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The map label for this gene is ycjD [C]

Identifier: 16273086

GI number: 16273086

Start: 1231372

End: 1231845

Strand: Reverse

Name: ycjD [C]

Synonym: HI1162

Alternate gene names: 16273086

Gene position: 1231845-1231372 (Counterclockwise)

Preceding gene: 16273087

Following gene: 16273085

Centisome position: 67.31

GC content: 36.92

Gene sequence:

>474_bases
ATGATAACTTGCCTTCCCCTGCTTGCGGGGGAAGGTGCCCGAAGGAAGGGGGATATAGGGATGCGAAATAAAAATAAACG
ATTAGCCCAATATGCTACAGAATTAAGACGTAATATGACAGATGCAGAATATGCACTATGGTACCATTTGAGAAATAAAC
TCTTTTGCGGTATCCGTTTTAATAGACAGGTTATTATTGGTCATTACATTGTGGATTTTTGCAGTAGAAAATTAAAACTT
GTTATTGAATTAGATGGCATTCAGCACGTAGAACAAGAACAATATGATTTAGAAAGAACAAAATTCTTAACAGCACAAGG
CTATAAAGTTATTCGCTTTTGGAATGATGAAGTACTAAAAAACATAGATAATGTACTTGAGGCAATTTATGTTGAAATTG
AGCATTTATCCCCCCCTCACTTCGGCAGCTCCCCCCATAAATGGGTGGAGCCAAGATTAGAGGTTCTAAAATAA

Upstream 100 bases:

>100_bases
TTTAGCAACCGGTTATTCTTGCCGCAGTCAAGTAAAACGTTATGAACATGTAGTGTTGAAGCATCCTGTGCAGGCGTTAC
TTGAGGTTTTAAAATAAATA

Downstream 100 bases:

>100_bases
ATAATGATAACTTGCCTTCTGCTTATTAGAGGTTTTAAAAAAACTTACCTTCCCCTGCTTGCGGGGGAAGGTGCCTGAAG
GGAAGAAGAATGTGCTTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MITCLPLLAGEGARRKGDIGMRNKNKRLAQYATELRRNMTDAEYALWYHLRNKLFCGIRFNRQVIIGHYIVDFCSRKLKL
VIELDGIQHVEQEQYDLERTKFLTAQGYKVIRFWNDEVLKNIDNVLEAIYVEIEHLSPPHFGSSPHKWVEPRLEVLK

Sequences:

>Translated_157_residues
MITCLPLLAGEGARRKGDIGMRNKNKRLAQYATELRRNMTDAEYALWYHLRNKLFCGIRFNRQVIIGHYIVDFCSRKLKL
VIELDGIQHVEQEQYDLERTKFLTAQGYKVIRFWNDEVLKNIDNVLEAIYVEIEHLSPPHFGSSPHKWVEPRLEVLK
>Mature_157_residues
MITCLPLLAGEGARRKGDIGMRNKNKRLAQYATELRRNMTDAEYALWYHLRNKLFCGIRFNRQVIIGHYIVDFCSRKLKL
VIELDGIQHVEQEQYDLERTKFLTAQGYKVIRFWNDEVLKNIDNVLEAIYVEIEHLSPPHFGSSPHKWVEPRLEVLK

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ycjD and H.influenzae HI_0925

Homologues:

Organism=Escherichia coli, GI1787546, Length=112, Percent_Identity=42.8571428571429, Blast_Score=96, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1162_HAEIN (P44116)

Other databases:

- EMBL:   L42023
- PIR:   H64020
- RefSeq:   NP_439320.1
- ProteinModelPortal:   P44116
- GeneID:   950122
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1162
- NMPDR:   fig|71421.1.peg.1115
- TIGR:   HI_1162
- HOGENOM:   HBG691556
- OMA:   TIGPYFA
- ProtClustDB:   CLSK808490
- BioCyc:   HINF71421:HI_1162-MONOMER
- InterPro:   IPR007569
- InterPro:   IPR011335

Pfam domain/function: PF04480 DUF559; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 18542; Mature: 18542

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITCLPLLAGEGARRKGDIGMRNKNKRLAQYATELRRNMTDAEYALWYHLRNKLFCGIRF
CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEEEE
NRQVIIGHYIVDFCSRKLKLVIELDGIQHVEQEQYDLERTKFLTAQGYKVIRFWNDEVLK
CCEEEHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHEECCCCEEEEEEECHHHHH
NIDNVLEAIYVEIEHLSPPHFGSSPHKWVEPRLEVLK
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MITCLPLLAGEGARRKGDIGMRNKNKRLAQYATELRRNMTDAEYALWYHLRNKLFCGIRF
CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEEEE
NRQVIIGHYIVDFCSRKLKLVIELDGIQHVEQEQYDLERTKFLTAQGYKVIRFWNDEVLK
CCEEEHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHEECCCCEEEEEEECHHHHH
NIDNVLEAIYVEIEHLSPPHFGSSPHKWVEPRLEVLK
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023