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Identifier: 16519675

GI number: 16519675

Start: 12823

End: 14376

Strand: Direct

Name: Not Available

Synonym: NGR_a00110

Alternate gene names: NA

Gene position: 12823-14376 (Clockwise)

Preceding gene: 16519676

Following gene: 16519674

Centisome position: 2.39

GC content: 56.5

Gene sequence:

>1554_bases
ATGAAATTTCTGGAACGATCGCTTGAGGTCGATCATATCCATGAGCCGGAACTTGAGTTTGCCTTCGGTCAGAAGAGCGC
GCACCCAAAGGACGGCCTCCACCTTTACGGACCCCATCTCAAGGGGAAAAAGGCGAAAGAAATCCGCGTCGGTGTCATCG
GCACAAGTGAAGGCATCGGTCACTTCCGGACGTGGAGCCGCGAGCTACAATCCATTGTCAAGGTGCCCCCGCCCGGGAAG
GGAGAAAAGGCGAACCGGCTGCACCTCGCGAACTTCCCGGGATTGGAAGAGACCTTTGGAATTTCCTACGACCCAGACGA
GCTCAGCGCATTATCGATCCCGCTCGCGGATATCGATCGCGCGACGCGGGTGACAAACCAGCACGAAGCAGTGGACAAGG
TCGCGAAGCTCTATATCGAGCGTGTAAACAAACATCTCCACAACGAGGAGCGCGCGGTAGACATCTGGGTGCTGGTGCTT
CCTGAGATCGTCTATGAAAGGTGCCGACCAAATTCTAAGCGCACTGGTCTGCCAACGGAGAAAGGGGATTTCGCCAAGAA
GCAGAAGAAGCGCGAAAGCCTGCCGCTCTTGGCAGGTATTATCGATCAAAGTGGTGAGACCATTTTTGACGACGTTCCGG
ATTTTCATCGGCGCATCAAAGCCGATTTCTTGAACATCGCGCCGACGCAGCTCATTCGAGAAACCACGCTTGCGCCAGGC
GCGTTTCTCAATACGGCAGGTTACCCGACCCGCAAGACGCAGGATCGTGCCACGGTTGCCTGGAATCTCGGCACTGGTCT
GTACTATAAGACACAGCCGCGCCCACCGTGGCGGTTATCGACGATCCGGCCTGGCGTTTGCTACCTCGGCATGGTCTACA
AGAGCCTGCCCAATGATCCCGATGGCCACGCGTGCTGCGCGGCGCAAATGTTTCTGAACGAGGGCGACGGTGTCGTTTTC
CGTGGTGCAAACGGCCCCTGGAAGACCGGGGACTACGACTATCATTTGAAGGCTCCCGCAGCCAAAGACCTCCTGAAGCT
CGTTCTTGATAGCTATGTCGATACCCACGGCGAGGCGCCTAAGGAGCTCTTCATCCATGGTCAGACCTACTTCAACGATG
AGGAATGGGCCGCGTTTGCCGATGCGGCGCCGAAGGGGACAAATGTCGTTGGCGTGCGGATTCGCCCAACCGGTGGCGAA
ATGAAGCTCTTCCGCGATGGAGACTATCCTGTGTTGCGCGGCACAGCCTTGATCCTCGATGCGCAGACAGCCTACATTTG
GACGACCGGATACGTTCCGCAGCTTGATACCTATATCGGCCCGGAAACCCCAAATCCGCTACATGTCACCGTGACGCGGA
GCAAGGATGCCAAGCCCGAGATTCGTGACGTGCTGTCCGACATCATGGGCCTGACCAAGATCAACTACAATTCTTGCAAC
TTCAACGATGGCCTTCCGGTCACCGTGCGGTTCGCTCGAATGGTCGGCGATGTCCTGACGATGGGATCGGCGATCAAAGG
CGAGAAGAAACAGCCGTTTAAGTTCTACATATAG

Upstream 100 bases:

>100_bases
CGCCGGTCAGTACCGTTCTTCCAAACGACCTAGATGACGAGGACGAGGAGCTGGATGACAGCACTCTCGGGCGGCCTGAC
AGTGATGAGGAGGGCGGCGA

Downstream 100 bases:

>100_bases
GCCCAGTGGATCCCGAAGCTGCGAGACTGCAAAATGATAGTCACCTTATTAAACGCGCTCTCAGCAATGGCAGCGTTCAC
CGCTGCTGGATTATGGTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 517; Mature: 517

Protein sequence:

>517_residues
MKFLERSLEVDHIHEPELEFAFGQKSAHPKDGLHLYGPHLKGKKAKEIRVGVIGTSEGIGHFRTWSRELQSIVKVPPPGK
GEKANRLHLANFPGLEETFGISYDPDELSALSIPLADIDRATRVTNQHEAVDKVAKLYIERVNKHLHNEERAVDIWVLVL
PEIVYERCRPNSKRTGLPTEKGDFAKKQKKRESLPLLAGIIDQSGETIFDDVPDFHRRIKADFLNIAPTQLIRETTLAPG
AFLNTAGYPTRKTQDRATVAWNLGTGLYYKTQPRPPWRLSTIRPGVCYLGMVYKSLPNDPDGHACCAAQMFLNEGDGVVF
RGANGPWKTGDYDYHLKAPAAKDLLKLVLDSYVDTHGEAPKELFIHGQTYFNDEEWAAFADAAPKGTNVVGVRIRPTGGE
MKLFRDGDYPVLRGTALILDAQTAYIWTTGYVPQLDTYIGPETPNPLHVTVTRSKDAKPEIRDVLSDIMGLTKINYNSCN
FNDGLPVTVRFARMVGDVLTMGSAIKGEKKQPFKFYI

Sequences:

>Translated_517_residues
MKFLERSLEVDHIHEPELEFAFGQKSAHPKDGLHLYGPHLKGKKAKEIRVGVIGTSEGIGHFRTWSRELQSIVKVPPPGK
GEKANRLHLANFPGLEETFGISYDPDELSALSIPLADIDRATRVTNQHEAVDKVAKLYIERVNKHLHNEERAVDIWVLVL
PEIVYERCRPNSKRTGLPTEKGDFAKKQKKRESLPLLAGIIDQSGETIFDDVPDFHRRIKADFLNIAPTQLIRETTLAPG
AFLNTAGYPTRKTQDRATVAWNLGTGLYYKTQPRPPWRLSTIRPGVCYLGMVYKSLPNDPDGHACCAAQMFLNEGDGVVF
RGANGPWKTGDYDYHLKAPAAKDLLKLVLDSYVDTHGEAPKELFIHGQTYFNDEEWAAFADAAPKGTNVVGVRIRPTGGE
MKLFRDGDYPVLRGTALILDAQTAYIWTTGYVPQLDTYIGPETPNPLHVTVTRSKDAKPEIRDVLSDIMGLTKINYNSCN
FNDGLPVTVRFARMVGDVLTMGSAIKGEKKQPFKFYI
>Mature_517_residues
MKFLERSLEVDHIHEPELEFAFGQKSAHPKDGLHLYGPHLKGKKAKEIRVGVIGTSEGIGHFRTWSRELQSIVKVPPPGK
GEKANRLHLANFPGLEETFGISYDPDELSALSIPLADIDRATRVTNQHEAVDKVAKLYIERVNKHLHNEERAVDIWVLVL
PEIVYERCRPNSKRTGLPTEKGDFAKKQKKRESLPLLAGIIDQSGETIFDDVPDFHRRIKADFLNIAPTQLIRETTLAPG
AFLNTAGYPTRKTQDRATVAWNLGTGLYYKTQPRPPWRLSTIRPGVCYLGMVYKSLPNDPDGHACCAAQMFLNEGDGVVF
RGANGPWKTGDYDYHLKAPAAKDLLKLVLDSYVDTHGEAPKELFIHGQTYFNDEEWAAFADAAPKGTNVVGVRIRPTGGE
MKLFRDGDYPVLRGTALILDAQTAYIWTTGYVPQLDTYIGPETPNPLHVTVTRSKDAKPEIRDVLSDIMGLTKINYNSCN
FNDGLPVTVRFARMVGDVLTMGSAIKGEKKQPFKFYI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4CC_RHISN (P55385)

Other databases:

- EMBL:   U00090
- PIR:   T28630
- RefSeq:   NP_443795.1
- ProteinModelPortal:   P55385
- GeneID:   962341
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00110
- HOGENOM:   HBG293831
- ProtClustDB:   CLSK893849
- InterPro:   IPR012337

Pfam domain/function: SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 57804; Mature: 57804

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFLERSLEVDHIHEPELEFAFGQKSAHPKDGLHLYGPHLKGKKAKEIRVGVIGTSEGIG
CCHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEECCCCCC
HFRTWSRELQSIVKVPPPGKGEKANRLHLANFPGLEETFGISYDPDELSALSIPLADIDR
HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHCCCCCCCCCCCEEECCHHHHHH
ATRVTNQHEAVDKVAKLYIERVNKHLHNEERAVDIWVLVLPEIVYERCRPNSKRTGLPTE
HHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHHCCCCCCCCCCCCC
KGDFAKKQKKRESLPLLAGIIDQSGETIFDDVPDFHRRIKADFLNIAPTQLIRETTLAPG
CCHHHHHHHHHHCCCHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC
AFLNTAGYPTRKTQDRATVAWNLGTGLYYKTQPRPPWRLSTIRPGVCYLGMVYKSLPNDP
CCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCEEECCCCCCHHHHHHHHHHCCCCC
DGHACCAAQMFLNEGDGVVFRGANGPWKTGDYDYHLKAPAAKDLLKLVLDSYVDTHGEAP
CCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCC
KELFIHGQTYFNDEEWAAFADAAPKGTNVVGVRIRPTGGEMKLFRDGDYPVLRGTALILD
HHEEEECCEEECCCHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCEEECEEEEEE
AQTAYIWTTGYVPQLDTYIGPETPNPLHVTVTRSKDAKPEIRDVLSDIMGLTKINYNSCN
CCEEEEEECCCCCCHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHEECCCCCC
FNDGLPVTVRFARMVGDVLTMGSAIKGEKKQPFKFYI
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
>Mature Secondary Structure
MKFLERSLEVDHIHEPELEFAFGQKSAHPKDGLHLYGPHLKGKKAKEIRVGVIGTSEGIG
CCHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEECCCCCC
HFRTWSRELQSIVKVPPPGKGEKANRLHLANFPGLEETFGISYDPDELSALSIPLADIDR
HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHCCCCCCCCCCCEEECCHHHHHH
ATRVTNQHEAVDKVAKLYIERVNKHLHNEERAVDIWVLVLPEIVYERCRPNSKRTGLPTE
HHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHHCCCCCCCCCCCCC
KGDFAKKQKKRESLPLLAGIIDQSGETIFDDVPDFHRRIKADFLNIAPTQLIRETTLAPG
CCHHHHHHHHHHCCCHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC
AFLNTAGYPTRKTQDRATVAWNLGTGLYYKTQPRPPWRLSTIRPGVCYLGMVYKSLPNDP
CCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCEEECCCCCCHHHHHHHHHHCCCCC
DGHACCAAQMFLNEGDGVVFRGANGPWKTGDYDYHLKAPAAKDLLKLVLDSYVDTHGEAP
CCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCC
KELFIHGQTYFNDEEWAAFADAAPKGTNVVGVRIRPTGGEMKLFRDGDYPVLRGTALILD
HHEEEECCEEECCCHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCEEECEEEEEE
AQTAYIWTTGYVPQLDTYIGPETPNPLHVTVTRSKDAKPEIRDVLSDIMGLTKINYNSCN
CCEEEEEECCCCCCHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHEECCCCCC
FNDGLPVTVRFARMVGDVLTMGSAIKGEKKQPFKFYI
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424