Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519822
GI number: 16519822
Start: 370103
End: 370456
Strand: Reverse
Name: Not Available
Synonym: NGR_a02830
Alternate gene names: NA
Gene position: 370456-370103 (Counterclockwise)
Preceding gene: 16519812
Following gene: 16519823
Centisome position: 69.09
GC content: 53.39
Gene sequence:
>354_bases GTGCCTTCGTCTGGGAGCGGGAAGGCGATTGGCCAGCTCTTTGAGAGCATGAGCGACAACTCTTTCACGTGCACTGTGGT AAATCGTGGCTACAAAGGCGGCCGTGATGCGCACATCACGGTTCACAACAGCAAGGGCAGCCGTCATCACTTCGGCGACA TCAACTACTCATGGCAATCCCATAGCGAGTCAAACACGTCAAACGGTCACGTCAAAGTCGACGCAGACGAGTACAACATG TTCCTCTCGCTGAACGATTTCATGAGCAGCGAGAAAAAACGCTATGACGCGAAACAGGTCGCCGACGTCCTCTGGCTCGA ATTCACCAATCAGGCAGGGATCGAATATGACTGA
Upstream 100 bases:
>100_bases CACGCAGCATTTGGAGCATCTCGGGTCCGGCCCGTTCGACGATGGCCACTCCGGCCAGCAGAGCTGGTCGTAGATGCAGC GGTAGGATCGGGCCTCGAGA
Downstream 100 bases:
>100_bases GGTGAAGCGTTTCCAATGTCTAAACTGCGGTCATCGCTTCGAGATTGACGTGTTGACGCCGGATGAGAAAAAGGAGGCAA GGAGGAAAGACGAGCCGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 117; Mature: 116
Protein sequence:
>117_residues MPSSGSGKAIGQLFESMSDNSFTCTVVNRGYKGGRDAHITVHNSKGSRHHFGDINYSWQSHSESNTSNGHVKVDADEYNM FLSLNDFMSSEKKRYDAKQVADVLWLEFTNQAGIEYD
Sequences:
>Translated_117_residues MPSSGSGKAIGQLFESMSDNSFTCTVVNRGYKGGRDAHITVHNSKGSRHHFGDINYSWQSHSESNTSNGHVKVDADEYNM FLSLNDFMSSEKKRYDAKQVADVLWLEFTNQAGIEYD >Mature_116_residues PSSGSGKAIGQLFESMSDNSFTCTVVNRGYKGGRDAHITVHNSKGSRHHFGDINYSWQSHSESNTSNGHVKVDADEYNMF LSLNDFMSSEKKRYDAKQVADVLWLEFTNQAGIEYD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4KM_RHISN (P55531)
Other databases:
- EMBL: U00090 - PIR: T10867 - RefSeq: NP_443942.1 - GeneID: 962349 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a02830
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13117; Mature: 12986
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSSGSGKAIGQLFESMSDNSFTCTVVNRGYKGGRDAHITVHNSKGSRHHFGDINYSWQS CCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC HSESNTSNGHVKVDADEYNMFLSLNDFMSSEKKRYDAKQVADVLWLEFTNQAGIEYD CCCCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHEEECCCCCCCCC >Mature Secondary Structure PSSGSGKAIGQLFESMSDNSFTCTVVNRGYKGGRDAHITVHNSKGSRHHFGDINYSWQS CCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC HSESNTSNGHVKVDADEYNMFLSLNDFMSSEKKRYDAKQVADVLWLEFTNQAGIEYD CCCCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424