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The map label for this gene is insF1 [H]

Identifier: 162146798

GI number: 162146798

Start: 997143

End: 998021

Strand: Reverse

Name: insF1 [H]

Synonym: GDI_0980

Alternate gene names: 162146798

Gene position: 998021-997143 (Counterclockwise)

Preceding gene: 162146799

Following gene: 162146797

Centisome position: 25.3

GC content: 61.43

Gene sequence:

>879_bases
ATGATCGACCTGAAGCGGCCTCGGCTTTCCGTGGTGCGGCAATGCGCGCTGCTGCAGCTCAACCGGTCGTCCGTGTATTA
CCGGCCGGTGCCGGAGAGTGAGGGCAATCTTGAACTGATGCGGCTGATCGACGCGCAGTTTCTTGAGACACCCTATTACG
GGTCGCGGCAGATGACCCGGCATCTCAGGCGGCTCGGCCATGATGTCGGGCGCAAGCGTGTCCGTCGGCTGATGGCGACG
ATGGGGCTGCGGGCGATCTATCAGAAGCCGCACACGACGATACCGCATCCTGGGCATCGCAAATATCCGTATTTGCTGCG
GGATCTGGTGATCGATCGCCCCAATCAGGTGTGGTGCTCGGACATCACCTATATCCCGATGCGAAAGGGTTTTCTGTATC
TCGTGGCGATCATGGACTGGTCGACGCGCAAGGTTCTGGCCTGGCGGCTGTCGAACACGATGGATGCCGAGTTCTGCATC
GAGGCGCTACAGGAGGCCCTGATCCGCTACGGCGCACCGGAGATCTTCAACACGGATCAGGGGTCACAATTCACGACGCC
CCGGTTCACGGACGTGCTGCAAGCGCGCCAGATCCGCATCAGCATGGACGGGCGCGGCCGATGGCTCGACAACGTGTTCA
TCGAGCGCCTGTGGCGATCCCTGAAATACGAATGCGTCTACCTGCACGCGTTCGAGACCGGTTCGGAACTGCGGGCCGGG
CTCATTTCATGGATCGCGCATTACAACGGGCAGCGTCCTCATTCGGCTTTGGCTGGACGCACGCCCGATGAGGCGTATCA
TAACGCGCCGGCGCCATTGGGTCCGGGGTTAACCCCGGACCCAATGGCCAACAGCAACACCGTCAACCTGGCGGCATGA

Upstream 100 bases:

>100_bases
CCGACGTGGAGAAACTTCACGCAAAGATTGGCCAATTGCTGGTGGAACGGGATTTTTTGCGGGATGCCTCTGTGCGGTTG
GGCGTGCTCAGAGGCGGCAA

Downstream 100 bases:

>100_bases
CAACAACCGGCTATAGCTTATCAGGCCCGTAAAGCTGTCCGACGTGTAGAAGTCTCGACTAAATCTGACGGATGGTGTCT
GCTGAAGCTCAACCAGGGCT

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MIDLKRPRLSVVRQCALLQLNRSSVYYRPVPESEGNLELMRLIDAQFLETPYYGSRQMTRHLRRLGHDVGRKRVRRLMAT
MGLRAIYQKPHTTIPHPGHRKYPYLLRDLVIDRPNQVWCSDITYIPMRKGFLYLVAIMDWSTRKVLAWRLSNTMDAEFCI
EALQEALIRYGAPEIFNTDQGSQFTTPRFTDVLQARQIRISMDGRGRWLDNVFIERLWRSLKYECVYLHAFETGSELRAG
LISWIAHYNGQRPHSALAGRTPDEAYHNAPAPLGPGLTPDPMANSNTVNLAA

Sequences:

>Translated_292_residues
MIDLKRPRLSVVRQCALLQLNRSSVYYRPVPESEGNLELMRLIDAQFLETPYYGSRQMTRHLRRLGHDVGRKRVRRLMAT
MGLRAIYQKPHTTIPHPGHRKYPYLLRDLVIDRPNQVWCSDITYIPMRKGFLYLVAIMDWSTRKVLAWRLSNTMDAEFCI
EALQEALIRYGAPEIFNTDQGSQFTTPRFTDVLQARQIRISMDGRGRWLDNVFIERLWRSLKYECVYLHAFETGSELRAG
LISWIAHYNGQRPHSALAGRTPDEAYHNAPAPLGPGLTPDPMANSNTVNLAA
>Mature_292_residues
MIDLKRPRLSVVRQCALLQLNRSSVYYRPVPESEGNLELMRLIDAQFLETPYYGSRQMTRHLRRLGHDVGRKRVRRLMAT
MGLRAIYQKPHTTIPHPGHRKYPYLLRDLVIDRPNQVWCSDITYIPMRKGFLYLVAIMDWSTRKVLAWRLSNTMDAEFCI
EALQEALIRYGAPEIFNTDQGSQFTTPRFTDVLQARQIRISMDGRGRWLDNVFIERLWRSLKYECVYLHAFETGSELRAG
LISWIAHYNGQRPHSALAGRTPDEAYHNAPAPLGPGLTPDPMANSNTVNLAA

Specific function: Involved in the transposition of the insertion sequence IS3 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=250, Percent_Identity=28.4, Blast_Score=99, Evalue=3e-21,
Organism=Escherichia coli, GI1788405, Length=277, Percent_Identity=28.8808664259928, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787263, Length=277, Percent_Identity=28.8808664259928, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1786753, Length=277, Percent_Identity=28.8808664259928, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1786570, Length=277, Percent_Identity=28.8808664259928, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1786490, Length=277, Percent_Identity=28.8808664259928, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1789981, Length=216, Percent_Identity=32.4074074074074, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 33769; Mature: 33769

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDLKRPRLSVVRQCALLQLNRSSVYYRPVPESEGNLELMRLIDAQFLETPYYGSRQMTR
CCCCCCHHHHHHHHHHHHEECCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
HLRRLGHDVGRKRVRRLMATMGLRAIYQKPHTTIPHPGHRKYPYLLRDLVIDRPNQVWCS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEC
DITYIPMRKGFLYLVAIMDWSTRKVLAWRLSNTMDAEFCIEALQEALIRYGAPEIFNTDQ
CCEECCHHCCEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
GSQFTTPRFTDVLQARQIRISMDGRGRWLDNVFIERLWRSLKYECVYLHAFETGSELRAG
CCCCCCCHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHH
LISWIAHYNGQRPHSALAGRTPDEAYHNAPAPLGPGLTPDPMANSNTVNLAA
HHHHHHHCCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECC
>Mature Secondary Structure
MIDLKRPRLSVVRQCALLQLNRSSVYYRPVPESEGNLELMRLIDAQFLETPYYGSRQMTR
CCCCCCHHHHHHHHHHHHEECCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
HLRRLGHDVGRKRVRRLMATMGLRAIYQKPHTTIPHPGHRKYPYLLRDLVIDRPNQVWCS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEC
DITYIPMRKGFLYLVAIMDWSTRKVLAWRLSNTMDAEFCIEALQEALIRYGAPEIFNTDQ
CCEECCHHCCEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
GSQFTTPRFTDVLQARQIRISMDGRGRWLDNVFIERLWRSLKYECVYLHAFETGSELRAG
CCCCCCCHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHH
LISWIAHYNGQRPHSALAGRTPDEAYHNAPAPLGPGLTPDPMANSNTVNLAA
HHHHHHHCCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2987844; 9278503 [H]