Definition | Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome. |
---|---|
Accession | NC_010125 |
Length | 3,944,163 |
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The map label for this gene is dosP [H]
Identifier: 162149573
GI number: 162149573
Start: 3894809
End: 3897376
Strand: Direct
Name: dosP [H]
Synonym: GDI_3812
Alternate gene names: 162149573
Gene position: 3894809-3897376 (Clockwise)
Preceding gene: 162149572
Following gene: 162149574
Centisome position: 98.75
GC content: 70.76
Gene sequence:
>2568_bases GTGGTCGTGACCGACGCGGACGGGCGCATCCTCTTCATCAATCGTGCGGCGGCGCGCCTGTGCGGCGGACAGCCCGAGGA ATGGGCCAGCCGTTCGCTGGCGGTCCTGCTGCCCGACATGGACATGACGCCGGACGGCACCCCGCGCGAGGTGCGGCTGG CAGGCCGCGATGGCGCCGCGTTGTGGCTGGAGGTGACCCTGAACCGGGGGGGCGCCCTGCCGGGCGTGGGCCTGGAGGTG CCGGAGGAGACGCCGCGAGAGATACGGGTGGCGGCCCTGCGGGACGTGACGGACGAGGTCGCGCGGCGCACGGCGGCGCA TCTGTTTTCCACGATCGTCAACCACGCCGGCCGCGGCGTGATGGTCCTGGATGACCGGGACCGGATCGTCTACGTCAATC CGGCCTTCACGCGGCTGCTGGACTACCGGCCGGAGGATGTCGTGGGGCGCGACGTGTCCGTCATCCTCTCGCCGGATGTG GACGACCGGGCGGCGCTGGGCGAATTCCGCCGCGACCTGCATGGGCGCCGGACCTTCGGCCGCGACCTGCACGCGCGGTC GCGGTCGGGGCAGGATATCTGGATGTCCACCGCGACCAGTCCGGTGCGCGACGGCGGCGTGCTGGACGGCGGCGCGATCG TCATCCTGTCCGACGAGACCCCGGCGACGGAACTGCAGCACCTGCGGCTGGACGTGACCTCGGCGCTGGCGGGGGTCACC GGGTCCCGCGCCATGGATTTCGACGACGTCATGACGCTGATCTGCGCGCGGATCGAGGCGATCGCGCCGGGCGTCATGGC GTCGATCATCCTGCTGAGCGGGGACGGCACCGCCTGGATGGCCGGTCGTGCGGCGATGCCCGACGCCATTGCGGCGGCAT GCGACGGGTTTCCGGTCGGCCCCATGGCGGGCACATGCGGGGCCGCGATCTCTTCGGGGCAGGAGGTCCTGACCTCCGAT ATCGAAACCGACCCGAACTGGACGCCGGCGATGCGCGACCTGATGCGGCCCCTGGGGGTGGTGGCATGCTGGTCGGTGCC GATACGCCTGCGCGGCGGCACGGTCGCGGGCAGCCTGGCGCTGTATTTCCAGACTCTGCGCGAGCCGTCGCCGTGGCATC GGCGGGTGGTCGATGCCTGCATCCAGCTCTGCACCCTGGCGGTGGAGCAGGAGCGTGCCCGGGCGCAGATCGCTCATCTG GCGCATTACGACGCGGTGACCGGCCTGCCCAACCGCACGTGGCTGCGCGAGCATCTGGCGGCCCGCCAGGGGGCGGCGAA CTGGTGCGGCCTGACGCTGATGTCGGTCGACGTCAACCGCTATCGCGAAATCCGCGACGCGCTGGGGGGTGCCGCGGCGG ACGAGGTGCTGGGCGGCATGGCGAAACGGCTGCGGGCCGTGGTGGGGCAGGACGACATCCTGGTCCGTACCGGCGAGGAC GAGTTTTCCATCCTGACGGATTGCGGCCATGACGGGACGGAGCCGGAGTGCCGCGATCGCAGCGGGATGATGGCGGTCGA TCGGGCTTCGACCCTGGCGGGGGCGATCCTGCGCGCGCTGGCCAGCCCGGTCGTCGTCAACGGCATGCCGATCGGTTCGC CCATCAGCATCGGAATCTGCGCTGGCCGCGACAAGGGGCGCACGGTCGAGACGCTGCTGCGCCATACCCAGATCGCGGTG TCGCGGGCGCGTGAAGCCGGGGGCAGCCTCTATCGCTTCTTCAGCCCGGAAATGAACCGCTGGGCGCAGGACCGGGTGAT GCTGGCCTCGGCGCTGGGCGACGCGCTGGCCGATGGCCGGCTGCGGCTGGTCTATCAGCCGCAGGTGCGCTCGCGCAGCG GGGCGCTGTATGGGGTCGAGGCCCTGGCGCGCTGGCATGATCCGGAATGGGGCGACATCCCGCCCACGCGCTTCATCCCG ATGGCCGAGGAAGCCGGGCTGATCGAGGCGCTGGGGGAATGGGCGCTGCGCCAGGCCTGCCGCCAGATGGCGATCTGGAT GGCCCACGGGGTGGGGATTCCGGTCGTGTCGGTCAATCTGTCGGCCCGGCATTTCAGCGATCCGGGCCTGCCGGGCCTGA TCGGGTCCATCCTGGAGGAATCCGGCATTCCACCCGGGCGCCTGATGGTGGAAATCACCGAAAGCACGATGATCACCGAT TCCGAAACGACCATCGCCGCGGCGCGCGCGATCCGCGCTCTGGGCGTGGGCCTGTCCATGGACGATTTCGGGACCGGATT TTCCAGCCTGGCGAACCTGGTCAGCCTGCCGCTGAGCGAGGTGAAGATCGACCGGGCCTTCGTCGTCGGGCTGGAGCGGG CGGGGGATACCTATTCCATCGTGAACGCGGTGCTGCGTATCGGGCAGAGCCTGGGGGTCACGGTGGTGGCCGAGGGCGTC GAGACCCAGCGGCAGCTCGACCTGCTGGACGGCCTGGACTGCCCGGTGGTGCAGGGCTTCCTGATGTCGCGTCCCCTCGA TGCCGGAAAGGTGCCGTCCTGGCTGGAGGAATGGCACCGGTCCCGCCCCGTGCCGGAGGCGCTGCCGCGTCGGGTCGTGG GCGCATAG
Upstream 100 bases:
>100_bases ACCACGCCGGGAATAAAGAAGAGGAAAGGTGGCGATGTTCGACGGGCCGTCAACTCTTCCGGTTGTCCTGGCAGGTGTTC TGGATGCCATGCCCGGCGGC
Downstream 100 bases:
>100_bases CCCCTTCCTCCATGTCATAAAAACTTAACTGCCCCCCTGGTCCTGTCCGATTGAAGCGGGATGGGCCGAAGGCTATGGGT GGTGGGAAGAGAGACGGCAT
Product: GGDEF family signaling protein
Products: NA
Alternate protein names: Direct oxygen sensing phosphodiesterase; Direct oxygen sensor protein; Ec DOS; Heme-regulated cyclic di-GMP phosphodiesterase, [H]
Number of amino acids: Translated: 855; Mature: 855
Protein sequence:
>855_residues MVVTDADGRILFINRAAARLCGGQPEEWASRSLAVLLPDMDMTPDGTPREVRLAGRDGAALWLEVTLNRGGALPGVGLEV PEETPREIRVAALRDVTDEVARRTAAHLFSTIVNHAGRGVMVLDDRDRIVYVNPAFTRLLDYRPEDVVGRDVSVILSPDV DDRAALGEFRRDLHGRRTFGRDLHARSRSGQDIWMSTATSPVRDGGVLDGGAIVILSDETPATELQHLRLDVTSALAGVT GSRAMDFDDVMTLICARIEAIAPGVMASIILLSGDGTAWMAGRAAMPDAIAAACDGFPVGPMAGTCGAAISSGQEVLTSD IETDPNWTPAMRDLMRPLGVVACWSVPIRLRGGTVAGSLALYFQTLREPSPWHRRVVDACIQLCTLAVEQERARAQIAHL AHYDAVTGLPNRTWLREHLAARQGAANWCGLTLMSVDVNRYREIRDALGGAAADEVLGGMAKRLRAVVGQDDILVRTGED EFSILTDCGHDGTEPECRDRSGMMAVDRASTLAGAILRALASPVVVNGMPIGSPISIGICAGRDKGRTVETLLRHTQIAV SRAREAGGSLYRFFSPEMNRWAQDRVMLASALGDALADGRLRLVYQPQVRSRSGALYGVEALARWHDPEWGDIPPTRFIP MAEEAGLIEALGEWALRQACRQMAIWMAHGVGIPVVSVNLSARHFSDPGLPGLIGSILEESGIPPGRLMVEITESTMITD SETTIAAARAIRALGVGLSMDDFGTGFSSLANLVSLPLSEVKIDRAFVVGLERAGDTYSIVNAVLRIGQSLGVTVVAEGV ETQRQLDLLDGLDCPVVQGFLMSRPLDAGKVPSWLEEWHRSRPVPEALPRRVVGA
Sequences:
>Translated_855_residues MVVTDADGRILFINRAAARLCGGQPEEWASRSLAVLLPDMDMTPDGTPREVRLAGRDGAALWLEVTLNRGGALPGVGLEV PEETPREIRVAALRDVTDEVARRTAAHLFSTIVNHAGRGVMVLDDRDRIVYVNPAFTRLLDYRPEDVVGRDVSVILSPDV DDRAALGEFRRDLHGRRTFGRDLHARSRSGQDIWMSTATSPVRDGGVLDGGAIVILSDETPATELQHLRLDVTSALAGVT GSRAMDFDDVMTLICARIEAIAPGVMASIILLSGDGTAWMAGRAAMPDAIAAACDGFPVGPMAGTCGAAISSGQEVLTSD IETDPNWTPAMRDLMRPLGVVACWSVPIRLRGGTVAGSLALYFQTLREPSPWHRRVVDACIQLCTLAVEQERARAQIAHL AHYDAVTGLPNRTWLREHLAARQGAANWCGLTLMSVDVNRYREIRDALGGAAADEVLGGMAKRLRAVVGQDDILVRTGED EFSILTDCGHDGTEPECRDRSGMMAVDRASTLAGAILRALASPVVVNGMPIGSPISIGICAGRDKGRTVETLLRHTQIAV SRAREAGGSLYRFFSPEMNRWAQDRVMLASALGDALADGRLRLVYQPQVRSRSGALYGVEALARWHDPEWGDIPPTRFIP MAEEAGLIEALGEWALRQACRQMAIWMAHGVGIPVVSVNLSARHFSDPGLPGLIGSILEESGIPPGRLMVEITESTMITD SETTIAAARAIRALGVGLSMDDFGTGFSSLANLVSLPLSEVKIDRAFVVGLERAGDTYSIVNAVLRIGQSLGVTVVAEGV ETQRQLDLLDGLDCPVVQGFLMSRPLDAGKVPSWLEEWHRSRPVPEALPRRVVGA >Mature_855_residues MVVTDADGRILFINRAAARLCGGQPEEWASRSLAVLLPDMDMTPDGTPREVRLAGRDGAALWLEVTLNRGGALPGVGLEV PEETPREIRVAALRDVTDEVARRTAAHLFSTIVNHAGRGVMVLDDRDRIVYVNPAFTRLLDYRPEDVVGRDVSVILSPDV DDRAALGEFRRDLHGRRTFGRDLHARSRSGQDIWMSTATSPVRDGGVLDGGAIVILSDETPATELQHLRLDVTSALAGVT GSRAMDFDDVMTLICARIEAIAPGVMASIILLSGDGTAWMAGRAAMPDAIAAACDGFPVGPMAGTCGAAISSGQEVLTSD IETDPNWTPAMRDLMRPLGVVACWSVPIRLRGGTVAGSLALYFQTLREPSPWHRRVVDACIQLCTLAVEQERARAQIAHL AHYDAVTGLPNRTWLREHLAARQGAANWCGLTLMSVDVNRYREIRDALGGAAADEVLGGMAKRLRAVVGQDDILVRTGED EFSILTDCGHDGTEPECRDRSGMMAVDRASTLAGAILRALASPVVVNGMPIGSPISIGICAGRDKGRTVETLLRHTQIAV SRAREAGGSLYRFFSPEMNRWAQDRVMLASALGDALADGRLRLVYQPQVRSRSGALYGVEALARWHDPEWGDIPPTRFIP MAEEAGLIEALGEWALRQACRQMAIWMAHGVGIPVVSVNLSARHFSDPGLPGLIGSILEESGIPPGRLMVEITESTMITD SETTIAAARAIRALGVGLSMDDFGTGFSSLANLVSLPLSEVKIDRAFVVGLERAGDTYSIVNAVLRIGQSLGVTVVAEGV ETQRQLDLLDGLDCPVVQGFLMSRPLDAGKVPSWLEEWHRSRPVPEALPRRVVGA
Specific function: In association with DosC is involved in the production and removal of the second messenger c-di-GMP in response to changing O(2) levels. Has phosphodiesterase (PDE) activity with c- di-GMP (PubMed:15995192), very poor activity on cAMP (PubMed:15995192) bu
COG id: COG2200
COG function: function code T; FOG: EAL domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]
Homologues:
Organism=Escherichia coli, GI87081921, Length=854, Percent_Identity=31.4988290398126, Blast_Score=416, Evalue=1e-117, Organism=Escherichia coli, GI1787541, Length=450, Percent_Identity=30.6666666666667, Blast_Score=236, Evalue=5e-63, Organism=Escherichia coli, GI226510982, Length=436, Percent_Identity=31.1926605504587, Blast_Score=178, Evalue=1e-45, Organism=Escherichia coli, GI87081845, Length=252, Percent_Identity=32.5396825396825, Blast_Score=134, Evalue=2e-32, Organism=Escherichia coli, GI1790496, Length=258, Percent_Identity=30.2325581395349, Blast_Score=131, Evalue=2e-31, Organism=Escherichia coli, GI87081980, Length=255, Percent_Identity=32.5490196078431, Blast_Score=126, Evalue=7e-30, Organism=Escherichia coli, GI1786507, Length=277, Percent_Identity=29.9638989169675, Blast_Score=124, Evalue=2e-29, Organism=Escherichia coli, GI1787055, Length=276, Percent_Identity=29.7101449275362, Blast_Score=120, Evalue=3e-28, Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=30.8943089430894, Blast_Score=116, Evalue=7e-27, Organism=Escherichia coli, GI1788502, Length=244, Percent_Identity=31.1475409836066, Blast_Score=112, Evalue=7e-26, Organism=Escherichia coli, GI1788849, Length=303, Percent_Identity=26.0726072607261, Blast_Score=100, Evalue=3e-22, Organism=Escherichia coli, GI87082096, Length=250, Percent_Identity=28.8, Blast_Score=98, Evalue=2e-21, Organism=Escherichia coli, GI87081881, Length=197, Percent_Identity=28.9340101522843, Blast_Score=71, Evalue=3e-13, Organism=Escherichia coli, GI1787410, Length=167, Percent_Identity=25.1497005988024, Blast_Score=70, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR012226 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013656 - InterPro: IPR013767 [H]
Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF00989 PAS; PF08448 PAS_4 [H]
EC number: =3.1.4.52 [H]
Molecular weight: Translated: 91967; Mature: 91967
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVVTDADGRILFINRAAARLCGGQPEEWASRSLAVLLPDMDMTPDGTPREVRLAGRDGAA CEEECCCCCEEEEEHHHHHHHCCCCHHHHCCCEEEEECCCCCCCCCCCCEEEEECCCCCE LWLEVTLNRGGALPGVGLEVPEETPREIRVAALRDVTDEVARRTAAHLFSTIVNHAGRGV EEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE MVLDDRDRIVYVNPAFTRLLDYRPEDVVGRDVSVILSPDVDDRAALGEFRRDLHGRRTFG EEEECCCCEEEECHHHHHHHCCCCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHC RDLHARSRSGQDIWMSTATSPVRDGGVLDGGAIVILSDETPATELQHLRLDVTSALAGVT CHHHHHCCCCCEEEEECCCCCCCCCCEECCCEEEEECCCCCHHHHHHHHHHHHHHHHCCC GSRAMDFDDVMTLICARIEAIAPGVMASIILLSGDGTAWMAGRAAMPDAIAAACDGFPVG CCCCCCHHHHHHHHHHHHHHHCCCHHEEEEEECCCCCEEECCCCCCCHHHHHHCCCCCCC PMAGTCGAAISSGQEVLTSDIETDPNWTPAMRDLMRPLGVVACWSVPIRLRGGTVAGSLA CCCCHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHEEEEECCCEEEECCCHHHHHH LYFQTLREPSPWHRRVVDACIQLCTLAVEQERARAQIAHLAHYDAVTGLPNRTWLREHLA HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH ARQGAANWCGLTLMSVDVNRYREIRDALGGAAADEVLGGMAKRLRAVVGQDDILVRTGED HHCCCCCHHCEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC EFSILTDCGHDGTEPECRDRSGMMAVDRASTLAGAILRALASPVVVNGMPIGSPISIGIC CEEHEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEE AGRDKGRTVETLLRHTQIAVSRAREAGGSLYRFFSPEMNRWAQDRVMLASALGDALADGR CCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC LRLVYQPQVRSRSGALYGVEALARWHDPEWGDIPPTRFIPMAEEAGLIEALGEWALRQAC EEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHH RQMAIWMAHGVGIPVVSVNLSARHFSDPGLPGLIGSILEESGIPPGRLMVEITESTMITD HHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCEEEEC SETTIAAARAIRALGVGLSMDDFGTGFSSLANLVSLPLSEVKIDRAFVVGLERAGDTYSI CCHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCHHHHHHCHHEEEEECCCCCHHHH VNAVLRIGQSLGVTVVAEGVETQRQLDLLDGLDCPVVQGFLMSRPLDAGKVPSWLEEWHR HHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHH SRPVPEALPRRVVGA CCCCHHHHHHHHCCC >Mature Secondary Structure MVVTDADGRILFINRAAARLCGGQPEEWASRSLAVLLPDMDMTPDGTPREVRLAGRDGAA CEEECCCCCEEEEEHHHHHHHCCCCHHHHCCCEEEEECCCCCCCCCCCCEEEEECCCCCE LWLEVTLNRGGALPGVGLEVPEETPREIRVAALRDVTDEVARRTAAHLFSTIVNHAGRGV EEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE MVLDDRDRIVYVNPAFTRLLDYRPEDVVGRDVSVILSPDVDDRAALGEFRRDLHGRRTFG EEEECCCCEEEECHHHHHHHCCCCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHC RDLHARSRSGQDIWMSTATSPVRDGGVLDGGAIVILSDETPATELQHLRLDVTSALAGVT CHHHHHCCCCCEEEEECCCCCCCCCCEECCCEEEEECCCCCHHHHHHHHHHHHHHHHCCC GSRAMDFDDVMTLICARIEAIAPGVMASIILLSGDGTAWMAGRAAMPDAIAAACDGFPVG CCCCCCHHHHHHHHHHHHHHHCCCHHEEEEEECCCCCEEECCCCCCCHHHHHHCCCCCCC PMAGTCGAAISSGQEVLTSDIETDPNWTPAMRDLMRPLGVVACWSVPIRLRGGTVAGSLA CCCCHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHEEEEECCCEEEECCCHHHHHH LYFQTLREPSPWHRRVVDACIQLCTLAVEQERARAQIAHLAHYDAVTGLPNRTWLREHLA HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH ARQGAANWCGLTLMSVDVNRYREIRDALGGAAADEVLGGMAKRLRAVVGQDDILVRTGED HHCCCCCHHCEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC EFSILTDCGHDGTEPECRDRSGMMAVDRASTLAGAILRALASPVVVNGMPIGSPISIGIC CEEHEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEE AGRDKGRTVETLLRHTQIAVSRAREAGGSLYRFFSPEMNRWAQDRVMLASALGDALADGR CCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC LRLVYQPQVRSRSGALYGVEALARWHDPEWGDIPPTRFIPMAEEAGLIEALGEWALRQAC EEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHH RQMAIWMAHGVGIPVVSVNLSARHFSDPGLPGLIGSILEESGIPPGRLMVEITESTMITD HHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCEEEEC SETTIAAARAIRALGVGLSMDDFGTGFSSLANLVSLPLSEVKIDRAFVVGLERAGDTYSI CCHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCHHHHHHCHHEEEEECCCCCHHHH VNAVLRIGQSLGVTVVAEGVETQRQLDLLDGLDCPVVQGFLMSRPLDAGKVPSWLEEWHR HHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHH SRPVPEALPRRVVGA CCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]