| Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
|---|---|
| Accession | NC_000914 |
| Length | 536,165 |
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Identifier: 16519820
GI number: 16519820
Start: 372056
End: 372994
Strand: Direct
Name: Not Available
Synonym: NGR_a02850
Alternate gene names: NA
Gene position: 372056-372994 (Clockwise)
Preceding gene: 16519821
Following gene: 16519949
Centisome position: 69.39
GC content: 58.04
Gene sequence:
>939_bases GTGGCCAAGTACGACCATCTCGAGCTCGTCAGACTTCCAGAACAGCTTGAGCGACGCAAGCACGGCGGAGGTAGTCCGCC GCCTGACAGAGATGGTCCCCGGCACAGTGCAAAGCTCAGAGACGAGCTAAACGCTGCCCGAGACGAGCAACGCCGGAGAC GCAAGCCGGAATTCGTAAATCCAGCGCTGATCCTCCGCGTCCAGATGACGGGGGCACTGCAGGAAGCAGACTGGGAGCAA CTCGGACTTACGGTCCTATCCAGCGACGCCGACCGAACGCTAGTGTTGTTCGCATCCAACGACGAGATGGCAGAGTTCAG AACGCGGCTGGATGCCTACCAACGCGGCGCGCCCGCGGGCCAAAAGAACGCCCCCTACAACAATTTCATAGGCGGCATCG AAACCATTGGGTCGGTCGAGCCACGTGACCGCATTGGGATTCGTTTCCGCGAAGACGGCCTTGTTGAAATGGCCGATTTC CAAGATGGACAAGCCTATCTCATTGATATTGAGATATGGGATCTCGGTGAGCGACGTCTTCGCGAGCGCAAGCTCGACGA CATCGTTCGCTACATCGAGGCGCGTGGGGCTGAGGTTTTCGACCAGTATGTCGGTCCTTCTATCACAATGCTCCGCGCCC GCCTGAACGGCGTGTTGGTCCGGACTTTGTTGACGATCGAGGAAGTAGCATCTGTGGACCTTCCGCCAACGCCTGGCATT GTCACGGCCGAAGCGATGGACATGGTCCTTGCTGAGGCCCCTCCCCTCAATACGGTCGACCAGACGGCGCCCGTTATAGG CATTATAGATAGTGGCCTCAACGCTCATCCCTTCCTTGATGGGATCATTGCCGGCTGCGGGTTTCGGCAAAGTCCGGACA GGATTTCCGGTAATCTCCGGACACAGTTTTCAGTAATTCCCGGACAGCGATTCCGCTAA
Upstream 100 bases:
>100_bases CGCAAGCAAGTCCAGGAGCGGGATTTCAACCGTGCACTTCAGGACGAGGCGCGGCGGCGTGCCGGACAAGCCCGTCTTGC ACCAATGATCTGAGGCCGCC
Downstream 100 bases:
>100_bases ATCCCGGACAGTTTCCGGCGGCGGTTTGACGGGTTGGTTCGCGGCTGCGCCGTCTTGTTGGTTAGGCCTCTCACGACAAC GTTGAGAGGGGCCGATGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MAKYDHLELVRLPEQLERRKHGGGSPPPDRDGPRHSAKLRDELNAARDEQRRRRKPEFVNPALILRVQMTGALQEADWEQ LGLTVLSSDADRTLVLFASNDEMAEFRTRLDAYQRGAPAGQKNAPYNNFIGGIETIGSVEPRDRIGIRFREDGLVEMADF QDGQAYLIDIEIWDLGERRLRERKLDDIVRYIEARGAEVFDQYVGPSITMLRARLNGVLVRTLLTIEEVASVDLPPTPGI VTAEAMDMVLAEAPPLNTVDQTAPVIGIIDSGLNAHPFLDGIIAGCGFRQSPDRISGNLRTQFSVIPGQRFR
Sequences:
>Translated_312_residues MAKYDHLELVRLPEQLERRKHGGGSPPPDRDGPRHSAKLRDELNAARDEQRRRRKPEFVNPALILRVQMTGALQEADWEQ LGLTVLSSDADRTLVLFASNDEMAEFRTRLDAYQRGAPAGQKNAPYNNFIGGIETIGSVEPRDRIGIRFREDGLVEMADF QDGQAYLIDIEIWDLGERRLRERKLDDIVRYIEARGAEVFDQYVGPSITMLRARLNGVLVRTLLTIEEVASVDLPPTPGI VTAEAMDMVLAEAPPLNTVDQTAPVIGIIDSGLNAHPFLDGIIAGCGFRQSPDRISGNLRTQFSVIPGQRFR >Mature_311_residues AKYDHLELVRLPEQLERRKHGGGSPPPDRDGPRHSAKLRDELNAARDEQRRRRKPEFVNPALILRVQMTGALQEADWEQL GLTVLSSDADRTLVLFASNDEMAEFRTRLDAYQRGAPAGQKNAPYNNFIGGIETIGSVEPRDRIGIRFREDGLVEMADFQ DGQAYLIDIEIWDLGERRLRERKLDDIVRYIEARGAEVFDQYVGPSITMLRARLNGVLVRTLLTIEEVASVDLPPTPGIV TAEAMDMVLAEAPPLNTVDQTAPVIGIIDSGLNAHPFLDGIIAGCGFRQSPDRISGNLRTQFSVIPGQRFR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4KK_RHISN (P55529)
Other databases:
- EMBL: U00090 - RefSeq: NP_443940.1 - GeneID: 962174 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a02850
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34892; Mature: 34761
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: PS00136 SUBTILASE_ASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKYDHLELVRLPEQLERRKHGGGSPPPDRDGPRHSAKLRDELNAARDEQRRRRKPEFVN CCCCCCHHHHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC PALILRVQMTGALQEADWEQLGLTVLSSDADRTLVLFASNDEMAEFRTRLDAYQRGAPAG CEEEEEEEECCCHHHCCHHHHCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCC QKNAPYNNFIGGIETIGSVEPRDRIGIRFREDGLVEMADFQDGQAYLIDIEIWDLGERRL CCCCCHHHHCCHHHHHCCCCCCHHCCCEECCCCCEEEECCCCCCEEEEEEEEECCCHHHH RERKLDDIVRYIEARGAEVFDQYVGPSITMLRARLNGVLVRTLLTIEEVASVDLPPTPGI HHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE VTAEAMDMVLAEAPPLNTVDQTAPVIGIIDSGLNAHPFLDGIIAGCGFRQSPDRISGNLR EEHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHCCCCE TQFSVIPGQRFR EEEEECCCCCCC >Mature Secondary Structure AKYDHLELVRLPEQLERRKHGGGSPPPDRDGPRHSAKLRDELNAARDEQRRRRKPEFVN CCCCCHHHHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC PALILRVQMTGALQEADWEQLGLTVLSSDADRTLVLFASNDEMAEFRTRLDAYQRGAPAG CEEEEEEEECCCHHHCCHHHHCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCC QKNAPYNNFIGGIETIGSVEPRDRIGIRFREDGLVEMADFQDGQAYLIDIEIWDLGERRL CCCCCHHHHCCHHHHHCCCCCCHHCCCEECCCCCEEEECCCCCCEEEEEEEEECCCHHHH RERKLDDIVRYIEARGAEVFDQYVGPSITMLRARLNGVLVRTLLTIEEVASVDLPPTPGI HHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE VTAEAMDMVLAEAPPLNTVDQTAPVIGIIDSGLNAHPFLDGIIAGCGFRQSPDRISGNLR EEHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHCCCCE TQFSVIPGQRFR EEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424