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The map label for this gene is oprB [H]

Identifier: 162149405

GI number: 162149405

Start: 3722360

End: 3723868

Strand: Direct

Name: oprB [H]

Synonym: GDI_3643

Alternate gene names: 162149405

Gene position: 3722360-3723868 (Clockwise)

Preceding gene: 162149403

Following gene: 162149406

Centisome position: 94.38

GC content: 64.48

Gene sequence:

>1509_bases
ATGTCGCAGCGGCCGGCCCCCCTGCTTCCCACTGCGTCACGTCGTGCCCGGGTTCCCTGGACGGCGCGTGCGATCGTCGC
GGCGGGCTGCCTGGCGCTGGGCGCCTTTTCGGTCACGCGGGCGCATGCCGTCCCGCCGACGATCAATCTGGGCAACGCGG
CCGAGGCCGAGGACGATGCGTCGTCGGGCGTCTTCGGCTTTCTGTCCAACTGGCGCCGCTCGGCGAATTTCCTGGGTAAC
ATGTGGGGACTGCGCCCCGAACTGGGCAAATACGGCGCCGTCCTGGCCGTGCAGGAAACGTCGGAGGTCTTCGGCAACGC
CACGGGCGGCAACCGTCGCGGGGTCGATTATGACGGCCTGACCCAAGCCGTGCTGCAGATCAACACCCAGCGTGCCTTCG
GCTGGTACGGCGGCACGTTCAACGTCAGCATGGAACAGATCCACGGCCGCAGCCTCAGCCAGGACAATCTGCAGGCGCTC
CAGACCATCAGCGGCATCGAGGCCGACCGGTCCACGCGGCTGTGGGAATTGTGGTTCGACCAGAAATTCCTCGACCAGCA
GCAGCTCGACATCAAGATCGGCCAGCAGAGCCTCGACCAGGAATACATGATCAGCAGCAACGCGCTGATCTTCGCCAACA
CCATGTTCGGATGGCCCATGGTGCCGTCGGCCGACCTGCCGGGCGGCGGTCCGGCCTATCCGCTTTCGGCGCTGGGCGTG
CGCGGGAAATACTGGCTGGCGACCCCGCTCTATGTGCTGGGCGGGGTCTATAGCGGTAGCCCCACCCGCGCGCTGTCGGG
CGATCCGCAGCAGACGAACGCGTCCGGCACCAGTTTCCCGCTCGATCGCGGCGTCATGGCGATCGCGGAAATCCAGTATG
TCTATCCCGCGCTGGGCGCCATGGTCTCGCCGGATGACGAGCAGCCGCTGTCGCATGTCTATCGCCTGGGCGGGTGGTAC
GATTCCGAACCGTTCGCCGACCAGTATTACGACAATACCGGAACGCCCCTCGCATCGCCGGCCAGCAACGGTACGCCTGT
GAATCATCGCGGTGCCTTCAGCTTCTATGCGGTGATGGACCAGATGCTATGGCGCAGCCATGTGGACCCCAACCGCACGA
TCAACATGTTCGGCCGCGCCATGGGCACGCCGCAGGCCGATCGCGTGCCGGTCGATTTCAGCCTGAACTACGGCGTGACG
ATGAAGGACCCGTTTCCTTATCGAACCGACGACACGTTCGGGCTCGCCATGGGTTACACCCATGTCAGCAGCGCGCTGGC
GCGCTATGACCGTGCGGTCCACCAGTATACGGGCGTCTATTCCCCGCCGCAGGGCGGCGAGACCTATGTCGAGGCGACAT
ACCAGTACCAGTTCACCGGGTGGATGCAGTGGCAGCCGGATTTCCAATACATCTTCAATCCTGGCGGCGGCATCCCGAAT
CCTTCCCATCCCGACCACCATATCCATAACGAGCTGGTGCTCGGCTTTCGCACCAACATTGCGCTTTGA

Upstream 100 bases:

>100_bases
CCGCATGGCTTCAGACATATTTTAATGCAAATCAATTGCAATTCGGATTGAAATCGCTATTGATAATAAATCGCATCAAC
GGTTTCCCACAAGGAATGTC

Downstream 100 bases:

>100_bases
GTTTTGATCATGCAGCCATTCATCACACGCTTTCTCATGGGCGCGGCGTTCCTTGCCGCGCTGGCGCCGGCCGCGGCCCA
TGCCGGGCCGAAGGGGTTCC

Product: carbohydrate-selective porin

Products: NA

Alternate protein names: Glucose porin; Outer membrane protein D1 [H]

Number of amino acids: Translated: 502; Mature: 501

Protein sequence:

>502_residues
MSQRPAPLLPTASRRARVPWTARAIVAAGCLALGAFSVTRAHAVPPTINLGNAAEAEDDASSGVFGFLSNWRRSANFLGN
MWGLRPELGKYGAVLAVQETSEVFGNATGGNRRGVDYDGLTQAVLQINTQRAFGWYGGTFNVSMEQIHGRSLSQDNLQAL
QTISGIEADRSTRLWELWFDQKFLDQQQLDIKIGQQSLDQEYMISSNALIFANTMFGWPMVPSADLPGGGPAYPLSALGV
RGKYWLATPLYVLGGVYSGSPTRALSGDPQQTNASGTSFPLDRGVMAIAEIQYVYPALGAMVSPDDEQPLSHVYRLGGWY
DSEPFADQYYDNTGTPLASPASNGTPVNHRGAFSFYAVMDQMLWRSHVDPNRTINMFGRAMGTPQADRVPVDFSLNYGVT
MKDPFPYRTDDTFGLAMGYTHVSSALARYDRAVHQYTGVYSPPQGGETYVEATYQYQFTGWMQWQPDFQYIFNPGGGIPN
PSHPDHHIHNELVLGFRTNIAL

Sequences:

>Translated_502_residues
MSQRPAPLLPTASRRARVPWTARAIVAAGCLALGAFSVTRAHAVPPTINLGNAAEAEDDASSGVFGFLSNWRRSANFLGN
MWGLRPELGKYGAVLAVQETSEVFGNATGGNRRGVDYDGLTQAVLQINTQRAFGWYGGTFNVSMEQIHGRSLSQDNLQAL
QTISGIEADRSTRLWELWFDQKFLDQQQLDIKIGQQSLDQEYMISSNALIFANTMFGWPMVPSADLPGGGPAYPLSALGV
RGKYWLATPLYVLGGVYSGSPTRALSGDPQQTNASGTSFPLDRGVMAIAEIQYVYPALGAMVSPDDEQPLSHVYRLGGWY
DSEPFADQYYDNTGTPLASPASNGTPVNHRGAFSFYAVMDQMLWRSHVDPNRTINMFGRAMGTPQADRVPVDFSLNYGVT
MKDPFPYRTDDTFGLAMGYTHVSSALARYDRAVHQYTGVYSPPQGGETYVEATYQYQFTGWMQWQPDFQYIFNPGGGIPN
PSHPDHHIHNELVLGFRTNIAL
>Mature_501_residues
SQRPAPLLPTASRRARVPWTARAIVAAGCLALGAFSVTRAHAVPPTINLGNAAEAEDDASSGVFGFLSNWRRSANFLGNM
WGLRPELGKYGAVLAVQETSEVFGNATGGNRRGVDYDGLTQAVLQINTQRAFGWYGGTFNVSMEQIHGRSLSQDNLQALQ
TISGIEADRSTRLWELWFDQKFLDQQQLDIKIGQQSLDQEYMISSNALIFANTMFGWPMVPSADLPGGGPAYPLSALGVR
GKYWLATPLYVLGGVYSGSPTRALSGDPQQTNASGTSFPLDRGVMAIAEIQYVYPALGAMVSPDDEQPLSHVYRLGGWYD
SEPFADQYYDNTGTPLASPASNGTPVNHRGAFSFYAVMDQMLWRSHVDPNRTINMFGRAMGTPQADRVPVDFSLNYGVTM
KDPFPYRTDDTFGLAMGYTHVSSALARYDRAVHQYTGVYSPPQGGETYVEATYQYQFTGWMQWQPDFQYIFNPGGGIPNP
SHPDHHIHNELVLGFRTNIAL

Specific function: Substrate-selective channel for a variety of different sugars. Could potentially facilitate the diffusion of diverse compounds, dependent on the presence of a hydroxyl group, but is presumably restricted to carbohydrates. Involved in the transport of gluc

COG id: COG3659

COG function: function code M; Carbohydrate-selective porin

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007049 [H]

Pfam domain/function: PF04966 OprB [H]

EC number: NA

Molecular weight: Translated: 55164; Mature: 55033

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQRPAPLLPTASRRARVPWTARAIVAAGCLALGAFSVTRAHAVPPTINLGNAAEAEDDA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
SSGVFGFLSNWRRSANFLGNMWGLRPELGKYGAVLAVQETSEVFGNATGGNRRGVDYDGL
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHCCCCCCCCCCCCHHHH
TQAVLQINTQRAFGWYGGTFNVSMEQIHGRSLSQDNLQALQTISGIEADRSTRLWELWFD
HHHHHHCCCCCEEEEECCEEEEEHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEHHC
QKFLDQQQLDIKIGQQSLDQEYMISSNALIFANTMFGWPMVPSADLPGGGPAYPLSALGV
HHHHCCHHHHEEECHHHCCHHHEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCC
RGKYWLATPLYVLGGVYSGSPTRALSGDPQQTNASGTSFPLDRGVMAIAEIQYVYPALGA
CCCEEHHCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHCC
MVSPDDEQPLSHVYRLGGWYDSEPFADQYYDNTGTPLASPASNGTPVNHRGAFSFYAVMD
CCCCCCCCHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
QMLWRSHVDPNRTINMFGRAMGTPQADRVPVDFSLNYGVTMKDPFPYRTDDTFGLAMGYT
HHHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCEEHHHHH
HVSSALARYDRAVHQYTGVYSPPQGGETYVEATYQYQFTGWMQWQPDFQYIFNPGGGIPN
HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEECCCCCCCC
PSHPDHHIHNELVLGFRTNIAL
CCCCCCCCCCCEEEEEECCCCC
>Mature Secondary Structure 
SQRPAPLLPTASRRARVPWTARAIVAAGCLALGAFSVTRAHAVPPTINLGNAAEAEDDA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
SSGVFGFLSNWRRSANFLGNMWGLRPELGKYGAVLAVQETSEVFGNATGGNRRGVDYDGL
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHCCCCCCCCCCCCHHHH
TQAVLQINTQRAFGWYGGTFNVSMEQIHGRSLSQDNLQALQTISGIEADRSTRLWELWFD
HHHHHHCCCCCEEEEECCEEEEEHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEHHC
QKFLDQQQLDIKIGQQSLDQEYMISSNALIFANTMFGWPMVPSADLPGGGPAYPLSALGV
HHHHCCHHHHEEECHHHCCHHHEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCC
RGKYWLATPLYVLGGVYSGSPTRALSGDPQQTNASGTSFPLDRGVMAIAEIQYVYPALGA
CCCEEHHCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHCC
MVSPDDEQPLSHVYRLGGWYDSEPFADQYYDNTGTPLASPASNGTPVNHRGAFSFYAVMD
CCCCCCCCHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
QMLWRSHVDPNRTINMFGRAMGTPQADRVPVDFSLNYGVTMKDPFPYRTDDTFGLAMGYT
HHHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCEEHHHHH
HVSSALARYDRAVHQYTGVYSPPQGGETYVEATYQYQFTGWMQWQPDFQYIFNPGGGIPN
HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEECCCCCCCC
PSHPDHHIHNELVLGFRTNIAL
CCCCCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8125108; 10984043; 2450582; 8132494; 7768797 [H]