| Definition | Haemophilus influenzae Rd KW20 chromosome, complete genome. |
|---|---|
| Accession | NC_000907 |
| Length | 1,830,138 |
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The map label for this gene is dppD
Identifier: 16273107
GI number: 16273107
Start: 1250727
End: 1251719
Strand: Reverse
Name: dppD
Synonym: HI1185
Alternate gene names: 16273107
Gene position: 1251719-1250727 (Counterclockwise)
Preceding gene: 16273108
Following gene: 16273106
Centisome position: 68.39
GC content: 42.6
Gene sequence:
>993_bases ATGGCATTATTAGACGTAAAAGAACTTTCTGTTCACTTTGGCGATAAAAAAACGCCATTTAAAGCAGTGGATCGCATTAG CTATCAAGTCGCACAAGGCGAAGTGCTTGGCATTGTAGGAGAATCAGGCTCAGGTAAATCTGTGAGTTCTCTCGCAATTA TGGGATTAATTGATCATCCTGGACGTGTATCTGCTGAATCCTTGCAATTTGAAAATACTGATTTACTCACTTTAGAGAGT AAAGCTAAACGCCAGCTTATTGGTGCTGATGTAGCAATGATTTTCCAAGATCCGATGACAAGTTTGAATCCTGCTTATAC TGTGGGCTTCCAAATTATGGAAGCGTTAAAAACTCACGAAGGCGGCACAAAAAAGGCGAGAAAAGACCGCACTTTAGAGC TTTTAAAATTGGTCGGTATTCCTGATCCTGAATCTCGGATTGATGTTTATCCCCATCAGCTGTCTGGTGGAATGAGCCAG CGCGTGATGATTGCGATGGCAATTGCTTGCAGACCTAAATTATTGATTGCTGACGAACCAACCACGGCATTGGACGTGAC TATCCAAGCTCAAATTATGGAACTCTTACTTGAATTGCAAAAGAAAGAATGCATGTCCCTAATTTTGATTACTCACGATC TAGCACTTGTGGCTGAAGCGGCAGAGCGAATTATCGTGATGTATGCTGGACAAATCGTTGAAGAAGGCACCGCAAAAGAT ATTTTCCGCGAACCAAAACATCCTTACACACAAGCCTTGTTACGTTCATTACCTGAATTTGCAGAGGGAAAATCTCGCTT AGAATCATTACAAGGGGTCGTCCCTGGAAAATACGATCGCCCAACAGGCTGTTTATTAAATCCTCGCTGCCCTTATGCCA CCGAATATTGTCGCCAAGTTGAACCTCAATTGCATCATATCGGTTCGCGTAAAGTAAAATGCCATACTCCGCTGAACGAG CAAGGCAATCCAGTTGAATATCAAGGAGCTTAA
Upstream 100 bases:
>100_bases TCCTGGCTTAGTGATTTTATCTTTGGTATTAGCTTTCAACTTAATGGGCGATGGCTTGCGTGATGCCCTTGATCCAAAAC TCAAACAATAGGAAAACAGA
Downstream 100 bases:
>100_bases TAATGACGAATGAAGTAAAAGAAAATACGCCATTATTAAATGCCATTGGCTTAAAAAAATATTACCCTGTAAAAAAAGGC TTGTTTGCAAAACCACAGCA
Product: dipeptide transporter ATP-binding subunit
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MALLDVKELSVHFGDKKTPFKAVDRISYQVAQGEVLGIVGESGSGKSVSSLAIMGLIDHPGRVSAESLQFENTDLLTLES KAKRQLIGADVAMIFQDPMTSLNPAYTVGFQIMEALKTHEGGTKKARKDRTLELLKLVGIPDPESRIDVYPHQLSGGMSQ RVMIAMAIACRPKLLIADEPTTALDVTIQAQIMELLLELQKKECMSLILITHDLALVAEAAERIIVMYAGQIVEEGTAKD IFREPKHPYTQALLRSLPEFAEGKSRLESLQGVVPGKYDRPTGCLLNPRCPYATEYCRQVEPQLHHIGSRKVKCHTPLNE QGNPVEYQGA
Sequences:
>Translated_330_residues MALLDVKELSVHFGDKKTPFKAVDRISYQVAQGEVLGIVGESGSGKSVSSLAIMGLIDHPGRVSAESLQFENTDLLTLES KAKRQLIGADVAMIFQDPMTSLNPAYTVGFQIMEALKTHEGGTKKARKDRTLELLKLVGIPDPESRIDVYPHQLSGGMSQ RVMIAMAIACRPKLLIADEPTTALDVTIQAQIMELLLELQKKECMSLILITHDLALVAEAAERIIVMYAGQIVEEGTAKD IFREPKHPYTQALLRSLPEFAEGKSRLESLQGVVPGKYDRPTGCLLNPRCPYATEYCRQVEPQLHHIGSRKVKCHTPLNE QGNPVEYQGA >Mature_329_residues ALLDVKELSVHFGDKKTPFKAVDRISYQVAQGEVLGIVGESGSGKSVSSLAIMGLIDHPGRVSAESLQFENTDLLTLESK AKRQLIGADVAMIFQDPMTSLNPAYTVGFQIMEALKTHEGGTKKARKDRTLELLKLVGIPDPESRIDVYPHQLSGGMSQR VMIAMAIACRPKLLIADEPTTALDVTIQAQIMELLLELQKKECMSLILITHDLALVAEAAERIIVMYAGQIVEEGTAKDI FREPKHPYTQALLRSLPEFAEGKSRLESLQGVVPGKYDRPTGCLLNPRCPYATEYCRQVEPQLHHIGSRKVKCHTPLNEQ GNPVEYQGA
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain
Homologues:
Organism=Homo sapiens, GI42490749, Length=242, Percent_Identity=29.3388429752066, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI9665248, Length=223, Percent_Identity=29.5964125560538, Blast_Score=68, Evalue=1e-11, Organism=Escherichia coli, GI1789963, Length=325, Percent_Identity=74.4615384615385, Blast_Score=504, Evalue=1e-144, Organism=Escherichia coli, GI48994883, Length=320, Percent_Identity=45.9375, Blast_Score=284, Evalue=5e-78, Organism=Escherichia coli, GI1787548, Length=327, Percent_Identity=42.8134556574924, Blast_Score=273, Evalue=1e-74, Organism=Escherichia coli, GI145693107, Length=268, Percent_Identity=48.134328358209, Blast_Score=252, Evalue=2e-68, Organism=Escherichia coli, GI1787759, Length=318, Percent_Identity=39.3081761006289, Blast_Score=246, Evalue=2e-66, Organism=Escherichia coli, GI1788506, Length=283, Percent_Identity=45.2296819787986, Blast_Score=225, Evalue=3e-60, Organism=Escherichia coli, GI1787500, Length=326, Percent_Identity=38.6503067484663, Blast_Score=220, Evalue=1e-58, Organism=Escherichia coli, GI1789962, Length=329, Percent_Identity=35.8662613981763, Blast_Score=207, Evalue=1e-54, Organism=Escherichia coli, GI1787758, Length=324, Percent_Identity=34.2592592592593, Blast_Score=185, Evalue=4e-48, Organism=Escherichia coli, GI48994997, Length=244, Percent_Identity=34.4262295081967, Blast_Score=144, Evalue=9e-36, Organism=Escherichia coli, GI1787547, Length=270, Percent_Identity=32.2222222222222, Blast_Score=140, Evalue=8e-35, Organism=Escherichia coli, GI1789890, Length=239, Percent_Identity=35.5648535564854, Blast_Score=140, Evalue=1e-34, Organism=Escherichia coli, GI1789891, Length=239, Percent_Identity=35.5648535564854, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI1786398, Length=272, Percent_Identity=31.9852941176471, Blast_Score=125, Evalue=5e-30, Organism=Escherichia coli, GI1788225, Length=256, Percent_Identity=33.59375, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI1787029, Length=255, Percent_Identity=30.5882352941176, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1789032, Length=231, Percent_Identity=31.1688311688312, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1787089, Length=231, Percent_Identity=37.2294372294372, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1789672, Length=254, Percent_Identity=29.1338582677165, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1788761, Length=245, Percent_Identity=27.3469387755102, Blast_Score=101, Evalue=8e-23, Organism=Escherichia coli, GI87081834, Length=234, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787370, Length=240, Percent_Identity=28.75, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI87081709, Length=252, Percent_Identity=27.3809523809524, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787105, Length=233, Percent_Identity=33.0472103004292, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI87081791, Length=258, Percent_Identity=29.4573643410853, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1786703, Length=234, Percent_Identity=32.4786324786325, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1790162, Length=254, Percent_Identity=26.7716535433071, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1788450, Length=253, Percent_Identity=26.4822134387352, Blast_Score=95, Evalue=7e-21, Organism=Escherichia coli, GI1788644, Length=180, Percent_Identity=31.6666666666667, Blast_Score=92, Evalue=6e-20, Organism=Escherichia coli, GI1787712, Length=253, Percent_Identity=28.0632411067194, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786872, Length=220, Percent_Identity=30.4545454545455, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1786563, Length=233, Percent_Identity=29.1845493562232, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI48994943, Length=254, Percent_Identity=25.5905511811024, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI87082267, Length=258, Percent_Identity=26.3565891472868, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI1789873, Length=218, Percent_Identity=28.8990825688073, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI1786345, Length=242, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786319, Length=230, Percent_Identity=31.304347826087, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1789593, Length=244, Percent_Identity=24.5901639344262, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790467, Length=241, Percent_Identity=27.3858921161826, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787164, Length=210, Percent_Identity=27.1428571428571, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786253, Length=220, Percent_Identity=25.9090909090909, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1789991, Length=222, Percent_Identity=27.027027027027, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1786803, Length=89, Percent_Identity=39.3258426966292, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI48995001, Length=224, Percent_Identity=29.0178571428571, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1787112, Length=245, Percent_Identity=26.530612244898, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787792, Length=223, Percent_Identity=27.3542600896861, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788053, Length=213, Percent_Identity=25.8215962441315, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1790190, Length=227, Percent_Identity=25.5506607929515, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1786653, Length=253, Percent_Identity=25.6916996047431, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787143, Length=252, Percent_Identity=28.968253968254, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1790739, Length=105, Percent_Identity=31.4285714285714, Blast_Score=62, Evalue=7e-11, Organism=Caenorhabditis elegans, GI193209708, Length=213, Percent_Identity=31.4553990610329, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115534520, Length=245, Percent_Identity=26.9387755102041, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI212646699, Length=225, Percent_Identity=29.7777777777778, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17558664, Length=223, Percent_Identity=30.4932735426009, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193202349, Length=246, Percent_Identity=27.6422764227642, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193208177, Length=234, Percent_Identity=26.4957264957265, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI71992285, Length=241, Percent_Identity=26.9709543568465, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17569143, Length=219, Percent_Identity=29.6803652968037, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17541710, Length=237, Percent_Identity=27.0042194092827, Blast_Score=65, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=257, Percent_Identity=25.2918287937743, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6323217, Length=220, Percent_Identity=28.6363636363636, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322640, Length=261, Percent_Identity=25.6704980842912, Blast_Score=64, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6319856, Length=224, Percent_Identity=27.2321428571429, Blast_Score=63, Evalue=6e-11, Organism=Drosophila melanogaster, GI28574150, Length=240, Percent_Identity=24.1666666666667, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI116007328, Length=240, Percent_Identity=24.1666666666667, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24582014, Length=257, Percent_Identity=26.0700389105058, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI24582012, Length=257, Percent_Identity=26.0700389105058, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI85726357, Length=240, Percent_Identity=26.25, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI17136662, Length=248, Percent_Identity=26.2096774193548, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): DPPD_HAEIN (P45095)
Other databases:
- EMBL: L42023 - EMBL: U17295 - PIR: F64188 - RefSeq: NP_439341.1 - ProteinModelPortal: P45095 - SMR: P45095 - GeneID: 950137 - GenomeReviews: L42023_GR - KEGG: hin:HI1185 - NMPDR: fig|71421.1.peg.1132 - TIGR: HI_1185 - HOGENOM: HBG758042 - OMA: GQVPELF - ProtClustDB: PRK11022 - BioCyc: HINF71421:HI_1185-MONOMER - InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 - SMART: SM00382 - TIGRFAMs: TIGR01727
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY
EC number: NA
Molecular weight: Translated: 36329; Mature: 36197
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: PS00211 ABC_TRANSPORTER_1; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLDVKELSVHFGDKKTPFKAVDRISYQVAQGEVLGIVGESGSGKSVSSLAIMGLIDHP CCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHEEEEEEECCC GRVSAESLQFENTDLLTLESKAKRQLIGADVAMIFQDPMTSLNPAYTVGFQIMEALKTHE CCCCHHHEEECCCCEEEECHHHHHHHHHCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC GGTKKARKDRTLELLKLVGIPDPESRIDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP CCCHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHCCCCHHHHHHHHHHHCCCEEEEECCC TTALDVTIQAQIMELLLELQKKECMSLILITHDLALVAEAAERIIVMYAGQIVEEGTAKD CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHEEHHHHHHCCCHHH IFREPKHPYTQALLRSLPEFAEGKSRLESLQGVVPGKYDRPTGCLLNPRCPYATEYCRQV HHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHHHHC EPQLHHIGSRKVKCHTPLNEQGNPVEYQGA CHHHHHCCCCCEEEECCCCCCCCCEECCCC >Mature Secondary Structure ALLDVKELSVHFGDKKTPFKAVDRISYQVAQGEVLGIVGESGSGKSVSSLAIMGLIDHP CCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHEEEEEEECCC GRVSAESLQFENTDLLTLESKAKRQLIGADVAMIFQDPMTSLNPAYTVGFQIMEALKTHE CCCCHHHEEECCCCEEEECHHHHHHHHHCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC GGTKKARKDRTLELLKLVGIPDPESRIDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP CCCHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHCCCCHHHHHHHHHHHCCCEEEEECCC TTALDVTIQAQIMELLLELQKKECMSLILITHDLALVAEAAERIIVMYAGQIVEEGTAKD CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHEEHHHHHHCCCHHH IFREPKHPYTQALLRSLPEFAEGKSRLESLQGVVPGKYDRPTGCLLNPRCPYATEYCRQV HHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHHHHC EPQLHHIGSRKVKCHTPLNEQGNPVEYQGA CHHHHHCCCCCEEEECCCCCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800; 8550458