACCAGTCCGCCGATGGTGGCCTACCGTTTTGAAGACGGCAGGGGCGCCGATTGCGTGGCGCGTCATCTCGCC GGATTCAGCGGCATTCTGCAAGTGGATGGCTACTCAGCTTATACCAACCTGGCCAAGGCGCGGGCCAAAACCGGCAGCAA TGAAACGATCCAGCTCGCAGGGTGCTGGGCGCACCTGCGCCGCAAGTTTTACGACCTGCACATCAGCGGGGTCTCGCAAG CCGCAACGGATTCAATCATCGCCATGACCGAGTTGTGGAGGCTCGAGGATGAAGTGCGCGGCAAGGATGCCGCAAGCCGC GCTGAACTCCGCCAGGAAAAGTCCTCGGCCATCGTCGCCAGCCTCTTCGAGCTGTGGGAAAAGGAGCTGGGCAAGGTCTC GGGAAAATCCAAAACCGCCGAGGCGATCCGCTACGCGCTCACCCGGCGCGAGGCGCTGGAGCGCTTTCTGACGGACGGCC GTATCGAGATCGACTCCAACATCGTCGAACGGGCGATCAGGCCCCAAACGATTACGAGAAAGAACAGTCTATTCGCCGGC AGCGAGGGCGGTGGACGAACCTGGGCGACGGTGGCCACCTTGCTGCAGACCTGCAAAATGAATGGCGTCGATCCGCTCGA CTGGCTCTCGCAGACCTTGACCCGCATTGCTCAAGGCTGGCCCGCATCCGAAATCGAAGCGCTCATGCCCTGGAACTTCA AGCCTGACGCTATCGGCTGA
Upstream 100 bases:
>100_bases AGGCGGCCGTTGTTAACGGGCTGAAACCGGCCTGCGACATGATGAATCATGTGGCTGTAACGGTTGGGAAAACGGCTGTT TTTGTGCTCTATTGCCTCCC
Downstream 100 bases:
>100_bases CCGCTTACGATTTCTCTGACTGTGAGGATCTATGTCTACGCCTACAGCTAGCCCTAGCAGGCTGTTGAAGAAGTCTCCTG TTTGGCCCTGAGTATGGCCT
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 539; Mature: 539
Protein sequence:
>539_residues MVLPVADLPDDVDALKAMILAMAKERAANEARLAAAAAEVARLKAVEKSANERIANLTSILKVLQRTQHGTRSERLRLAV NDEQVSFAFEEVETGLSEIQSELNRAAGDKPKRAPRPRKGFAAHLERIEEVIEPEVPADCAGLEKVLIGEDRSERLDVVP PKFRVIVTRRPKYAFRGRDGVVQALAPAHLIESGLPTERLLAYIAVSKYADGLPLYRQEAIYLRDGVEVSRSLMAQWMGH LGFELQMLADYILERVKEGERVFADETTLPTLAPGSGKTTKAWLWAYARDDRPYGGTSPPMVAYRFEDGRGADCVARHLA GFSGILQVDGYSAYTNLAKARAKTGSNETIQLAGCWAHLRRKFYDLHISGVSQAATDSIIAMTELWRLEDEVRGKDAASR AELRQEKSSAIVASLFELWEKELGKVSGKSKTAEAIRYALTRREALERFLTDGRIEIDSNIVERAIRPQTITRKNSLFAG SEGGGRTWATVATLLQTCKMNGVDPLDWLSQTLTRIAQGWPASEIEALMPWNFKPDAIG
Sequences:
>Translated_539_residues MVLPVADLPDDVDALKAMILAMAKERAANEARLAAAAAEVARLKAVEKSANERIANLTSILKVLQRTQHGTRSERLRLAV NDEQVSFAFEEVETGLSEIQSELNRAAGDKPKRAPRPRKGFAAHLERIEEVIEPEVPADCAGLEKVLIGEDRSERLDVVP PKFRVIVTRRPKYAFRGRDGVVQALAPAHLIESGLPTERLLAYIAVSKYADGLPLYRQEAIYLRDGVEVSRSLMAQWMGH LGFELQMLADYILERVKEGERVFADETTLPTLAPGSGKTTKAWLWAYARDDRPYGGTSPPMVAYRFEDGRGADCVARHLA GFSGILQVDGYSAYTNLAKARAKTGSNETIQLAGCWAHLRRKFYDLHISGVSQAATDSIIAMTELWRLEDEVRGKDAASR AELRQEKSSAIVASLFELWEKELGKVSGKSKTAEAIRYALTRREALERFLTDGRIEIDSNIVERAIRPQTITRKNSLFAG SEGGGRTWATVATLLQTCKMNGVDPLDWLSQTLTRIAQGWPASEIEALMPWNFKPDAIG >Mature_539_residues MVLPVADLPDDVDALKAMILAMAKERAANEARLAAAAAEVARLKAVEKSANERIANLTSILKVLQRTQHGTRSERLRLAV NDEQVSFAFEEVETGLSEIQSELNRAAGDKPKRAPRPRKGFAAHLERIEEVIEPEVPADCAGLEKVLIGEDRSERLDVVP PKFRVIVTRRPKYAFRGRDGVVQALAPAHLIESGLPTERLLAYIAVSKYADGLPLYRQEAIYLRDGVEVSRSLMAQWMGH LGFELQMLADYILERVKEGERVFADETTLPTLAPGSGKTTKAWLWAYARDDRPYGGTSPPMVAYRFEDGRGADCVARHLA GFSGILQVDGYSAYTNLAKARAKTGSNETIQLAGCWAHLRRKFYDLHISGVSQAATDSIIAMTELWRLEDEVRGKDAASR AELRQEKSSAIVASLFELWEKELGKVSGKSKTAEAIRYALTRREALERFLTDGRIEIDSNIVERAIRPQTITRKNSLFAG SEGGGRTWATVATLLQTCKMNGVDPLDWLSQTLTRIAQGWPASEIEALMPWNFKPDAIG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 25 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4QI_RHISN (P55630)
Other databases:
- EMBL: U00090 - RefSeq: NP_444036.1 - GeneID: 962414 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01890 - HOGENOM: HBG741435 - ProtClustDB: CLSK886514 - InterPro: IPR004291
Pfam domain/function: PF03050 Transposase_25
EC number: NA
Molecular weight: Translated: 59686; Mature: 59686
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLPVADLPDDVDALKAMILAMAKERAANEARLAAAAAEVARLKAVEKSANERIANLTSI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKVLQRTQHGTRSERLRLAVNDEQVSFAFEEVETGLSEIQSELNRAAGDKPKRAPRPRKG HHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH FAAHLERIEEVIEPEVPADCAGLEKVLIGEDRSERLDVVPPKFRVIVTRRPKYAFRGRDG HHHHHHHHHHHHCCCCCCCHHCCHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEECCCCH VVQALAPAHLIESGLPTERLLAYIAVSKYADGLPLYRQEAIYLRDGVEVSRSLMAQWMGH HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH LGFELQMLADYILERVKEGERVFADETTLPTLAPGSGKTTKAWLWAYARDDRPYGGTSPP CCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCC MVAYRFEDGRGADCVARHLAGFSGILQVDGYSAYTNLAKARAKTGSNETIQLAGCWAHLR EEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHH RKFYDLHISGVSQAATDSIIAMTELWRLEDEVRGKDAASRAELRQEKSSAIVASLFELWE HHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH KELGKVSGKSKTAEAIRYALTRREALERFLTDGRIEIDSNIVERAIRPQTITRKNSLFAG HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCHHCCCCCEECC SEGGGRTWATVATLLQTCKMNGVDPLDWLSQTLTRIAQGWPASEIEALMPWNFKPDAIG CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MVLPVADLPDDVDALKAMILAMAKERAANEARLAAAAAEVARLKAVEKSANERIANLTSI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKVLQRTQHGTRSERLRLAVNDEQVSFAFEEVETGLSEIQSELNRAAGDKPKRAPRPRKG HHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH FAAHLERIEEVIEPEVPADCAGLEKVLIGEDRSERLDVVPPKFRVIVTRRPKYAFRGRDG HHHHHHHHHHHHCCCCCCCHHCCHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEECCCCH VVQALAPAHLIESGLPTERLLAYIAVSKYADGLPLYRQEAIYLRDGVEVSRSLMAQWMGH HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH LGFELQMLADYILERVKEGERVFADETTLPTLAPGSGKTTKAWLWAYARDDRPYGGTSPP CCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCC MVAYRFEDGRGADCVARHLAGFSGILQVDGYSAYTNLAKARAKTGSNETIQLAGCWAHLR EEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHH RKFYDLHISGVSQAATDSIIAMTELWRLEDEVRGKDAASRAELRQEKSSAIVASLFELWE HHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH KELGKVSGKSKTAEAIRYALTRREALERFLTDGRIEIDSNIVERAIRPQTITRKNSLFAG HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCHHCCCCCEECC SEGGGRTWATVATLLQTCKMNGVDPLDWLSQTLTRIAQGWPASEIEALMPWNFKPDAIG CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424