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The map label for this gene is trbF

Identifier: 16519693

GI number: 16519693

Start: 527891

End: 528553

Strand: Reverse

Name: trbF

Synonym: NGR_a04130

Alternate gene names: 16519693

Gene position: 528553-527891 (Counterclockwise)

Preceding gene: 16519692

Following gene: 16519694

Centisome position: 98.58

GC content: 59.58

Gene sequence:

>663_bases
ATGGCAGCGAACCGCGCCCCCGAAAACCCCTATCTTGCCGCGCGGCAGGAATGGACGGAACGATACGGATCCTATGTGCG
AGCCGCCGCGGCATGGCGCACAGTCGGCATTCTGGGCCTGGCCATGGCCGTGATCGGTTTCGGATATGCTATGTATCTCA
GCACCGAGGTCAAGCTCGTGCCTTACATCGTCCAGGTCGACAAGCTTGGCACGTCGGTCACGACCGGTTTCCCCGAACAG
ATTGAATATGCGGATGTGCGGGTAGTGCGCGCCACGCTCGGCAATTTCGTGACCAGCTTCCGTTCGATCACGCCGGACGC
CGCGGTGCAGAAACAATATATCGACCGCACCTACGTGCTCCTTCGGACCTCCGATCCGTCGACGGAGAAGATCAACGCCT
GGTTCCGAGGCAATTCGCCATTCGAGAAGGCAAAAACCGCAACGGTCGCGATCGAAGTCAACAACATCGTGGCGCTCTCA
AACCAGACCTATCAGATCGACTGGACCGAATACGAACGGGACCGCAAGGGCAAGGAGATCGGCACGCGCCGGTTCCGGGG
CATCGCGACGGTGACACTCACCGCGCCGCAGGACGAGGCAACCATCCGCCTCAATCCAATCGGCCTTTATGTCAGGGATT
TTGACTGGACAGCGCAGCTTTAA

Upstream 100 bases:

>100_bases
GCCTCGCCAACGCCAAGCTCGATGAGAGCCGGGGCGGTCATAGCGGGCACAAGCCACCTCCCGAACGCAAAGACTAACAG
CAATCAGAAAGTGATAGACG

Downstream 100 bases:

>100_bases
GGGCAGGGGAATTCTCAATGCACAGAACCGGATTGATCGCAGCCGCCGGCTGCCTGGCAACACTCGTCTTTGCGAGCGCC
GCTGAAGCGCAGAGCATGAC

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MAANRAPENPYLAARQEWTERYGSYVRAAAAWRTVGILGLAMAVIGFGYAMYLSTEVKLVPYIVQVDKLGTSVTTGFPEQ
IEYADVRVVRATLGNFVTSFRSITPDAAVQKQYIDRTYVLLRTSDPSTEKINAWFRGNSPFEKAKTATVAIEVNNIVALS
NQTYQIDWTEYERDRKGKEIGTRRFRGIATVTLTAPQDEATIRLNPIGLYVRDFDWTAQL

Sequences:

>Translated_220_residues
MAANRAPENPYLAARQEWTERYGSYVRAAAAWRTVGILGLAMAVIGFGYAMYLSTEVKLVPYIVQVDKLGTSVTTGFPEQ
IEYADVRVVRATLGNFVTSFRSITPDAAVQKQYIDRTYVLLRTSDPSTEKINAWFRGNSPFEKAKTATVAIEVNNIVALS
NQTYQIDWTEYERDRKGKEIGTRRFRGIATVTLTAPQDEATIRLNPIGLYVRDFDWTAQL
>Mature_219_residues
AANRAPENPYLAARQEWTERYGSYVRAAAAWRTVGILGLAMAVIGFGYAMYLSTEVKLVPYIVQVDKLGTSVTTGFPEQI
EYADVRVVRATLGNFVTSFRSITPDAAVQKQYIDRTYVLLRTSDPSTEKINAWFRGNSPFEKAKTATVAIEVNNIVALSN
QTYQIDWTEYERDRKGKEIGTRRFRGIATVTLTAPQDEATIRLNPIGLYVRDFDWTAQL

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRBF_RHISN (P55403)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443813.1
- ProteinModelPortal:   P55403
- GeneID:   962590
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a04130
- HOGENOM:   HBG519621
- ProtClustDB:   PRK13836
- GO:   GO:0000746
- InterPro:   IPR007430

Pfam domain/function: PF04335 VirB8

EC number: NA

Molecular weight: Translated: 24777; Mature: 24646

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb0123e8)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAANRAPENPYLAARQEWTERYGSYVRAAAAWRTVGILGLAMAVIGFGYAMYLSTEVKLV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEE
PYIVQVDKLGTSVTTGFPEQIEYADVRVVRATLGNFVTSFRSITPDAAVQKQYIDRTYVL
EEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCEEEEE
LRTSDPSTEKINAWFRGNSPFEKAKTATVAIEVNNIVALSNQTYQIDWTEYERDRKGKEI
EECCCCCCCEEEEEECCCCCHHHCCEEEEEEEECCEEEECCCEEEEECHHHHHHCCCHHH
GTRRFRGIATVTLTAPQDEATIRLNPIGLYVRDFDWTAQL
HHHHHCCEEEEEEECCCCCCEEEEEEEEEEEEECCEEECH
>Mature Secondary Structure 
AANRAPENPYLAARQEWTERYGSYVRAAAAWRTVGILGLAMAVIGFGYAMYLSTEVKLV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEE
PYIVQVDKLGTSVTTGFPEQIEYADVRVVRATLGNFVTSFRSITPDAAVQKQYIDRTYVL
EEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCEEEEE
LRTSDPSTEKINAWFRGNSPFEKAKTATVAIEVNNIVALSNQTYQIDWTEYERDRKGKEI
EECCCCCCCEEEEEECCCCCHHHCCEEEEEEEECCEEEECCCEEEEECHHHHHHCCCHHH
GTRRFRGIATVTLTAPQDEATIRLNPIGLYVRDFDWTAQL
HHHHHCCEEEEEEECCCCCCEEEEEEEEEEEEECCEEECH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424