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The map label for this gene is yqcD [C]

Identifier: 16273250

GI number: 16273250

Start: 1416165

End: 1417490

Strand: Reverse

Name: yqcD [C]

Synonym: HI1340

Alternate gene names: 16273250

Gene position: 1417490-1416165 (Counterclockwise)

Preceding gene: 16273251

Following gene: 16273243

Centisome position: 77.45

GC content: 38.61

Gene sequence:

>1326_bases
ATGAATTACCAAGACAACAGCTTAAAATCCTTAAAACTCGGTCAAAAAACGGAATATGCCTCTCAATATGACCGCACTTT
ATTACAGCCTGTGCCACGTGCGTTAAATCGTGATGGATTAGGCATTACTCAAAACCAACCATTTACTATCGGTGCAGATA
TTTGGACGGCTTATGAAATCTCGTGGCTCAACGAAAAAGGCTTGCCACAAGTGGCTATCGCAGATATTTATCTGGATTAT
CAAAGCCAAAATTTGATTGAGTCAAAAAGTTTTAAACTTTATTTAAATAGCTTCAACCAAAGCAAATTTACCGACTTCAA
TGCCGTTCAACAAACTATGCAACGCGATTTAAGCGAATGTGCGCAAGGCGATGTAAAAGTGCGGTTAAATCCAGTGGCAG
TTTATGATGCTCAAAAAATTAATCATTTACAAGGCGATTGCATTGATGAACAAGATATTGAAATTACTAGCTACGAATTT
AACGCTAATTGGCTGAAAGATTGCGTATCGAATGAAATTGTCGAAGAAAAATTAGTCAGCCATTTATTGAAATCTAACTG
CCTCATTACCAATCAGCCAGACTGGGGAACGGATCAAGCACAACAAGCCATATTAACGGCACGTAATAACAAATTAAATT
TTGAAACCCAACGCAAAACAGCAGAACAAACACTGCGTAATCTTCTCAACCTAAAACCAAATGAAGCATTAAATATCACG
TTCCCACATATTATGAATGTGAAAACAGCAGGCGTAAACTTAAACGTGCCTGTGTCTGTAATTGCAAATCGTCCTGATGT
AAAAGCAGCACAATTCCGTTTAAGCAGTGCATTCAAAAATGCCAAAGCAACTCAAAAAAGTTGGTTCCCAGAGGTTAATT
TAGGTGCAAGCCTTTCTTCAACAGCAAGCACGGTTGGTACGGCGTTACATAACCCTGTGGCTGCTGGCACAGTAGGAATT
AGCCTACCGTTCTTAAATTGGAACACCGTAAAATGGAACGTTAAAATTTCTGAAGCTGACTATGAAACAGCTCGTTTAAA
TTACGAACAACGTATTACCACCGCTCTCAATAATGTGGATACCAACTATTTCGCATTTACCCAAGCGCAAAGTACATTAA
GTAATTTACAGCAAACCCATAGTTACAATCAGCGTATCACACAATATTATCGAAACCGCTATAATGCGGGCGTATCCGAA
TTGCGCGAATGGTTAGTTGCAGCCAATACGGAAAAATCATCACAACTTGCGATTTTGAATGCAAAATATCAAGTGCTGCA
AAGTGAAAATGCGGTATATAGCTCAATGGCGGGATATTATTTGTAA

Upstream 100 bases:

>100_bases
TGGAATGATAAAGTCTTAGCCCCCTTCCGACGCTTCGCGCCACCTTCCCCCGCAAGCAAGGGAAGGCAAAATTATTGTTT
AACATATAAAGGAAAAATAA

Downstream 100 bases:

>100_bases
AAATCAAATTGGATTAATCTATGAAAAATCCCTGTTAAATTTCTTTAACAGGGATTTTGTTATTTAAATTAAACCTATTA
TTTTGTCGCTTCTTTCACTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MNYQDNSLKSLKLGQKTEYASQYDRTLLQPVPRALNRDGLGITQNQPFTIGADIWTAYEISWLNEKGLPQVAIADIYLDY
QSQNLIESKSFKLYLNSFNQSKFTDFNAVQQTMQRDLSECAQGDVKVRLNPVAVYDAQKINHLQGDCIDEQDIEITSYEF
NANWLKDCVSNEIVEEKLVSHLLKSNCLITNQPDWGTDQAQQAILTARNNKLNFETQRKTAEQTLRNLLNLKPNEALNIT
FPHIMNVKTAGVNLNVPVSVIANRPDVKAAQFRLSSAFKNAKATQKSWFPEVNLGASLSSTASTVGTALHNPVAAGTVGI
SLPFLNWNTVKWNVKISEADYETARLNYEQRITTALNNVDTNYFAFTQAQSTLSNLQQTHSYNQRITQYYRNRYNAGVSE
LREWLVAANTEKSSQLAILNAKYQVLQSENAVYSSMAGYYL

Sequences:

>Translated_441_residues
MNYQDNSLKSLKLGQKTEYASQYDRTLLQPVPRALNRDGLGITQNQPFTIGADIWTAYEISWLNEKGLPQVAIADIYLDY
QSQNLIESKSFKLYLNSFNQSKFTDFNAVQQTMQRDLSECAQGDVKVRLNPVAVYDAQKINHLQGDCIDEQDIEITSYEF
NANWLKDCVSNEIVEEKLVSHLLKSNCLITNQPDWGTDQAQQAILTARNNKLNFETQRKTAEQTLRNLLNLKPNEALNIT
FPHIMNVKTAGVNLNVPVSVIANRPDVKAAQFRLSSAFKNAKATQKSWFPEVNLGASLSSTASTVGTALHNPVAAGTVGI
SLPFLNWNTVKWNVKISEADYETARLNYEQRITTALNNVDTNYFAFTQAQSTLSNLQQTHSYNQRITQYYRNRYNAGVSE
LREWLVAANTEKSSQLAILNAKYQVLQSENAVYSSMAGYYL
>Mature_441_residues
MNYQDNSLKSLKLGQKTEYASQYDRTLLQPVPRALNRDGLGITQNQPFTIGADIWTAYEISWLNEKGLPQVAIADIYLDY
QSQNLIESKSFKLYLNSFNQSKFTDFNAVQQTMQRDLSECAQGDVKVRLNPVAVYDAQKINHLQGDCIDEQDIEITSYEF
NANWLKDCVSNEIVEEKLVSHLLKSNCLITNQPDWGTDQAQQAILTARNNKLNFETQRKTAEQTLRNLLNLKPNEALNIT
FPHIMNVKTAGVNLNVPVSVIANRPDVKAAQFRLSSAFKNAKATQKSWFPEVNLGASLSSTASTVGTALHNPVAAGTVGI
SLPFLNWNTVKWNVKISEADYETARLNYEQRITTALNNVDTNYFAFTQAQSTLSNLQQTHSYNQRITQYYRNRYNAGVSE
LREWLVAANTEKSSQLAILNAKYQVLQSENAVYSSMAGYYL

Specific function: Unknown

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family

Homologues:

Organism=Escherichia coli, GI1789158, Length=261, Percent_Identity=48.2758620689655, Blast_Score=235, Evalue=4e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1340_HAEIN (P44165)

Other databases:

- EMBL:   L42023
- PIR:   C64026
- RefSeq:   NP_439491.1
- ProteinModelPortal:   P44165
- SMR:   P44165
- GeneID:   950814
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1340
- NMPDR:   fig|71421.1.peg.1276
- TIGR:   HI_1340
- BioCyc:   HINF71421:HI_1340-MONOMER
- InterPro:   IPR003423

Pfam domain/function: PF02321 OEP

EC number: NA

Molecular weight: Translated: 49790; Mature: 49790

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYQDNSLKSLKLGQKTEYASQYDRTLLQPVPRALNRDGLGITQNQPFTIGADIWTAYEI
CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEEE
SWLNEKGLPQVAIADIYLDYQSQNLIESKSFKLYLNSFNQSKFTDFNAVQQTMQRDLSEC
EECCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
AQGDVKVRLNPVAVYDAQKINHLQGDCIDEQDIEITSYEFNANWLKDCVSNEIVEEKLVS
HCCCEEEEEEEEEEECHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
HLLKSNCLITNQPDWGTDQAQQAILTARNNKLNFETQRKTAEQTLRNLLNLKPNEALNIT
HHHHCCCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE
FPHIMNVKTAGVNLNVPVSVIANRPDVKAAQFRLSSAFKNAKATQKSWFPEVNLGASLSS
CCHHEEEEECCEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
TASTVGTALHNPVAAGTVGISLPFLNWNTVKWNVKISEADYETARLNYEQRITTALNNVD
HHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCHHHHCCHHHHHHHHHHCCC
TNYFAFTQAQSTLSNLQQTHSYNQRITQYYRNRYNAGVSELREWLVAANTEKSSQLAILN
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEE
AKYQVLQSENAVYSSMAGYYL
HHHHHHHCCCHHHHHHCCCCC
>Mature Secondary Structure
MNYQDNSLKSLKLGQKTEYASQYDRTLLQPVPRALNRDGLGITQNQPFTIGADIWTAYEI
CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEEE
SWLNEKGLPQVAIADIYLDYQSQNLIESKSFKLYLNSFNQSKFTDFNAVQQTMQRDLSEC
EECCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
AQGDVKVRLNPVAVYDAQKINHLQGDCIDEQDIEITSYEFNANWLKDCVSNEIVEEKLVS
HCCCEEEEEEEEEEECHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
HLLKSNCLITNQPDWGTDQAQQAILTARNNKLNFETQRKTAEQTLRNLLNLKPNEALNIT
HHHHCCCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE
FPHIMNVKTAGVNLNVPVSVIANRPDVKAAQFRLSSAFKNAKATQKSWFPEVNLGASLSS
CCHHEEEEECCEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
TASTVGTALHNPVAAGTVGISLPFLNWNTVKWNVKISEADYETARLNYEQRITTALNNVD
HHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCHHHHCCHHHHHHHHHHCCC
TNYFAFTQAQSTLSNLQQTHSYNQRITQYYRNRYNAGVSELREWLVAANTEKSSQLAILN
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEE
AKYQVLQSENAVYSSMAGYYL
HHHHHHHCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800