Click here to switch to the map view.

The map label for this gene is spsE

Identifier: 16519824

GI number: 16519824

Start: 368879

End: 369127

Strand: Reverse

Name: spsE

Synonym: NGR_a02810

Alternate gene names: NA

Gene position: 369127-368879 (Counterclockwise)

Preceding gene: 16519823

Following gene: 16519825

Centisome position: 68.85

GC content: 56.63

Gene sequence:

>249_bases
ATGACCGCTGCGTTTACCGTGCGTGTAAAAGATGAAACCGCGAGCAAGCTGGACCAGCTCGCTGAGAAGCTGGATCGGTC
CCGCTCTTATATGGCTGCAGAGGCCATCGAAGCTTTCGTTGAGCAACAGGAATGGCAGCTTGCCGAGATTGAAGCCGGGT
TGACCGAGGCCGACCGGGGTGAGTTCGCCAGCGATGAAGATGTGGCGAAAGTCGTCAGGAAGTACGTCAAGTCTGCCCGC
CAATCATGA

Upstream 100 bases:

>100_bases
GATCAGTCGCGTAGCGGGATGCTTTGAAGAAGTGTTTTGAACCTTGACGCACCAGTGCGGTTCATCGATAATCAAAGTGA
ACCAAGGAAGGTTAGATCCC

Downstream 100 bases:

>100_bases
GTCGGAAGCGTATTCGTTGGACGCTGCGGGCGTTGCGGCGACTTGATGAGATCGGCGCGTATATCGAGAAAGACGATCCG
GATGCGGCCGCTCGCGTCGT

Product: transcription regulator; possibly involved in symbiotic plasmid stability

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 82; Mature: 81

Protein sequence:

>82_residues
MTAAFTVRVKDETASKLDQLAEKLDRSRSYMAAEAIEAFVEQQEWQLAEIEAGLTEADRGEFASDEDVAKVVRKYVKSAR
QS

Sequences:

>Translated_82_residues
MTAAFTVRVKDETASKLDQLAEKLDRSRSYMAAEAIEAFVEQQEWQLAEIEAGLTEADRGEFASDEDVAKVVRKYVKSAR
QS
>Mature_81_residues
TAAFTVRVKDETASKLDQLAEKLDRSRSYMAAEAIEAFVEQQEWQLAEIEAGLTEADRGEFASDEDVAKVVRKYVKSARQ
S

Specific function: Unknown

COG id: COG3905

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4KO_RHISN (P55533)

Other databases:

- EMBL:   U00090
- PIR:   T10869
- RefSeq:   NP_443944.1
- GeneID:   962553
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a02810
- HOGENOM:   HBG677503
- ProtClustDB:   CLSK505638
- InterPro:   IPR002145

Pfam domain/function: PF01402 RHH_1

EC number: NA

Molecular weight: Translated: 9214; Mature: 9083

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAAFTVRVKDETASKLDQLAEKLDRSRSYMAAEAIEAFVEQQEWQLAEIEAGLTEADRG
CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
EFASDEDVAKVVRKYVKSARQS
CCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TAAFTVRVKDETASKLDQLAEKLDRSRSYMAAEAIEAFVEQQEWQLAEIEAGLTEADRG
CCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
EFASDEDVAKVVRKYVKSARQS
CCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424