Click here to switch to the map view.

The map label for this gene is yjiR [C]

Identifier: 162149503

GI number: 162149503

Start: 3823220

End: 3824623

Strand: Direct

Name: yjiR [C]

Synonym: GDI_3741

Alternate gene names: 162149503

Gene position: 3823220-3824623 (Clockwise)

Preceding gene: 162149502

Following gene: 162149504

Centisome position: 96.93

GC content: 70.09

Gene sequence:

>1404_bases
ATGCTCGACAAGCCTTACCTTGCTCGCTGGAAGGAGCAGATCGACCATAGTGCGGGGGCGATCTATCTGACGCTGGTCGA
TGCGCTGGCGCTGTCGATACGGCGGGGGGATCTGCGGGAGGGGGATCGGCTGCCGCCGCAGCGGGTCATCGCCGATTTTC
TGGGGACCAACCTGACGACCGTGACCCGGGCGTTTACCGAGGCGCGGCGGCGGGGGCTGGTCGATGCCACGGTCGGGCGA
GGGACGTTCGTGCGGGTGGGGGCGGGCGAGAGCCACTGGCGGCATACCGGGCCGGCGGTGGTGGACCTGACCATGAACCT
GCCGCCCATTCCGCAGGACCCGCCGCTGCAACGGATGATCCAGGGCGACATCGCCGCGATCCTGAAGCAGCAGGACCTGA
ACAGCCTGATGTCCTACCGGGTGACCGGCGGCACCATAGAGGAGCGCCAGCTTGGCGCGAAATGGATCGCGCCCGCGGTC
GGGCCGCGCCGGGTGGATGAAATCCTGGTCTCGCCCGGGGCGCAGACTGCGCTGGCCGCCATCGTCAGCACGCTGGCCCA
GCCCGGCGACGTGATCGTGACCGACCGTATCGCCTATCCCGGCATCCGCACCATCGCCGCCCAGTTCGGCCTGATCCTGG
CGGGGGTGGACAGCGACGGCGAGGGGATGGTGCCCGACCTGCTGGACCGTGCCTGCGCGCAGCATCATCCCCGCTTGCTC
TATTGCATTCCCACCATCCACAACCCTACCACCGCGACCATGTCGCTGCAGCGCCGCCGGGACATCCTGGCCGTGGCGCA
ACGCCACCATTTGCATGTGGTGGAGGACGACCCGTACAGCCTGCTGATGGACGGCGCGCCGCCGGCGCTGGCGGCGCTGG
ACCATGCCCGCGTCAGCTATGTCGCGACCCTGGCCAAGACCCTGAGCCCCGGCCTGCGCACCGCCTATGTCTGCCTGCCC
AGCGCGGACATGACCCGCCGCGTCACGGCGGCGATCCGGGCCATCGCGCTGACCAATGCCGGGCTGCTGGGCGCGCTGAC
GGCCCGCTGGATGCAGACCGGGCAGGCGGGGCAGATCCTGGATGCCATCAGGCGGGAACTGCGCCTGCGCCAGGCGATCG
CCCGCACGGTGTTGGGCGAGGGGCACTGCATGAACCCCGAGGGCCCGCATGTGTGGCTGAAACTGCCGGACTGGTGGGGC
AGCGCGGATTTCGTGGCCTATGCCCGTCGCCGGGGCCTGGCGCTGGTGCCCAGCACCGTCTTCACCATCAGCGGGGACCC
GCCGCAGCGGGTGCGGATCGCGCTGGGAAGCGCCGCCGACGCCGGAAGCCTGGAGGAATCGCTGCGCGGGGTCGTGTCCG
TGCTCCAGCACAAGCGGTCGCCGGGGTTCGCGGATATTGTCTGA

Upstream 100 bases:

>100_bases
TGCCTTCCGGGGGGGCATGCAATGTTGTGAATGGATTGTATGTATTGTACGGAGAGCGGCGTAAACAATCCTCGTTCCCT
CATGGATATCGGCCGGCCTT

Downstream 100 bases:

>100_bases
AGCGGTTGCAAAAACAAAAACGCGTGGTGATCACGAAAGCGTGATAAATAAGCGACTATAAAACAGAGGGTTATGGCGCC
TGCCGGAGATTGTATCCCTC

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MLDKPYLARWKEQIDHSAGAIYLTLVDALALSIRRGDLREGDRLPPQRVIADFLGTNLTTVTRAFTEARRRGLVDATVGR
GTFVRVGAGESHWRHTGPAVVDLTMNLPPIPQDPPLQRMIQGDIAAILKQQDLNSLMSYRVTGGTIEERQLGAKWIAPAV
GPRRVDEILVSPGAQTALAAIVSTLAQPGDVIVTDRIAYPGIRTIAAQFGLILAGVDSDGEGMVPDLLDRACAQHHPRLL
YCIPTIHNPTTATMSLQRRRDILAVAQRHHLHVVEDDPYSLLMDGAPPALAALDHARVSYVATLAKTLSPGLRTAYVCLP
SADMTRRVTAAIRAIALTNAGLLGALTARWMQTGQAGQILDAIRRELRLRQAIARTVLGEGHCMNPEGPHVWLKLPDWWG
SADFVAYARRRGLALVPSTVFTISGDPPQRVRIALGSAADAGSLEESLRGVVSVLQHKRSPGFADIV

Sequences:

>Translated_467_residues
MLDKPYLARWKEQIDHSAGAIYLTLVDALALSIRRGDLREGDRLPPQRVIADFLGTNLTTVTRAFTEARRRGLVDATVGR
GTFVRVGAGESHWRHTGPAVVDLTMNLPPIPQDPPLQRMIQGDIAAILKQQDLNSLMSYRVTGGTIEERQLGAKWIAPAV
GPRRVDEILVSPGAQTALAAIVSTLAQPGDVIVTDRIAYPGIRTIAAQFGLILAGVDSDGEGMVPDLLDRACAQHHPRLL
YCIPTIHNPTTATMSLQRRRDILAVAQRHHLHVVEDDPYSLLMDGAPPALAALDHARVSYVATLAKTLSPGLRTAYVCLP
SADMTRRVTAAIRAIALTNAGLLGALTARWMQTGQAGQILDAIRRELRLRQAIARTVLGEGHCMNPEGPHVWLKLPDWWG
SADFVAYARRRGLALVPSTVFTISGDPPQRVRIALGSAADAGSLEESLRGVVSVLQHKRSPGFADIV
>Mature_467_residues
MLDKPYLARWKEQIDHSAGAIYLTLVDALALSIRRGDLREGDRLPPQRVIADFLGTNLTTVTRAFTEARRRGLVDATVGR
GTFVRVGAGESHWRHTGPAVVDLTMNLPPIPQDPPLQRMIQGDIAAILKQQDLNSLMSYRVTGGTIEERQLGAKWIAPAV
GPRRVDEILVSPGAQTALAAIVSTLAQPGDVIVTDRIAYPGIRTIAAQFGLILAGVDSDGEGMVPDLLDRACAQHHPRLL
YCIPTIHNPTTATMSLQRRRDILAVAQRHHLHVVEDDPYSLLMDGAPPALAALDHARVSYVATLAKTLSPGLRTAYVCLP
SADMTRRVTAAIRAIALTNAGLLGALTARWMQTGQAGQILDAIRRELRLRQAIARTVLGEGHCMNPEGPHVWLKLPDWWG
SADFVAYARRRGLALVPSTVFTISGDPPQRVRIALGSAADAGSLEESLRGVVSVLQHKRSPGFADIV

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=299, Percent_Identity=24.4147157190635, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI33469970, Length=299, Percent_Identity=24.4147157190635, Blast_Score=90, Evalue=4e-18,
Organism=Escherichia coli, GI1790797, Length=451, Percent_Identity=22.3946784922395, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787710, Length=458, Percent_Identity=23.1441048034935, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50592; Mature: 50592

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDKPYLARWKEQIDHSAGAIYLTLVDALALSIRRGDLREGDRLPPQRVIADFLGTNLTT
CCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHH
VTRAFTEARRRGLVDATVGRGTFVRVGAGESHWRHTGPAVVDLTMNLPPIPQDPPLQRMI
HHHHHHHHHHCCCCEEECCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHH
QGDIAAILKQQDLNSLMSYRVTGGTIEERQLGAKWIAPAVGPRRVDEILVSPGAQTALAA
HHHHHHHHHHHHHHHHHHEECCCCCCHHHHCCCHHHCCCCCHHHHHHHHCCCCHHHHHHH
IVSTLAQPGDVIVTDRIAYPGIRTIAAQFGLILAGVDSDGEGMVPDLLDRACAQHHPRLL
HHHHHCCCCCEEEECCCCCCCHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHCCEEE
YCIPTIHNPTTATMSLQRRRDILAVAQRHHLHVVEDDPYSLLMDGAPPALAALDHARVSY
EEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCHHHHHHHHHHHHH
VATLAKTLSPGLRTAYVCLPSADMTRRVTAAIRAIALTNAGLLGALTARWMQTGQAGQIL
HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
DAIRRELRLRQAIARTVLGEGHCMNPEGPHVWLKLPDWWGSADFVAYARRRGLALVPSTV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEECCEE
FTISGDPPQRVRIALGSAADAGSLEESLRGVVSVLQHKRSPGFADIV
EEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLDKPYLARWKEQIDHSAGAIYLTLVDALALSIRRGDLREGDRLPPQRVIADFLGTNLTT
CCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHH
VTRAFTEARRRGLVDATVGRGTFVRVGAGESHWRHTGPAVVDLTMNLPPIPQDPPLQRMI
HHHHHHHHHHCCCCEEECCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHH
QGDIAAILKQQDLNSLMSYRVTGGTIEERQLGAKWIAPAVGPRRVDEILVSPGAQTALAA
HHHHHHHHHHHHHHHHHHEECCCCCCHHHHCCCHHHCCCCCHHHHHHHHCCCCHHHHHHH
IVSTLAQPGDVIVTDRIAYPGIRTIAAQFGLILAGVDSDGEGMVPDLLDRACAQHHPRLL
HHHHHCCCCCEEEECCCCCCCHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHCCEEE
YCIPTIHNPTTATMSLQRRRDILAVAQRHHLHVVEDDPYSLLMDGAPPALAALDHARVSY
EEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCHHHHHHHHHHHHH
VATLAKTLSPGLRTAYVCLPSADMTRRVTAAIRAIALTNAGLLGALTARWMQTGQAGQIL
HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
DAIRRELRLRQAIARTVLGEGHCMNPEGPHVWLKLPDWWGSADFVAYARRRGLALVPSTV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEECCEE
FTISGDPPQRVRIALGSAADAGSLEESLRGVVSVLQHKRSPGFADIV
EEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]