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Identifier: 16519863

GI number: 16519863

Start: 320292

End: 321188

Strand: Reverse

Name: Not Available

Synonym: NGR_a02420

Alternate gene names: 16519863

Gene position: 321188-320292 (Counterclockwise)

Preceding gene: 16519853

Following gene: 16519869

Centisome position: 59.9

GC content: 59.98

Gene sequence:

>897_bases
ATGCTGCAGACGACGTCACTCTCCGCTATGCGCATTTTTGAAGCTGCCGCGCGACTCGGTTCGTTCCGGGCAGCCGCGGA
GGAGTTGAACCTCTCGCCGAGTGCCGTCAGTCATGCGATTATGCGGCTGGAACGGGATCTGGGGGTGGCGTTGTTCGAAC
GGACGACGCGCAGCGTTTCGCTGACTGTCGCGGGGCAGACACTACTCAATCATGCGTCCAATGCCTTCGAAGAATTGCGG
CGCGGTGTTGAACAAATTTCATCCAACAAGGCGCAATTGCTGCGACTCCACTGCGCGCCGAGCTTCGCGGCACAGGTGCT
GTCGCCCCGTCTGCCGCAGTTTTTGAAAGAGAATCCCGGCATAGAGGTCCGGGTGGCGGCCAGCACCAACTACGCCCGCT
TCGTCGATGGGCTCTTCGATGCCGATATCGTCTACGGCGAGCCACTCAATCGTGAAGACCTGATCGTCATCCCGCTTTCT
GAAGAAATCGTCTTGCCGCTTTGCGCGCCGGATCTGGCGCACCAAATCAAGTCCCCGCGCGACCTGTTTCACCAACCGCT
GATCCGAAGCGATCTCAAGCGCATCCAGTGGATCGACTGGTTCGAAGCCAATGACCTTGGACCACCACCATCACCATCGA
TGAGTTTTGACCGGAGCTTCCTTGCCGTCGATGCTGCGGTCAACGGGCTCGGAATTGCGCTCGAGTCCGATGTGTTGGCC
AGGCGCGAGCTGGAAAGCGGCAAGTTGGTCCGTCCTCTTCATCGGATCTGTCGCGACAACCGCTATATCGGCCACTATCT
CGCCTATCCAAAATCCGGCAGCCAGCGGCGACTCGCCCGCGCCTTTGCCGATTGGCTGACGCGCGAATGCCAGCCGGCCA
GCACTGGCTCAGAGTAG

Upstream 100 bases:

>100_bases
CCAGGCCTCTGCCTGTCCTCGTGGAAGAGTTGTGGCGTAGCGCGCACCGTCCTTCAAACGCCAACTTTACATCTGTGGGT
GAATCTGATTCACTAATCCC

Downstream 100 bases:

>100_bases
ACATTCCGCCAGGCTTCTCGGCCGCGACGTCTCACTCGTTTCCGAGTGAAGCGGACGAGAAATCTTTCAAGGCCGGTCGC
TCAACCGTATCACTGAAGGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MLQTTSLSAMRIFEAAARLGSFRAAAEELNLSPSAVSHAIMRLERDLGVALFERTTRSVSLTVAGQTLLNHASNAFEELR
RGVEQISSNKAQLLRLHCAPSFAAQVLSPRLPQFLKENPGIEVRVAASTNYARFVDGLFDADIVYGEPLNREDLIVIPLS
EEIVLPLCAPDLAHQIKSPRDLFHQPLIRSDLKRIQWIDWFEANDLGPPPSPSMSFDRSFLAVDAAVNGLGIALESDVLA
RRELESGKLVRPLHRICRDNRYIGHYLAYPKSGSQRRLARAFADWLTRECQPASTGSE

Sequences:

>Translated_298_residues
MLQTTSLSAMRIFEAAARLGSFRAAAEELNLSPSAVSHAIMRLERDLGVALFERTTRSVSLTVAGQTLLNHASNAFEELR
RGVEQISSNKAQLLRLHCAPSFAAQVLSPRLPQFLKENPGIEVRVAASTNYARFVDGLFDADIVYGEPLNREDLIVIPLS
EEIVLPLCAPDLAHQIKSPRDLFHQPLIRSDLKRIQWIDWFEANDLGPPPSPSMSFDRSFLAVDAAVNGLGIALESDVLA
RRELESGKLVRPLHRICRDNRYIGHYLAYPKSGSQRRLARAFADWLTRECQPASTGSE
>Mature_298_residues
MLQTTSLSAMRIFEAAARLGSFRAAAEELNLSPSAVSHAIMRLERDLGVALFERTTRSVSLTVAGQTLLNHASNAFEELR
RGVEQISSNKAQLLRLHCAPSFAAQVLSPRLPQFLKENPGIEVRVAASTNYARFVDGLFDADIVYGEPLNREDLIVIPLS
EEIVLPLCAPDLAHQIKSPRDLFHQPLIRSDLKRIQWIDWFEANDLGPPPSPSMSFDRSFLAVDAAVNGLGIALESDVLA
RRELESGKLVRPLHRICRDNRYIGHYLAYPKSGSQRRLARAFADWLTRECQPASTGSE

Specific function: Apparent Regulatory Gene Involved In Peroxide Resistance In Stationary Phase. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1786448, Length=289, Percent_Identity=48.7889273356401, Blast_Score=275, Evalue=3e-75,
Organism=Escherichia coli, GI1789173, Length=287, Percent_Identity=34.1463414634146, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1788706, Length=307, Percent_Identity=31.9218241042345, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=26.5993265993266, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=28.125, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1786508, Length=142, Percent_Identity=35.2112676056338, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787589, Length=299, Percent_Identity=25.752508361204, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081978, Length=256, Percent_Identity=27.734375, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789639, Length=125, Percent_Identity=32.8, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787601, Length=156, Percent_Identity=30.1282051282051, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786401, Length=300, Percent_Identity=25, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI157672245, Length=157, Percent_Identity=31.8471337579618, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI145693105, Length=122, Percent_Identity=35.2459016393443, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789440, Length=246, Percent_Identity=27.2357723577236, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790208, Length=219, Percent_Identity=28.310502283105, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4MQ_RHISN (P55576)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443983.1
- ProteinModelPortal:   P55576
- GeneID:   962372
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a02420
- HOGENOM:   HBG685425
- ProtClustDB:   CLSK891706
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00039

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 33126; Mature: 33126

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQTTSLSAMRIFEAAARLGSFRAAAEELNLSPSAVSHAIMRLERDLGVALFERTTRSVS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE
LTVAGQTLLNHASNAFEELRRGVEQISSNKAQLLRLHCAPSFAAQVLSPRLPQFLKENPG
EEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCHHHHHHHHCCHHHHHHHCCCC
IEVRVAASTNYARFVDGLFDADIVYGEPLNREDLIVIPLSEEIVLPLCAPDLAHQIKSPR
EEEEEECCCCHHHHHHHHHCCCEEECCCCCCCCEEEEECCCCEEEEECCHHHHHHHCCHH
DLFHQPLIRSDLKRIQWIDWFEANDLGPPPSPSMSFDRSFLAVDAAVNGLGIALESDVLA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECHHHHH
RRELESGKLVRPLHRICRDNRYIGHYLAYPKSGSQRRLARAFADWLTRECQPASTGSE
HHHHCCCCHHHHHHHHHHCCCCEEHEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLQTTSLSAMRIFEAAARLGSFRAAAEELNLSPSAVSHAIMRLERDLGVALFERTTRSVS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE
LTVAGQTLLNHASNAFEELRRGVEQISSNKAQLLRLHCAPSFAAQVLSPRLPQFLKENPG
EEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCHHHHHHHHCCHHHHHHHCCCC
IEVRVAASTNYARFVDGLFDADIVYGEPLNREDLIVIPLSEEIVLPLCAPDLAHQIKSPR
EEEEEECCCCHHHHHHHHHCCCEEECCCCCCCCEEEEECCCCEEEEECCHHHHHHHCCHH
DLFHQPLIRSDLKRIQWIDWFEANDLGPPPSPSMSFDRSFLAVDAAVNGLGIALESDVLA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECHHHHH
RRELESGKLVRPLHRICRDNRYIGHYLAYPKSGSQRRLARAFADWLTRECQPASTGSE
HHHHCCCCHHHHHHHHHHCCCCEEHEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424