Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 16519894

GI number: 16519894

Start: 277554

End: 279383

Strand: Reverse

Name: Not Available

Synonym: NGR_a02110

Alternate gene names: 16519894

Gene position: 279383-277554 (Counterclockwise)

Preceding gene: 16519893

Following gene: 16519895

Centisome position: 52.11

GC content: 57.98

Gene sequence:

>1830_bases
ATGGCTGATCCGATCGTTCATCCTGGGGTTCATCGTCCCGAATTCTCCGCTCCCCTCCACGCGAGAGCGGAGATTATCGC
GACACTCAGGGCCGCGCTTGGCAAGCCAAACACGACTCTCGTTGGTGCTGCGATCGGCACGGGAATGGCCGCCCAGGCAG
CCTCGCGGGGCGGCGCAGACTTTATCCTTGCCCTGAATGCGGGACGTTTGCGTAGCATGGGCGCCCCTTCTATCTTTTCC
CTGCTCGCATTGCGCAAGAGCAACGACTTTGTCCTGGATTTCGCTCAATCAGAGATTCTGCCTTTCGTTAAAGTTCCAGT
CTTTTTCGGCGCCAGTGCTTTCGATCCCCGGTGTTCGATAGAAGCTGAACTGGAAAGAATTGCGGATGCTGGTTTTGGCG
CAATTGTAAACTTCCCCACCTCCATTTTTCTCGATGGACGGTTTCGAGCCGATATCGAGGGAGCAGGGCTGGGGTTCCAG
CGTGAGCTTGAAATGCTTCGGGCCGCTCAGAAAAGAAATATGGCGACTCTCGCCTATGTTCGAACTGTGGCCGAGGCTCA
GCAGGCCGCGACCGCCGGCGTGGACATCATAAATCTCAATCTCGGCTGGAACGTCGGAGGGACTGTCGGAAGCCGCACAG
AGCTCAGCCTGAGGCAAGCGGCTGAGTATGCGAAGATCATTTTCCGTCAGATACGGGCCATCTCGGAGGATACTCTTTGT
GTCCTCGAGGGCGGCCCCATCGTCAGCCCCGACCAAATGTACGAGGTATCCGCACTGTCCAAGGCAGACGGATACATCGG
CGGCTCCACCATCGATCGGGTGCCTCTCGAAGCCTCGATGGAGCAGATTACATCGGCTTTCAAATCCGTCGGCACCTTGC
AAAAGCGAATTGATGAACTGGAGCGCCAGCTCGAGCATGTGCAGCGCGAATACTCGATCGTTGGTCGGTCACCTTCGATC
CAGCAAATCAAGCAACGTATCGAAAAGCTTGCCGCTTCTAGTCTCCCGGTCATGATTACCGGACAAGCCGGAACCGGCAA
AAAACTTCTGGCACGGGGTATTCATGAAGCTGCCAGACGTTCCGGCAGCAAGCTCATCAGCTCAGAAGACGCAAGTGGGG
AATCGCTTTTTGGCTTCGCCCCGAGCGAGGGCGGCAGGAAGGTGCTTGGGCTACTCCAATACCATCCCAAAGCAACCCTG
CTGATCGAGAGCGTCGAATGCCTGTGCGTCGACGCTCAGGAACGTCTGATAGAAGTCATCGAGACAGGCGCTTATCGGCG
CCTGGGCGACAACGAGAGAGGGCGGTTCGAAGGCCGCCTGATCCTGGCATCGACGCGGCCGCTTCCTGAGTTGGGCTCGA
GCGGGCAGCTGATACCTGCTCTTGAGTCGCGTCTCGCGCCGGGTCACGTCTTTCTTCCCCCTCTATGCGATCGCCTCGAA
GATCTTCCACTCCTAGCTGAACACTTCCTACAAGCGCTCCGAAAGGATCGTCGTAGCCGGAAGCTGTCGGTGGACCACTC
GGCCTATCGAGTTCTGATGACCTATGGCTGGCCAGAAAATATTCGCGAGCTCAGATCCGTGCTCGAAACGGCCGCCATCC
GCTGCGAAGGCGACTGGATCAAGTCCGAGCATCTGCCGCCGCTCGGTGACGCGAACGCGGACGCGCCGCATCCGCATCCG
GGGGAAGAGCGGGAATGGATCCTGGATGCGCTTCAGCGCCATCGGTTTCGCCGCGGTGAAGCCGCCCGATATCTCGGGAT
ATCTCGAAAGACCCTATACAACAAAATGCGAGTGTACGGTCTCCCGTTGCAGCCAAGAGAAAGATCCTAG

Upstream 100 bases:

>100_bases
AGCGTCCGGCTGGGTCAACCGGTGAAAGTGCAGGAATTCCTCCAGTCCTACCGAGTGGGGGCTTCGATCGAGTAACGATA
AGATGTAGGTTAGCCTCACA

Downstream 100 bases:

>100_bases
GCGAGGGCGCCAAATAACTCCAGGTAGCTTGTTCAGCGACTGCAGCGCCGCCGCCGAACGACCGCAGCCGGAGCGCCCAG
ACCGGTTATTGGGGTCGCGA

Product: sigma-54 dependent transcription regulator y4pA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 609; Mature: 608

Protein sequence:

>609_residues
MADPIVHPGVHRPEFSAPLHARAEIIATLRAALGKPNTTLVGAAIGTGMAAQAASRGGADFILALNAGRLRSMGAPSIFS
LLALRKSNDFVLDFAQSEILPFVKVPVFFGASAFDPRCSIEAELERIADAGFGAIVNFPTSIFLDGRFRADIEGAGLGFQ
RELEMLRAAQKRNMATLAYVRTVAEAQQAATAGVDIINLNLGWNVGGTVGSRTELSLRQAAEYAKIIFRQIRAISEDTLC
VLEGGPIVSPDQMYEVSALSKADGYIGGSTIDRVPLEASMEQITSAFKSVGTLQKRIDELERQLEHVQREYSIVGRSPSI
QQIKQRIEKLAASSLPVMITGQAGTGKKLLARGIHEAARRSGSKLISSEDASGESLFGFAPSEGGRKVLGLLQYHPKATL
LIESVECLCVDAQERLIEVIETGAYRRLGDNERGRFEGRLILASTRPLPELGSSGQLIPALESRLAPGHVFLPPLCDRLE
DLPLLAEHFLQALRKDRRSRKLSVDHSAYRVLMTYGWPENIRELRSVLETAAIRCEGDWIKSEHLPPLGDANADAPHPHP
GEEREWILDALQRHRFRRGEAARYLGISRKTLYNKMRVYGLPLQPRERS

Sequences:

>Translated_609_residues
MADPIVHPGVHRPEFSAPLHARAEIIATLRAALGKPNTTLVGAAIGTGMAAQAASRGGADFILALNAGRLRSMGAPSIFS
LLALRKSNDFVLDFAQSEILPFVKVPVFFGASAFDPRCSIEAELERIADAGFGAIVNFPTSIFLDGRFRADIEGAGLGFQ
RELEMLRAAQKRNMATLAYVRTVAEAQQAATAGVDIINLNLGWNVGGTVGSRTELSLRQAAEYAKIIFRQIRAISEDTLC
VLEGGPIVSPDQMYEVSALSKADGYIGGSTIDRVPLEASMEQITSAFKSVGTLQKRIDELERQLEHVQREYSIVGRSPSI
QQIKQRIEKLAASSLPVMITGQAGTGKKLLARGIHEAARRSGSKLISSEDASGESLFGFAPSEGGRKVLGLLQYHPKATL
LIESVECLCVDAQERLIEVIETGAYRRLGDNERGRFEGRLILASTRPLPELGSSGQLIPALESRLAPGHVFLPPLCDRLE
DLPLLAEHFLQALRKDRRSRKLSVDHSAYRVLMTYGWPENIRELRSVLETAAIRCEGDWIKSEHLPPLGDANADAPHPHP
GEEREWILDALQRHRFRRGEAARYLGISRKTLYNKMRVYGLPLQPRERS
>Mature_608_residues
ADPIVHPGVHRPEFSAPLHARAEIIATLRAALGKPNTTLVGAAIGTGMAAQAASRGGADFILALNAGRLRSMGAPSIFSL
LALRKSNDFVLDFAQSEILPFVKVPVFFGASAFDPRCSIEAELERIADAGFGAIVNFPTSIFLDGRFRADIEGAGLGFQR
ELEMLRAAQKRNMATLAYVRTVAEAQQAATAGVDIINLNLGWNVGGTVGSRTELSLRQAAEYAKIIFRQIRAISEDTLCV
LEGGPIVSPDQMYEVSALSKADGYIGGSTIDRVPLEASMEQITSAFKSVGTLQKRIDELERQLEHVQREYSIVGRSPSIQ
QIKQRIEKLAASSLPVMITGQAGTGKKLLARGIHEAARRSGSKLISSEDASGESLFGFAPSEGGRKVLGLLQYHPKATLL
IESVECLCVDAQERLIEVIETGAYRRLGDNERGRFEGRLILASTRPLPELGSSGQLIPALESRLAPGHVFLPPLCDRLED
LPLLAEHFLQALRKDRRSRKLSVDHSAYRVLMTYGWPENIRELRSVLETAAIRCEGDWIKSEHLPPLGDANADAPHPHPG
EEREWILDALQRHRFRRGEAARYLGISRKTLYNKMRVYGLPLQPRERS

Specific function: Probable transcriptional regulator that acts in conjunction with sigma-54

COG id: COG2204

COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain

Homologues:

Organism=Escherichia coli, GI1788550, Length=335, Percent_Identity=31.3432835820896, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI1790437, Length=304, Percent_Identity=32.8947368421053, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1789087, Length=421, Percent_Identity=27.790973871734, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1787583, Length=328, Percent_Identity=28.9634146341463, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87082117, Length=350, Percent_Identity=28.8571428571429, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI87082152, Length=236, Percent_Identity=30.5084745762712, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1790299, Length=368, Percent_Identity=26.6304347826087, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1788905, Length=231, Percent_Identity=32.9004329004329, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1789233, Length=321, Percent_Identity=27.4143302180685, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87081858, Length=287, Percent_Identity=29.2682926829268, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI87081872, Length=237, Percent_Identity=31.2236286919831, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1786524, Length=316, Percent_Identity=30.6962025316456, Blast_Score=98, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4PA_RHISN (P55610)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444014.1
- ProteinModelPortal:   P55610
- SMR:   P55610
- GeneID:   962394
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a02110
- HOGENOM:   HBG655904
- ProtClustDB:   CLSK507031
- GO:   GO:0005622
- InterPro:   IPR013785
- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR009215
- Gene3D:   G3DSA:3.20.20.70
- PRINTS:   PR01590
- SMART:   SM00382

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat; PF09370 TIM-br_sig_trns; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 66701; Mature: 66570

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS00675 SIGMA54_INTERACT_1; PS00676 SIGMA54_INTERACT_2; PS00688 SIGMA54_INTERACT_3; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADPIVHPGVHRPEFSAPLHARAEIIATLRAALGKPNTTLVGAAIGTGMAAQAASRGGAD
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCHHHHHHCCCCCE
FILALNAGRLRSMGAPSIFSLLALRKSNDFVLDFAQSEILPFVKVPVFFGASAFDPRCSI
EEEEECCCHHCCCCCHHHHHHHHHHCCCCEEEEECHHHCCCCEEHHHHCCCCCCCCCCCH
EAELERIADAGFGAIVNFPTSIFLDGRFRADIEGAGLGFQRELEMLRAAQKRNMATLAYV
HHHHHHHHHCCCCEEEECCCEEEECCCEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
RTVAEAQQAATAGVDIINLNLGWNVGGTVGSRTELSLRQAAEYAKIIFRQIRAISEDTLC
HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
VLEGGPIVSPDQMYEVSALSKADGYIGGSTIDRVPLEASMEQITSAFKSVGTLQKRIDEL
EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ERQLEHVQREYSIVGRSPSIQQIKQRIEKLAASSLPVMITGQAGTGKKLLARGIHEAARR
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
SGSKLISSEDASGESLFGFAPSEGGRKVLGLLQYHPKATLLIESVECLCVDAQERLIEVI
CCCHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECHHHEEECHHHHHHHHH
ETGAYRRLGDNERGRFEGRLILASTRPLPELGSSGQLIPALESRLAPGHVFLPPLCDRLE
HCCCHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCEECCHHHHHHH
DLPLLAEHFLQALRKDRRSRKLSVDHSAYRVLMTYGWPENIRELRSVLETAAIRCEGDWI
CCHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEECCCCHHHHHHHHHHHHHHEEECCCCC
KSEHLPPLGDANADAPHPHPGEEREWILDALQRHRFRRGEAARYLGISRKTLYNKMRVYG
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHCC
LPLQPRERS
CCCCCCCCC
>Mature Secondary Structure 
ADPIVHPGVHRPEFSAPLHARAEIIATLRAALGKPNTTLVGAAIGTGMAAQAASRGGAD
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCHHHHHHCCCCCE
FILALNAGRLRSMGAPSIFSLLALRKSNDFVLDFAQSEILPFVKVPVFFGASAFDPRCSI
EEEEECCCHHCCCCCHHHHHHHHHHCCCCEEEEECHHHCCCCEEHHHHCCCCCCCCCCCH
EAELERIADAGFGAIVNFPTSIFLDGRFRADIEGAGLGFQRELEMLRAAQKRNMATLAYV
HHHHHHHHHCCCCEEEECCCEEEECCCEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
RTVAEAQQAATAGVDIINLNLGWNVGGTVGSRTELSLRQAAEYAKIIFRQIRAISEDTLC
HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
VLEGGPIVSPDQMYEVSALSKADGYIGGSTIDRVPLEASMEQITSAFKSVGTLQKRIDEL
EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ERQLEHVQREYSIVGRSPSIQQIKQRIEKLAASSLPVMITGQAGTGKKLLARGIHEAARR
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
SGSKLISSEDASGESLFGFAPSEGGRKVLGLLQYHPKATLLIESVECLCVDAQERLIEVI
CCCHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECHHHEEECHHHHHHHHH
ETGAYRRLGDNERGRFEGRLILASTRPLPELGSSGQLIPALESRLAPGHVFLPPLCDRLE
HCCCHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCEECCHHHHHHH
DLPLLAEHFLQALRKDRRSRKLSVDHSAYRVLMTYGWPENIRELRSVLETAAIRCEGDWI
CCHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEECCCCHHHHHHHHHHHHHHEEECCCCC
KSEHLPPLGDANADAPHPHPGEEREWILDALQRHRFRRGEAARYLGISRKTLYNKMRVYG
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHCC
LPLQPRERS
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424