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Identifier: 16519756

GI number: 16519756

Start: 445871

End: 447022

Strand: Reverse

Name: Not Available

Synonym: NGR_a03500

Alternate gene names: NA

Gene position: 447022-445871 (Counterclockwise)

Preceding gene: 16519753

Following gene: 16519767

Centisome position: 83.37

GC content: 42.62

Gene sequence:

>1152_bases
ATGGATCAAACCCTTAGTCGCCGCTTGTTTCTATGGCACAACCCGCAGACTGATAACCAGTGTAGAAATGAAAGACACAT
GATTCATACGTCAAAAATTTACCGTGAAATCAACCGTATCGGCGTGCAAATCAAGGGGCTCCCCGACTATTGGATGGGCC
AGGCTAGAAGGATCAGTTATGATCGGGTTGGGTCGGCAGGAAACACGATAACGGAAGGTAGAAAACCAGTCTCGGCGGAC
ATGGCTATTTTGCTCATTTACCAACCACGTGGGCTTCTAGAGTCGCTTTTTTTACAATTAGAGCACCTGCTCTCGAAAGG
ACTGGGCGTCGTTATCGTCAGCAACCGCAAGGTTTTGGAGCACGATCGCAATCGGTTGAGTGAATATTGCCATCTGATCA
TTGAACGTAAGAATATTGGCTATGATTTTGGCGGCTATCGAGATGGAATTCTCGCGCTTCATAAGCGTTCAATTCATCCT
AAGAGCCTCTTTGTGATGAATGATAGTGTATGGTTTCCCATACGGAAAGACTGTGATCTTATTGATAGGTGTCGCGAATC
TAGGTCAGATATAGTAGGCGTTTTTTATAACAATAAAAGCAAGTTCCCCAAGAACCATCATCTACAATCATATTTTTATC
GTTTCGGTGAAAAGGTTGTCTCTGATAGTCGCTTTCTAGCGTATTGGCGTAAAATACCAATGTACAATGACAAACGCAAT
GTCATTAGGAATCTTGAAATAAAATTAACCAAAAATTTTCAGTTGATGGGCTTCGGCATCAGCTCTCTTTACGCGCCTGA
GGATATATTAAAGGCGTTTAAAAATATCGAAGTTCGAAATATCCGTCCCGTCCTGGATTACTATATCTCCGCGTTGGGAT
ATGACCAGAATACGTTCTGGAGCGCGTATAAAAATGAGTCACCAAAAGGAGGTGACACCCATGCATTACCGATAGACGTT
CCTAATAGCCGAGTTTTCTTCCATTTTCTTGACGCTCACCCAGAGATTCTCATTCGCAAGTTAAACTCTCCAATCATTAA
AAAGAATCGCGATAAACGCTTTGTCGCACAACGAAAAGCGATAATTGAGGGAGGGTTTCTTAAAGAGATTGACGCCGTCA
TTCAAAAAGAATTGATCAATTGGGATAGGTAG

Upstream 100 bases:

>100_bases
CTTCGGTGGCAGCCTAAATGACCCGTGTGGCGTTCAAATTGCAAGACACATGAACCTGCTTGTGGACACAATCATTTACT
AAGGACAATTCCACAGTGCT

Downstream 100 bases:

>100_bases
TTGATATTGTATCCAGGTCGTCGGAAGCGTGAATAATCACACTATCAAATCAGCCACGTAGATTAAGGCGCTGGTTATGC
CCCTTAGAGCAGCTGGAACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MDQTLSRRLFLWHNPQTDNQCRNERHMIHTSKIYREINRIGVQIKGLPDYWMGQARRISYDRVGSAGNTITEGRKPVSAD
MAILLIYQPRGLLESLFLQLEHLLSKGLGVVIVSNRKVLEHDRNRLSEYCHLIIERKNIGYDFGGYRDGILALHKRSIHP
KSLFVMNDSVWFPIRKDCDLIDRCRESRSDIVGVFYNNKSKFPKNHHLQSYFYRFGEKVVSDSRFLAYWRKIPMYNDKRN
VIRNLEIKLTKNFQLMGFGISSLYAPEDILKAFKNIEVRNIRPVLDYYISALGYDQNTFWSAYKNESPKGGDTHALPIDV
PNSRVFFHFLDAHPEILIRKLNSPIIKKNRDKRFVAQRKAIIEGGFLKEIDAVIQKELINWDR

Sequences:

>Translated_383_residues
MDQTLSRRLFLWHNPQTDNQCRNERHMIHTSKIYREINRIGVQIKGLPDYWMGQARRISYDRVGSAGNTITEGRKPVSAD
MAILLIYQPRGLLESLFLQLEHLLSKGLGVVIVSNRKVLEHDRNRLSEYCHLIIERKNIGYDFGGYRDGILALHKRSIHP
KSLFVMNDSVWFPIRKDCDLIDRCRESRSDIVGVFYNNKSKFPKNHHLQSYFYRFGEKVVSDSRFLAYWRKIPMYNDKRN
VIRNLEIKLTKNFQLMGFGISSLYAPEDILKAFKNIEVRNIRPVLDYYISALGYDQNTFWSAYKNESPKGGDTHALPIDV
PNSRVFFHFLDAHPEILIRKLNSPIIKKNRDKRFVAQRKAIIEGGFLKEIDAVIQKELINWDR
>Mature_383_residues
MDQTLSRRLFLWHNPQTDNQCRNERHMIHTSKIYREINRIGVQIKGLPDYWMGQARRISYDRVGSAGNTITEGRKPVSAD
MAILLIYQPRGLLESLFLQLEHLLSKGLGVVIVSNRKVLEHDRNRLSEYCHLIIERKNIGYDFGGYRDGILALHKRSIHP
KSLFVMNDSVWFPIRKDCDLIDRCRESRSDIVGVFYNNKSKFPKNHHLQSYFYRFGEKVVSDSRFLAYWRKIPMYNDKRN
VIRNLEIKLTKNFQLMGFGISSLYAPEDILKAFKNIEVRNIRPVLDYYISALGYDQNTFWSAYKNESPKGGDTHALPIDV
PNSRVFFHFLDAHPEILIRKLNSPIIKKNRDKRFVAQRKAIIEGGFLKEIDAVIQKELINWDR

Specific function: Could have an enzymatic function

COG id: COG3754

COG function: function code M; Lipopolysaccharide biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To V.anguillarum virulence protein virA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4GN_RHISN (P55470)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443876.1
- GeneID:   962168
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a03500
- ProtClustDB:   CLSK516086
- InterPro:   IPR007739

Pfam domain/function: PF05045 RgpF

EC number: NA

Molecular weight: Translated: 44976; Mature: 44976

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQTLSRRLFLWHNPQTDNQCRNERHMIHTSKIYREINRIGVQIKGLPDYWMGQARRISY
CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHCCCCCCCCH
DRVGSAGNTITEGRKPVSADMAILLIYQPRGLLESLFLQLEHLLSKGLGVVIVSNRKVLE
HHCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHH
HDRNRLSEYCHLIIERKNIGYDFGGYRDGILALHKRSIHPKSLFVMNDSVWFPIRKDCDL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCEEECCCCCCHH
IDRCRESRSDIVGVFYNNKSKFPKNHHLQSYFYRFGEKVVSDSRFLAYWRKIPMYNDKRN
HHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHH
VIRNLEIKLTKNFQLMGFGISSLYAPEDILKAFKNIEVRNIRPVLDYYISALGYDQNTFW
HHHCEEEEEECCEEEEEECHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHH
SAYKNESPKGGDTHALPIDVPNSRVFFHFLDAHPEILIRKLNSPIIKKNRDKRFVAQRKA
HHHCCCCCCCCCCCEEEEECCCCEEEEEEECCCHHHHHHHHCCCHHCCCCCHHHHHHHHH
IIEGGFLKEIDAVIQKELINWDR
HHCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDQTLSRRLFLWHNPQTDNQCRNERHMIHTSKIYREINRIGVQIKGLPDYWMGQARRISY
CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHCCCCCCCCH
DRVGSAGNTITEGRKPVSADMAILLIYQPRGLLESLFLQLEHLLSKGLGVVIVSNRKVLE
HHCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHH
HDRNRLSEYCHLIIERKNIGYDFGGYRDGILALHKRSIHPKSLFVMNDSVWFPIRKDCDL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCEEECCCCCCHH
IDRCRESRSDIVGVFYNNKSKFPKNHHLQSYFYRFGEKVVSDSRFLAYWRKIPMYNDKRN
HHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHH
VIRNLEIKLTKNFQLMGFGISSLYAPEDILKAFKNIEVRNIRPVLDYYISALGYDQNTFW
HHHCEEEEEECCEEEEEECHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHH
SAYKNESPKGGDTHALPIDVPNSRVFFHFLDAHPEILIRKLNSPIIKKNRDKRFVAQRKA
HHHCCCCCCCCCCCEEEEECCCCEEEEEEECCCHHHHHHHHCCCHHCCCCCHHHHHHHHH
IIEGGFLKEIDAVIQKELINWDR
HHCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424