Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519654
GI number: 16519654
Start: 41289
End: 41867
Strand: Reverse
Name: Not Available
Synonym: NGR_a00330
Alternate gene names: NA
Gene position: 41867-41289 (Counterclockwise)
Preceding gene: 16519653
Following gene: 16519655
Centisome position: 7.81
GC content: 53.2
Gene sequence:
>579_bases GTGGCGCGTTTTGGCGCTGATGAGTCGTGGATTGCTTGCGAGATACATATGAAAACACCACCACGGAGGTTTATTGTCGA ATTCAAGCAAGCACGGCGGCGATCAAAGGAACGAACGAATTCAGTCTGGGGAAACACGGACCTTAAGGCTTTGACCCGCG AAGTGGAAGAGATGGCTCCGCATTTGTTCAACTTAACGGAAGAGCCAGTATCCCCTAACGTAGCCTACGGTCCGCCGGCC AGCCCGAATGCAGAGTTTCTCATTGCAGACAAAGAGAATATCGGGCTTGGGCCAGAAGCCGTGACACCGGCCGAAGGTTC GGAAAACGCGTTCTCGGGGCTGTTGCAGGAGACGCCACCGGTCTCCCACACCCGAACAAACTCCAAACAGCGCATTTCGC GAAAGCTACCCGAGCGGTTGTCATTGGACGTGCGTGAGAATGTAGAACGCCCGATTTCTCGCGGTGAATTGGCCACTCTC GAAGCAGAAAACAAGCGCCTCAAAAGGCTGCTCGCTGAACGGATCCTTACCCAAAACTTGCAACTCAAGAAGATGCTTGA TCGGTTTAACCTCAATTGA
Upstream 100 bases:
>100_bases GGCGCCCTGCCGGCTTCCGAAAGGGACGGCGTGCCTAGCCTTACGGCCACTTGCATCGAGTCCGAAATGGCGGTATTTGG CCGAATGGTAAAGGAATGTC
Downstream 100 bases:
>100_bases CGATGTCGCATCCGCGCGAAAGTCTTAGGAATCTCTTGGGGGCCGGCGTTTTAGCAATCGCTGATAGCTCTTCAATCCCA CCTCAATGACACAGTTCAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 192; Mature: 191
Protein sequence:
>192_residues MARFGADESWIACEIHMKTPPRRFIVEFKQARRRSKERTNSVWGNTDLKALTREVEEMAPHLFNLTEEPVSPNVAYGPPA SPNAEFLIADKENIGLGPEAVTPAEGSENAFSGLLQETPPVSHTRTNSKQRISRKLPERLSLDVRENVERPISRGELATL EAENKRLKRLLAERILTQNLQLKKMLDRFNLN
Sequences:
>Translated_192_residues MARFGADESWIACEIHMKTPPRRFIVEFKQARRRSKERTNSVWGNTDLKALTREVEEMAPHLFNLTEEPVSPNVAYGPPA SPNAEFLIADKENIGLGPEAVTPAEGSENAFSGLLQETPPVSHTRTNSKQRISRKLPERLSLDVRENVERPISRGELATL EAENKRLKRLLAERILTQNLQLKKMLDRFNLN >Mature_191_residues ARFGADESWIACEIHMKTPPRRFIVEFKQARRRSKERTNSVWGNTDLKALTREVEEMAPHLFNLTEEPVSPNVAYGPPAS PNAEFLIADKENIGLGPEAVTPAEGSENAFSGLLQETPPVSHTRTNSKQRISRKLPERLSLDVRENVERPISRGELATLE AENKRLKRLLAERILTQNLQLKKMLDRFNLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To R.meliloti RA0936 and y4nF
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4AO_RHISN (P55362)
Other databases:
- EMBL: U00090 - RefSeq: NP_443774.1 - GeneID: 962331 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a00330 - HOGENOM: HBG653942
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21825; Mature: 21694
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARFGADESWIACEIHMKTPPRRFIVEFKQARRRSKERTNSVWGNTDLKALTREVEEMAP CCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH HLFNLTEEPVSPNVAYGPPASPNAEFLIADKENIGLGPEAVTPAEGSENAFSGLLQETPP HHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC VSHTRTNSKQRISRKLPERLSLDVRENVERPISRGELATLEAENKRLKRLLAERILTQNL CCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCH QLKKMLDRFNLN HHHHHHHHHCCC >Mature Secondary Structure ARFGADESWIACEIHMKTPPRRFIVEFKQARRRSKERTNSVWGNTDLKALTREVEEMAP CCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH HLFNLTEEPVSPNVAYGPPASPNAEFLIADKENIGLGPEAVTPAEGSENAFSGLLQETPP HHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC VSHTRTNSKQRISRKLPERLSLDVRENVERPISRGELATLEAENKRLKRLLAERILTQNL CCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCH QLKKMLDRFNLN HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424