| Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
|---|---|
| Accession | NC_000914 |
| Length | 536,165 |
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Identifier: 16519777
GI number: 16519777
Start: 420546
End: 422534
Strand: Direct
Name: Not Available
Synonym: NGR_a03290
Alternate gene names: NA
Gene position: 420546-422534 (Clockwise)
Preceding gene: 16519779
Following gene: 16519776
Centisome position: 78.44
GC content: 56.81
Gene sequence:
>1989_bases ATGGCTCACTCTTCGGACCTCGCCCTGTTCCGCCACCGCATCGCCGAGGCACTCCCTTCGGCCAATGTTCCAACCCTATT ACTCCTTCTGTATCAGTTCACGGGAAAAGAATACTGGCTCACCCCACCGTTTCTTCCCGTAAAGAGTGTCTGGGGCGACA ACGATTCAGGGGGCCTCGCGGCCGAATTACAGACGGAGATTCGTAATGCAGCACTGGACGCCATCATCTGTTGGCACAGC GGCGCACCAGTCACCAAGCAGGACCTGTCGGAAGAAGAGTTGATCCGCATGCTGACTGTGTCGGAGGCCGAGCCTATCCC GCCAGAATACGCTGACATGATGCTTCATAAGCTACGGAGATATGCAGGCGCCATTCCGGACCCCGTGTCCTTGCCGAAAG GATTTCGTGTACTCATCATCGGGGCGGGCATGTCCGGTGTCGCAGCGGCAATTCGGTTAAGACAATTGGGCATTTCCTAC ATCCAGGTCGAAAAGCAAGACAGCACCGGCGGGGTCTGGCACGCACATCACTATCCTGGCTGTGGAGTGGACACGCCGGG GCATCTCTACTCGTACACTTTTGCCAGTGGCAACTGGAGCACGTTCTTCCCGTTGCAAAAGGAAATCGACGACTATTTCA ACCGTGTTGCCCGCGACTTTGGGATCGAGAGTTCCATCCGCTACGGCACGGAGTGCCTGGTCACCCGCTATGACGAAGAG AGCCTAACTTGGCACTCCCGGTTACGCCTGCCCAACGGCACGGAGGAAACCCTCGTGACCAATGTGGTCCTCTCGGCCGT GGGGGGCTTCACCACGCCGAAATGGCCCAACCTTTCGGGCCTGCGCAACTTCGACGGCCCGGTGGTGCACACCTCGAAAT GGGATCCAGAAGTCGCGCTCGACGGTAAACGTGTGGCCGTGATTGGCAATGGCGCTTCGGCAATGCAGGTTGTTCCCGCC ATCGCAGATCGGGTGGGTGCGTTGACAATCTTCCAACGCTCACGTCAATGGGTGGCGCCCTTCCCGAAATTTCAAAAACC GGTCCCGGAACCGATGCAGTTCTTGTTCCGCGAGGTGCCACACTATGAATGGCTGTACAGGCTCCGCCTGAGTTGGATTT ACGACAGTGAAGTGCATGAGGCCCTGCAGAAGGATCCGGCCTGGCCGCATCCGGACCGTTCCGTGAATGCGGTTAACGAC CGCGACCGCGAGGCTTACACACAATACATCGAGGGACAGCTGGCGGGGCGCCCTGATCTTATCGCCAAGGTCATCCCGTC GTACCCTCCATTCGGCAAGCGGATGCTCCTGGACAACGGCTGGTACAGAACCCTACTAAAGCCGCATGTTACGCTGGTAG ACGGAGCTGCTGCGCGTGTTGAGGGCAGGTCGATCCATGCGATTGATGATGAAACGCATGAGGCAGACCTTATTATCGTC GCCTCAGGCTACGATACGACACGATATCTACTTCCGGTTGAGGTAATCGGACGCAATGGTCGGACGGTACGCGACGTCTG GGACGATGATGACTGTCAGGCTTATCTTGGCACCGTTGTGGCGGGGTTCCCAAATTTCTTCATGCTCTATGGTCCCAATA CGGCGCTCGGCCATCGCGGCAGCTTCATCTTCACGATCGAGAGCCAAATCGATTATGTACTAAGTGTTCTGCGCCAGATG GGCGAGAAGAGACTTGTCGAAGTAGAATGCCGGCAAGATATATATCAACATTACAACCGGAAAATCCAACAAATGCACCA GCAGATGATCTGGAGCCATGAGGGTATGTCCACCTTTTTCCGCAACGACCGAGGCCGAATCGTGACAAACAGCCCTTGGC GTCTGGTCGATTATTGGAACTTGCTGAAGGAGGCGGATCTCGATGACTACCGTACCATGCCGCAAGTTGATTCCCGATTA GAGACTTCGGGTGTACCGCGAGAGGGCGTTCAACGCCCCGGCTCGCGCCTCCGGCGTCGACCTTCTTGA
Upstream 100 bases:
>100_bases ATCTTCCCTAATGCCGATTGCCGCAACCACGCCGAAGCCGAGGCAGTAAACTTAGCGTCTGGCGGGGGAGTGGATATATG CAACAGGAGGAACTTAAATC
Downstream 100 bases:
>100_bases CGCGGCGGCCTACGGTCAGCAATCAAATGGCGACCGCCGGGGTGAGCCCCGCTTCGGCGGTGATATCGAGCGTCTGATCG GCACCCAGACGGGAAAAGTC
Product: FAD-binding monoxygenase of 75.1 kDa
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 662; Mature: 661
Protein sequence:
>662_residues MAHSSDLALFRHRIAEALPSANVPTLLLLLYQFTGKEYWLTPPFLPVKSVWGDNDSGGLAAELQTEIRNAALDAIICWHS GAPVTKQDLSEEELIRMLTVSEAEPIPPEYADMMLHKLRRYAGAIPDPVSLPKGFRVLIIGAGMSGVAAAIRLRQLGISY IQVEKQDSTGGVWHAHHYPGCGVDTPGHLYSYTFASGNWSTFFPLQKEIDDYFNRVARDFGIESSIRYGTECLVTRYDEE SLTWHSRLRLPNGTEETLVTNVVLSAVGGFTTPKWPNLSGLRNFDGPVVHTSKWDPEVALDGKRVAVIGNGASAMQVVPA IADRVGALTIFQRSRQWVAPFPKFQKPVPEPMQFLFREVPHYEWLYRLRLSWIYDSEVHEALQKDPAWPHPDRSVNAVND RDREAYTQYIEGQLAGRPDLIAKVIPSYPPFGKRMLLDNGWYRTLLKPHVTLVDGAAARVEGRSIHAIDDETHEADLIIV ASGYDTTRYLLPVEVIGRNGRTVRDVWDDDDCQAYLGTVVAGFPNFFMLYGPNTALGHRGSFIFTIESQIDYVLSVLRQM GEKRLVEVECRQDIYQHYNRKIQQMHQQMIWSHEGMSTFFRNDRGRIVTNSPWRLVDYWNLLKEADLDDYRTMPQVDSRL ETSGVPREGVQRPGSRLRRRPS
Sequences:
>Translated_662_residues MAHSSDLALFRHRIAEALPSANVPTLLLLLYQFTGKEYWLTPPFLPVKSVWGDNDSGGLAAELQTEIRNAALDAIICWHS GAPVTKQDLSEEELIRMLTVSEAEPIPPEYADMMLHKLRRYAGAIPDPVSLPKGFRVLIIGAGMSGVAAAIRLRQLGISY IQVEKQDSTGGVWHAHHYPGCGVDTPGHLYSYTFASGNWSTFFPLQKEIDDYFNRVARDFGIESSIRYGTECLVTRYDEE SLTWHSRLRLPNGTEETLVTNVVLSAVGGFTTPKWPNLSGLRNFDGPVVHTSKWDPEVALDGKRVAVIGNGASAMQVVPA IADRVGALTIFQRSRQWVAPFPKFQKPVPEPMQFLFREVPHYEWLYRLRLSWIYDSEVHEALQKDPAWPHPDRSVNAVND RDREAYTQYIEGQLAGRPDLIAKVIPSYPPFGKRMLLDNGWYRTLLKPHVTLVDGAAARVEGRSIHAIDDETHEADLIIV ASGYDTTRYLLPVEVIGRNGRTVRDVWDDDDCQAYLGTVVAGFPNFFMLYGPNTALGHRGSFIFTIESQIDYVLSVLRQM GEKRLVEVECRQDIYQHYNRKIQQMHQQMIWSHEGMSTFFRNDRGRIVTNSPWRLVDYWNLLKEADLDDYRTMPQVDSRL ETSGVPREGVQRPGSRLRRRPS >Mature_661_residues AHSSDLALFRHRIAEALPSANVPTLLLLLYQFTGKEYWLTPPFLPVKSVWGDNDSGGLAAELQTEIRNAALDAIICWHSG APVTKQDLSEEELIRMLTVSEAEPIPPEYADMMLHKLRRYAGAIPDPVSLPKGFRVLIIGAGMSGVAAAIRLRQLGISYI QVEKQDSTGGVWHAHHYPGCGVDTPGHLYSYTFASGNWSTFFPLQKEIDDYFNRVARDFGIESSIRYGTECLVTRYDEES LTWHSRLRLPNGTEETLVTNVVLSAVGGFTTPKWPNLSGLRNFDGPVVHTSKWDPEVALDGKRVAVIGNGASAMQVVPAI ADRVGALTIFQRSRQWVAPFPKFQKPVPEPMQFLFREVPHYEWLYRLRLSWIYDSEVHEALQKDPAWPHPDRSVNAVNDR DREAYTQYIEGQLAGRPDLIAKVIPSYPPFGKRMLLDNGWYRTLLKPHVTLVDGAAARVEGRSIHAIDDETHEADLIIVA SGYDTTRYLLPVEVIGRNGRTVRDVWDDDDCQAYLGTVVAGFPNFFMLYGPNTALGHRGSFIFTIESQIDYVLSVLRQMG EKRLVEVECRQDIYQHYNRKIQQMHQQMIWSHEGMSTFFRNDRGRIVTNSPWRLVDYWNLLKEADLDDYRTMPQVDSRLE TSGVPREGVQRPGSRLRRRPS
Specific function: Unknown
COG id: COG2072
COG function: function code P; Predicted flavoprotein involved in K+ transport
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FAD-binding monooxygenase family
Homologues:
Organism=Caenorhabditis elegans, GI25145785, Length=215, Percent_Identity=26.5116279069767, Blast_Score=72, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4ID_RHISN (P55487)
Other databases:
- EMBL: U00090 - RefSeq: NP_443897.1 - ProteinModelPortal: P55487 - SMR: P55487 - GeneID: 962598 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a03290 - HOGENOM: HBG655952 - InterPro: IPR013027 - InterPro: IPR020946 - InterPro: IPR016040 - Gene3D: G3DSA:3.40.50.720 - PRINTS: PR00368
Pfam domain/function: PF00743 FMO-like
EC number: NA
Molecular weight: Translated: 75110; Mature: 74979
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: NA
Important sites: BINDING 145-145 BINDING 164-164 BINDING 173-173 BINDING 184-184 BINDING 190-190
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHSSDLALFRHRIAEALPSANVPTLLLLLYQFTGKEYWLTPPFLPVKSVWGDNDSGGLA CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCCCCH AELQTEIRNAALDAIICWHSGAPVTKQDLSEEELIRMLTVSEAEPIPPEYADMMLHKLRR HHHHHHHHHHHHHEEEEECCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH YAGAIPDPVSLPKGFRVLIIGAGMSGVAAAIRLRQLGISYIQVEKQDSTGGVWHAHHYPG HHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEECCCCCCCEEECCCCCC CGVDTPGHLYSYTFASGNWSTFFPLQKEIDDYFNRVARDFGIESSIRYGTECLVTRYDEE CCCCCCCCEEEEEEECCCCEEECCHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEECCCC SLTWHSRLRLPNGTEETLVTNVVLSAVGGFTTPKWPNLSGLRNFDGPVVHTSKWDPEVAL CCCHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEE DGKRVAVIGNGASAMQVVPAIADRVGALTIFQRSRQWVAPFPKFQKPVPEPMQFLFREVP CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHCC HYEWLYRLRLSWIYDSEVHEALQKDPAWPHPDRSVNAVNDRDREAYTQYIEGQLAGRPDL CHHHHHHHHHHHEECHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHH IAKVIPSYPPFGKRMLLDNGWYRTLLKPHVTLVDGAAARVEGRSIHAIDDETHEADLIIV HHHHHCCCCCCCCEEEECCCHHHHHHCCCEEEECCCHHEECCCEEEECCCCCCCCCEEEE ASGYDTTRYLLPVEVIGRNGRTVRDVWDDDDCQAYLGTVVAGFPNFFMLYGPNTALGHRG ECCCCCEEEEEEEEEECCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCC SFIFTIESQIDYVLSVLRQMGEKRLVEVECRQDIYQHYNRKIQQMHQQMIWSHEGMSTFF CEEEEEHHHHHHHHHHHHHHCHHCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH RNDRGRIVTNSPWRLVDYWNLLKEADLDDYRTMPQVDSRLETSGVPREGVQRPGSRLRRR HCCCCCEEECCCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCCCCHHHHHCCHHHHCCC PS CC >Mature Secondary Structure AHSSDLALFRHRIAEALPSANVPTLLLLLYQFTGKEYWLTPPFLPVKSVWGDNDSGGLA CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCCCCH AELQTEIRNAALDAIICWHSGAPVTKQDLSEEELIRMLTVSEAEPIPPEYADMMLHKLRR HHHHHHHHHHHHHEEEEECCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH YAGAIPDPVSLPKGFRVLIIGAGMSGVAAAIRLRQLGISYIQVEKQDSTGGVWHAHHYPG HHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEECCCCCCCEEECCCCCC CGVDTPGHLYSYTFASGNWSTFFPLQKEIDDYFNRVARDFGIESSIRYGTECLVTRYDEE CCCCCCCCEEEEEEECCCCEEECCHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEECCCC SLTWHSRLRLPNGTEETLVTNVVLSAVGGFTTPKWPNLSGLRNFDGPVVHTSKWDPEVAL CCCHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEE DGKRVAVIGNGASAMQVVPAIADRVGALTIFQRSRQWVAPFPKFQKPVPEPMQFLFREVP CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHCC HYEWLYRLRLSWIYDSEVHEALQKDPAWPHPDRSVNAVNDRDREAYTQYIEGQLAGRPDL CHHHHHHHHHHHEECHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHH IAKVIPSYPPFGKRMLLDNGWYRTLLKPHVTLVDGAAARVEGRSIHAIDDETHEADLIIV HHHHHCCCCCCCCEEEECCCHHHHHHCCCEEEECCCHHEECCCEEEECCCCCCCCCEEEE ASGYDTTRYLLPVEVIGRNGRTVRDVWDDDDCQAYLGTVVAGFPNFFMLYGPNTALGHRG ECCCCCEEEEEEEEEECCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCC SFIFTIESQIDYVLSVLRQMGEKRLVEVECRQDIYQHYNRKIQQMHQQMIWSHEGMSTFF CEEEEEHHHHHHHHHHHHHHCHHCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH RNDRGRIVTNSPWRLVDYWNLLKEADLDDYRTMPQVDSRLETSGVPREGVQRPGSRLRRR HCCCCCEEECCCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCCCCHHHHHCCHHHHCCC PS CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424