Definition Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence.
Accession NC_000914
Length 536,165

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 16519820

GI number: 16519820

Start: 372056

End: 372994

Strand: Direct

Name: Not Available

Synonym: NGR_a02850

Alternate gene names: NA

Gene position: 372056-372994 (Clockwise)

Preceding gene: 16519821

Following gene: 16519949

Centisome position: 69.39

GC content: 58.04

Gene sequence:

>939_bases
GTGGCCAAGTACGACCATCTCGAGCTCGTCAGACTTCCAGAACAGCTTGAGCGACGCAAGCACGGCGGAGGTAGTCCGCC
GCCTGACAGAGATGGTCCCCGGCACAGTGCAAAGCTCAGAGACGAGCTAAACGCTGCCCGAGACGAGCAACGCCGGAGAC
GCAAGCCGGAATTCGTAAATCCAGCGCTGATCCTCCGCGTCCAGATGACGGGGGCACTGCAGGAAGCAGACTGGGAGCAA
CTCGGACTTACGGTCCTATCCAGCGACGCCGACCGAACGCTAGTGTTGTTCGCATCCAACGACGAGATGGCAGAGTTCAG
AACGCGGCTGGATGCCTACCAACGCGGCGCGCCCGCGGGCCAAAAGAACGCCCCCTACAACAATTTCATAGGCGGCATCG
AAACCATTGGGTCGGTCGAGCCACGTGACCGCATTGGGATTCGTTTCCGCGAAGACGGCCTTGTTGAAATGGCCGATTTC
CAAGATGGACAAGCCTATCTCATTGATATTGAGATATGGGATCTCGGTGAGCGACGTCTTCGCGAGCGCAAGCTCGACGA
CATCGTTCGCTACATCGAGGCGCGTGGGGCTGAGGTTTTCGACCAGTATGTCGGTCCTTCTATCACAATGCTCCGCGCCC
GCCTGAACGGCGTGTTGGTCCGGACTTTGTTGACGATCGAGGAAGTAGCATCTGTGGACCTTCCGCCAACGCCTGGCATT
GTCACGGCCGAAGCGATGGACATGGTCCTTGCTGAGGCCCCTCCCCTCAATACGGTCGACCAGACGGCGCCCGTTATAGG
CATTATAGATAGTGGCCTCAACGCTCATCCCTTCCTTGATGGGATCATTGCCGGCTGCGGGTTTCGGCAAAGTCCGGACA
GGATTTCCGGTAATCTCCGGACACAGTTTTCAGTAATTCCCGGACAGCGATTCCGCTAA

Upstream 100 bases:

>100_bases
CGCAAGCAAGTCCAGGAGCGGGATTTCAACCGTGCACTTCAGGACGAGGCGCGGCGGCGTGCCGGACAAGCCCGTCTTGC
ACCAATGATCTGAGGCCGCC

Downstream 100 bases:

>100_bases
ATCCCGGACAGTTTCCGGCGGCGGTTTGACGGGTTGGTTCGCGGCTGCGCCGTCTTGTTGGTTAGGCCTCTCACGACAAC
GTTGAGAGGGGCCGATGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MAKYDHLELVRLPEQLERRKHGGGSPPPDRDGPRHSAKLRDELNAARDEQRRRRKPEFVNPALILRVQMTGALQEADWEQ
LGLTVLSSDADRTLVLFASNDEMAEFRTRLDAYQRGAPAGQKNAPYNNFIGGIETIGSVEPRDRIGIRFREDGLVEMADF
QDGQAYLIDIEIWDLGERRLRERKLDDIVRYIEARGAEVFDQYVGPSITMLRARLNGVLVRTLLTIEEVASVDLPPTPGI
VTAEAMDMVLAEAPPLNTVDQTAPVIGIIDSGLNAHPFLDGIIAGCGFRQSPDRISGNLRTQFSVIPGQRFR

Sequences:

>Translated_312_residues
MAKYDHLELVRLPEQLERRKHGGGSPPPDRDGPRHSAKLRDELNAARDEQRRRRKPEFVNPALILRVQMTGALQEADWEQ
LGLTVLSSDADRTLVLFASNDEMAEFRTRLDAYQRGAPAGQKNAPYNNFIGGIETIGSVEPRDRIGIRFREDGLVEMADF
QDGQAYLIDIEIWDLGERRLRERKLDDIVRYIEARGAEVFDQYVGPSITMLRARLNGVLVRTLLTIEEVASVDLPPTPGI
VTAEAMDMVLAEAPPLNTVDQTAPVIGIIDSGLNAHPFLDGIIAGCGFRQSPDRISGNLRTQFSVIPGQRFR
>Mature_311_residues
AKYDHLELVRLPEQLERRKHGGGSPPPDRDGPRHSAKLRDELNAARDEQRRRRKPEFVNPALILRVQMTGALQEADWEQL
GLTVLSSDADRTLVLFASNDEMAEFRTRLDAYQRGAPAGQKNAPYNNFIGGIETIGSVEPRDRIGIRFREDGLVEMADFQ
DGQAYLIDIEIWDLGERRLRERKLDDIVRYIEARGAEVFDQYVGPSITMLRARLNGVLVRTLLTIEEVASVDLPPTPGIV
TAEAMDMVLAEAPPLNTVDQTAPVIGIIDSGLNAHPFLDGIIAGCGFRQSPDRISGNLRTQFSVIPGQRFR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4KK_RHISN (P55529)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443940.1
- GeneID:   962174
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a02850

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34892; Mature: 34761

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS00136 SUBTILASE_ASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKYDHLELVRLPEQLERRKHGGGSPPPDRDGPRHSAKLRDELNAARDEQRRRRKPEFVN
CCCCCCHHHHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PALILRVQMTGALQEADWEQLGLTVLSSDADRTLVLFASNDEMAEFRTRLDAYQRGAPAG
CEEEEEEEECCCHHHCCHHHHCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCC
QKNAPYNNFIGGIETIGSVEPRDRIGIRFREDGLVEMADFQDGQAYLIDIEIWDLGERRL
CCCCCHHHHCCHHHHHCCCCCCHHCCCEECCCCCEEEECCCCCCEEEEEEEEECCCHHHH
RERKLDDIVRYIEARGAEVFDQYVGPSITMLRARLNGVLVRTLLTIEEVASVDLPPTPGI
HHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
VTAEAMDMVLAEAPPLNTVDQTAPVIGIIDSGLNAHPFLDGIIAGCGFRQSPDRISGNLR
EEHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHCCCCE
TQFSVIPGQRFR
EEEEECCCCCCC
>Mature Secondary Structure 
AKYDHLELVRLPEQLERRKHGGGSPPPDRDGPRHSAKLRDELNAARDEQRRRRKPEFVN
CCCCCHHHHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PALILRVQMTGALQEADWEQLGLTVLSSDADRTLVLFASNDEMAEFRTRLDAYQRGAPAG
CEEEEEEEECCCHHHCCHHHHCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCC
QKNAPYNNFIGGIETIGSVEPRDRIGIRFREDGLVEMADFQDGQAYLIDIEIWDLGERRL
CCCCCHHHHCCHHHHHCCCCCCHHCCCEECCCCCEEEECCCCCCEEEEEEEEECCCHHHH
RERKLDDIVRYIEARGAEVFDQYVGPSITMLRARLNGVLVRTLLTIEEVASVDLPPTPGI
HHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
VTAEAMDMVLAEAPPLNTVDQTAPVIGIIDSGLNAHPFLDGIIAGCGFRQSPDRISGNLR
EEHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHCCCCE
TQFSVIPGQRFR
EEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424