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The map label for this gene is nopJ

Identifier: 16519844

GI number: 16519844

Start: 345159

End: 345941

Strand: Direct

Name: nopJ

Synonym: NGR_a02610

Alternate gene names: NA

Gene position: 345159-345941 (Clockwise)

Preceding gene: 16519850

Following gene: 16519842

Centisome position: 64.38

GC content: 55.04

Gene sequence:

>783_bases
TTGCAATTATCTCGGCGGGCCGAGATTGGAAATCCGTCGAGCCGTAATCTCTCACCCCGAATCAACGAGAAAGTCGAGTT
GCTTGGCCAAGCACTTGAGCATGCCAGGCGGGCTGGGATGTCATCCAGTCTGATGGAATACGGTCGGCAGGTAGCACGCC
ATTTGTCTGCCAACGTACAGCCTGACGAGAAAATTTTATCGTTGGACATCAGGAATCTTCCTCTCTTGGCGGCCAGCTAC
AACCGGCGCTACCCGGACCTTGACCTTAGACACATGGACTCGCCTGCTAGATTTTTCGACGCGCTGAATGACCGCTCATC
GGACGGTGCCTGGCGTGCTGTCGTGCGGTTGGCGGACGGCGAGCAGCACCACGTCGCCGCTGATGTTCGGACACGCGCGG
GAGCAGCACCCACCATTATCGTGATGGAGGGAGCCAACTTTTACACCTTTGTCGCCTCGTATTTCAAATTGCGGGGGGAT
TCGTTTCGGCAGTTGGGAACGCAGGCGAAGTGGGCTTTTATTGAGGTTGGCGCGCAGAAGTCTGCGGCTGACTGCGTGAT
GTTCGGAGTACAATTTGCACTGGCCGCATATCGAGAATTACCGACGTTCGATGCCTGGCATGACAATCTACACCACCATG
GAACGATAGCCCACGAAGGTGACTACTCCAGTGACTACATGCCCCGACGCCATGCTGGAATATGCGCAAATAAGCCTTTT
TCATGGGGAGAGGTTCCTCCCAGCGACCTTTTACAAGCACTCTCACTCCAGCAGTGTAATTGA

Upstream 100 bases:

>100_bases
CCATCAGGACTATGGACACGGCCAAGAAACCTAGTTTGCTGCTTACGTTGAGGCCGCACGATCAAGTCCACCTCAACCCC
ATCTTGAAGGCCAGCATTCG

Downstream 100 bases:

>100_bases
CGAGATTGCAGGCCACCAACCTGGCATCAACGAGACAGACTTGAGCACCAGCAGGCGCGATCCCAAAACCGAATCATTAG
CCGAACGCCTCAAAGGCTTC

Product: nodulation protein NopJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MQLSRRAEIGNPSSRNLSPRINEKVELLGQALEHARRAGMSSSLMEYGRQVARHLSANVQPDEKILSLDIRNLPLLAASY
NRRYPDLDLRHMDSPARFFDALNDRSSDGAWRAVVRLADGEQHHVAADVRTRAGAAPTIIVMEGANFYTFVASYFKLRGD
SFRQLGTQAKWAFIEVGAQKSAADCVMFGVQFALAAYRELPTFDAWHDNLHHHGTIAHEGDYSSDYMPRRHAGICANKPF
SWGEVPPSDLLQALSLQQCN

Sequences:

>Translated_260_residues
MQLSRRAEIGNPSSRNLSPRINEKVELLGQALEHARRAGMSSSLMEYGRQVARHLSANVQPDEKILSLDIRNLPLLAASY
NRRYPDLDLRHMDSPARFFDALNDRSSDGAWRAVVRLADGEQHHVAADVRTRAGAAPTIIVMEGANFYTFVASYFKLRGD
SFRQLGTQAKWAFIEVGAQKSAADCVMFGVQFALAAYRELPTFDAWHDNLHHHGTIAHEGDYSSDYMPRRHAGICANKPF
SWGEVPPSDLLQALSLQQCN
>Mature_260_residues
MQLSRRAEIGNPSSRNLSPRINEKVELLGQALEHARRAGMSSSLMEYGRQVARHLSANVQPDEKILSLDIRNLPLLAASY
NRRYPDLDLRHMDSPARFFDALNDRSSDGAWRAVVRLADGEQHHVAADVRTRAGAAPTIIVMEGANFYTFVASYFKLRGD
SFRQLGTQAKWAFIEVGAQKSAADCVMFGVQFALAAYRELPTFDAWHDNLHHHGTIAHEGDYSSDYMPRRHAGICANKPF
SWGEVPPSDLLQALSLQQCN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4LO_RHISN (P55555)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443964.1
- GeneID:   962551
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a02610
- InterPro:   IPR005083

Pfam domain/function: PF03421 YopJ

EC number: NA

Molecular weight: Translated: 29079; Mature: 29079

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLSRRAEIGNPSSRNLSPRINEKVELLGQALEHARRAGMSSSLMEYGRQVARHLSANVQ
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
PDEKILSLDIRNLPLLAASYNRRYPDLDLRHMDSPARFFDALNDRSSDGAWRAVVRLADG
CCHHHEEECCCCCCEEEECCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCHHHHHEECCCC
EQHHVAADVRTRAGAAPTIIVMEGANFYTFVASYFKLRGDSFRQLGTQAKWAFIEVGAQK
CCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHCCCCCEEEEEECCCC
SAADCVMFGVQFALAAYRELPTFDAWHDNLHHHGTIAHEGDYSSDYMPRRHAGICANKPF
CHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC
SWGEVPPSDLLQALSLQQCN
CCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MQLSRRAEIGNPSSRNLSPRINEKVELLGQALEHARRAGMSSSLMEYGRQVARHLSANVQ
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
PDEKILSLDIRNLPLLAASYNRRYPDLDLRHMDSPARFFDALNDRSSDGAWRAVVRLADG
CCHHHEEECCCCCCEEEECCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCHHHHHEECCCC
EQHHVAADVRTRAGAAPTIIVMEGANFYTFVASYFKLRGDSFRQLGTQAKWAFIEVGAQK
CCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHCCCCCEEEEEECCCC
SAADCVMFGVQFALAAYRELPTFDAWHDNLHHHGTIAHEGDYSSDYMPRRHAGICANKPF
CHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC
SWGEVPPSDLLQALSLQQCN
CCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424