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The map label for this gene is nfi [H]

Identifier: 162420980

GI number: 162420980

Start: 481817

End: 482557

Strand: Direct

Name: nfi [H]

Synonym: YpAngola_A0460

Alternate gene names: 162420980

Gene position: 481817-482557 (Clockwise)

Preceding gene: 162421492

Following gene: 162418947

Centisome position: 10.7

GC content: 51.96

Gene sequence:

>741_bases
ATGGTGAAGACTAAATCGAGGGTTGAGACTAAATCAATGTTTGATACTAAAGCGCTACAGGCAGAGCAGCGGCAACGGGC
ATCGGAGATTAGTCTTCATGATGGCATTGATAACCAGTCTGTGCGCTTTATTGCTGGAGCTGATGTCGGTTTTGAGCAGC
ATGGGGAGATAACCCGTGCCGCTATCGCTATTTTACGCTATCCCTCTCTGGCGCTGGTGGAATACCAGGTTGCCAGAGTG
GCAACTTCTCTGCCTTATATCCCCGGTTTACTCTCTTTTCGTGAATATCCAGCGCTGTTAGCCGCGTGGGCGCAGTTGCA
GCAACGCCCTGATCTGATTCTGGTCGATGGGCAAGGCATCGCTCATCCTCGCCGTCTCGGCGTTGCCAGCCATTTTGGGT
TATTGGTCGATGTACCGACGATTGGTGTCGCTAAAAGCCGCCTGTGTGGTGATTTCTTGCCACTGCATCAAGATGTTGGT
GCGGTGCAGCCCTTGTTCGATAACGATGAGCAGCTTGGTTGGGTATGGCGCAGTAAAATCCGCTGTAACCCACTGTTTAT
TTCGCCTGGGCATCGGGTGAGTGTTGGCAGTGCGCTGGCATGGGTTCAACGTTGCATGGCGGGTTATCGTCTGCCTGAAC
CAACCCGCTGGGCGGATGCTATTGCTTCAAACCGTCCGCAATTTCAACGTTGGCTGCGGAAAAATCCTGATTTTCTTGGC
AAGCGTAGGGATATGATTTAA

Upstream 100 bases:

>100_bases
TACCTCCAGCACATGCCGGTGCATTTGTGAACGCGGTACATGCGCTATCACGGCCTTATCATCAAAAATAATCAGCGTGT
AGGATGGAGCCGATTGGTCA

Downstream 100 bases:

>100_bases
TTTCGGTTACACTGCCGCGCAGATAATGAATAATGAGAACTCATCATGTTACGTAATCCGATTCATCTACGGCTCGAAAA
GCTGGAAAGTTGGCAACATC

Product: endonuclease V

Products: NA

Alternate protein names: Deoxyinosine 3'endonuclease; Deoxyribonuclease V; DNase V [H]

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MVKTKSRVETKSMFDTKALQAEQRQRASEISLHDGIDNQSVRFIAGADVGFEQHGEITRAAIAILRYPSLALVEYQVARV
ATSLPYIPGLLSFREYPALLAAWAQLQQRPDLILVDGQGIAHPRRLGVASHFGLLVDVPTIGVAKSRLCGDFLPLHQDVG
AVQPLFDNDEQLGWVWRSKIRCNPLFISPGHRVSVGSALAWVQRCMAGYRLPEPTRWADAIASNRPQFQRWLRKNPDFLG
KRRDMI

Sequences:

>Translated_246_residues
MVKTKSRVETKSMFDTKALQAEQRQRASEISLHDGIDNQSVRFIAGADVGFEQHGEITRAAIAILRYPSLALVEYQVARV
ATSLPYIPGLLSFREYPALLAAWAQLQQRPDLILVDGQGIAHPRRLGVASHFGLLVDVPTIGVAKSRLCGDFLPLHQDVG
AVQPLFDNDEQLGWVWRSKIRCNPLFISPGHRVSVGSALAWVQRCMAGYRLPEPTRWADAIASNRPQFQRWLRKNPDFLG
KRRDMI
>Mature_246_residues
MVKTKSRVETKSMFDTKALQAEQRQRASEISLHDGIDNQSVRFIAGADVGFEQHGEITRAAIAILRYPSLALVEYQVARV
ATSLPYIPGLLSFREYPALLAAWAQLQQRPDLILVDGQGIAHPRRLGVASHFGLLVDVPTIGVAKSRLCGDFLPLHQDVG
AVQPLFDNDEQLGWVWRSKIRCNPLFISPGHRVSVGSALAWVQRCMAGYRLPEPTRWADAIASNRPQFQRWLRKNPDFLG
KRRDMI

Specific function: Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. Acts in DNA repair [H]

COG id: COG1515

COG function: function code L; Deoxyinosine 3'endonuclease (endonuclease V)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the endonuclease V family [H]

Homologues:

Organism=Homo sapiens, GI31542775, Length=195, Percent_Identity=38.4615384615385, Blast_Score=110, Evalue=9e-25,
Organism=Homo sapiens, GI257467548, Length=121, Percent_Identity=42.1487603305785, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI257467550, Length=121, Percent_Identity=42.1487603305785, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI87082357, Length=223, Percent_Identity=69.0582959641256, Blast_Score=327, Evalue=6e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007581 [H]

Pfam domain/function: PF04493 Endonuclease_5 [H]

EC number: =3.1.21.7 [H]

Molecular weight: Translated: 27620; Mature: 27620

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKTKSRVETKSMFDTKALQAEQRQRASEISLHDGIDNQSVRFIAGADVGFEQHGEITRA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHCCHHHHH
AIAILRYPSLALVEYQVARVATSLPYIPGLLSFREYPALLAAWAQLQQRPDLILVDGQGI
HHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
AHPRRLGVASHFGLLVDVPTIGVAKSRLCGDFLPLHQDVGAVQPLFDNDEQLGWVWRSKI
CCHHHHCHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC
RCNPLFISPGHRVSVGSALAWVQRCMAGYRLPEPTRWADAIASNRPQFQRWLRKNPDFLG
CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCHHH
KRRDMI
HHCCCC
>Mature Secondary Structure
MVKTKSRVETKSMFDTKALQAEQRQRASEISLHDGIDNQSVRFIAGADVGFEQHGEITRA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHCCHHHHH
AIAILRYPSLALVEYQVARVATSLPYIPGLLSFREYPALLAAWAQLQQRPDLILVDGQGI
HHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
AHPRRLGVASHFGLLVDVPTIGVAKSRLCGDFLPLHQDVGAVQPLFDNDEQLGWVWRSKI
CCHHHHCHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC
RCNPLFISPGHRVSVGSALAWVQRCMAGYRLPEPTRWADAIASNRPQFQRWLRKNPDFLG
CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCHHH
KRRDMI
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA