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The map label for this gene is recD [H]

Identifier: 162146783

GI number: 162146783

Start: 983509

End: 985695

Strand: Reverse

Name: recD [H]

Synonym: GDI_0965

Alternate gene names: 162146783

Gene position: 985695-983509 (Counterclockwise)

Preceding gene: 162146790

Following gene: 162146776

Centisome position: 24.99

GC content: 64.01

Gene sequence:

>2187_bases
ATGAGCGGACGCGCCACCGACTCTTCGCCCACGGAAGTGCTGGCGGGACTGGTCGAGCGGGTGACGTTCCACAACGCCGA
GAACGGCTTCTGCGTTCTGCGGGTGAAGGTGCGGGGGCAGCGCGATCTGGTCACTGTTGTCGGCCATGCCGCCATGATTT
CGGCGGGCGAGTTCGTGCAGATGTCGGGACGCTGGTTCAACGACCACACCCACGGCCTTCAGTTCAAGGCCGAGTTTCTC
AAGGCCAGCCCGCCGACCACGGTCGAGGGCATCGAGCGTTATCTTGGTTCGGGCATGATCCGGGGCATCGGCCCCGTCTA
TGCCAAAAAGCTGGTGAAAGCGTTCGGCGAGGCGGTTTTCGACCTGATCGAGCAGGAGCCCGGCAGGCTGCGGGAGGTGA
CGGGCATCGGTCCCAAGCGCGCCGAACGGATCGTCGCTGGCTGGGCGGATCAGAAGGTGATCCGCGAGATCATGCTGTTC
CTGCACAGCAACGGCGTCGGCACCTCGCGGGCAGTCCGGATCTTTAAGACCTACGGGCAGGATGCGGTCCGACTGATCAG
CGAGAACCCCTACCGGCTTGCGAAGGACATCCGGGGGATCGGATTCAAGACCGCTGACCAGATTGCCCAGAAGATGGGGA
TCGCGCCCGACGCCATGATCCGGGTGAGGGCAGGGATCTCCTATGCGCTTGGCGAGGCCATGGACGAAGGGCATTGCGGC
CTGCCGGTCGGGGAATTGCTGACCAGCACCGCCGAACTGCTGGAGGTAGCCGCCCCTCTGATCGAGACTGCCCTCGCGCT
GGAGCTGGAGGCGGGCGACGTTATTGCCGACAGCGTGGGAGAGACGGGCTGTATCTTCCTTGCTGGTCTCTATCGCGCGG
AGCAGAGCATCGCCGAGCGGTTGCGCGCCTGCGCCGTCGGTCGTCCGCCCTGGCCGGACATCGACGCTGAAAAGGCCATG
GCCTGGGTGGAAGGCAAGACCGGACTGGCTCTGGCGCCTAGCCAGCAGAAGGCGGTGCGTCTGGCTTTGGGTAGCAAGGT
GCTGGTGATTACGGGTGGTCCCGGCGTAGGCAAGACCACGCTGGTCAACGCCATTCTCAAGATCGTGACGGCCAAGGGCG
CCGACGTGCAGCTTTGTGCGCCGACGGGTCGCGCAGCGAAGCGCCTGTCGGAAAGCACGGGGCTGGAGGGCAAGACTATC
CACCGCCTGCTGGAGACGGATCCGGCGACTGGCAGCTTCAAGCGGGACGATACCAACCCGCTGACCTGCGATCTGCTGGT
CGTGGACGAAGCCAGCATGGTGGACGTGCTGCTGATGCGCTCCCTGTTGCGCGCCTTGCCCGACAGCGCAGCCTTGTTGA
TCGTCGGCGATGTGGACCAGTTGCCGTCGGTCGGGCCGGGGCAAGTGCTGGCCGACATCATCAACTCCGATGCCGTACCT
GTGGTGCGGCTGACCGAGGTGTTCCGCCAGGCCGCGCAGAGCCGGATCATCACCAACGCGCACCGGATCAATGAGGGCAG
GATGCCCGAACTGAGCGCGGAAGAGGGATCGGATTTCTACTTCGTCGAGGCGGCAGAACCGGAGATCGGGCTACGCAAGC
TGCTGGCCGTGGTGAAGGACCGCATCCCGGCGCGGTTCGGGCTGGACCCTGTTCGCGACGTGCAGGTGCTCTGCCCGATG
AACCGGGGCGGGCTTGGGGCGCGGTCGCTGAATATCGAATTGCAGCAGGCGCTGAACCCGCCAGGCGACGTGAAGGTCGA
GCGGTTCGGCTGGACCTATGGTCCGGGTGACAAGGTGATGCAGATCGCCAACGATTATGACCGGGACGTCTTCAACGGAG
ATCTTGGCGTCATCGACAGGATCGATATTGAAGAAGGCGAACTGACGGTTTCATTCGATGGACGGGAGGTCGTTTACGGC
TTCGGCGAGCTGGATGAACTGGTGCTGGCCTACGCGACGACCATTCACAAGAGCCAGGGGTCGGAATACCCGGGGGTGGT
GATCCCATTGGTGACGCAGCATTACGCCATGTTGGAGCGGAACCTGCTCTATACCGGCGTGACACGGGGGCGGAAACTCG
TTGTCCTGATCGGGCAGAAGAAGGCGCTGGCCATTGCTGTGCGGAATCAGGGCGGGAGACGGCGGTGGTCGAAGCTCAGG
GAATGGTTGGCTGGCGGTGCCACATGA

Upstream 100 bases:

>100_bases
GGATACAGGCGCGTCGTACAAATACTGGCGTACGACGGCGGCACGGGAGGGGAGGGCGAGTCATGAACGATACGGGAACG
CGGTTCTTCCGGCAGGCCGG

Downstream 100 bases:

>100_bases
GGCTGTATCTCCGTGTAGGTTGCCCGCTCCCACTCTGATCGTCCCATCGGGATTTGCAGATTCTCGAAAGCGGACCGAGT
CCACGACAGATATCGCTTCG

Product: exodeoxyribonuclease V alpha chain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 728; Mature: 727

Protein sequence:

>728_residues
MSGRATDSSPTEVLAGLVERVTFHNAENGFCVLRVKVRGQRDLVTVVGHAAMISAGEFVQMSGRWFNDHTHGLQFKAEFL
KASPPTTVEGIERYLGSGMIRGIGPVYAKKLVKAFGEAVFDLIEQEPGRLREVTGIGPKRAERIVAGWADQKVIREIMLF
LHSNGVGTSRAVRIFKTYGQDAVRLISENPYRLAKDIRGIGFKTADQIAQKMGIAPDAMIRVRAGISYALGEAMDEGHCG
LPVGELLTSTAELLEVAAPLIETALALELEAGDVIADSVGETGCIFLAGLYRAEQSIAERLRACAVGRPPWPDIDAEKAM
AWVEGKTGLALAPSQQKAVRLALGSKVLVITGGPGVGKTTLVNAILKIVTAKGADVQLCAPTGRAAKRLSESTGLEGKTI
HRLLETDPATGSFKRDDTNPLTCDLLVVDEASMVDVLLMRSLLRALPDSAALLIVGDVDQLPSVGPGQVLADIINSDAVP
VVRLTEVFRQAAQSRIITNAHRINEGRMPELSAEEGSDFYFVEAAEPEIGLRKLLAVVKDRIPARFGLDPVRDVQVLCPM
NRGGLGARSLNIELQQALNPPGDVKVERFGWTYGPGDKVMQIANDYDRDVFNGDLGVIDRIDIEEGELTVSFDGREVVYG
FGELDELVLAYATTIHKSQGSEYPGVVIPLVTQHYAMLERNLLYTGVTRGRKLVVLIGQKKALAIAVRNQGGRRRWSKLR
EWLAGGAT

Sequences:

>Translated_728_residues
MSGRATDSSPTEVLAGLVERVTFHNAENGFCVLRVKVRGQRDLVTVVGHAAMISAGEFVQMSGRWFNDHTHGLQFKAEFL
KASPPTTVEGIERYLGSGMIRGIGPVYAKKLVKAFGEAVFDLIEQEPGRLREVTGIGPKRAERIVAGWADQKVIREIMLF
LHSNGVGTSRAVRIFKTYGQDAVRLISENPYRLAKDIRGIGFKTADQIAQKMGIAPDAMIRVRAGISYALGEAMDEGHCG
LPVGELLTSTAELLEVAAPLIETALALELEAGDVIADSVGETGCIFLAGLYRAEQSIAERLRACAVGRPPWPDIDAEKAM
AWVEGKTGLALAPSQQKAVRLALGSKVLVITGGPGVGKTTLVNAILKIVTAKGADVQLCAPTGRAAKRLSESTGLEGKTI
HRLLETDPATGSFKRDDTNPLTCDLLVVDEASMVDVLLMRSLLRALPDSAALLIVGDVDQLPSVGPGQVLADIINSDAVP
VVRLTEVFRQAAQSRIITNAHRINEGRMPELSAEEGSDFYFVEAAEPEIGLRKLLAVVKDRIPARFGLDPVRDVQVLCPM
NRGGLGARSLNIELQQALNPPGDVKVERFGWTYGPGDKVMQIANDYDRDVFNGDLGVIDRIDIEEGELTVSFDGREVVYG
FGELDELVLAYATTIHKSQGSEYPGVVIPLVTQHYAMLERNLLYTGVTRGRKLVVLIGQKKALAIAVRNQGGRRRWSKLR
EWLAGGAT
>Mature_727_residues
SGRATDSSPTEVLAGLVERVTFHNAENGFCVLRVKVRGQRDLVTVVGHAAMISAGEFVQMSGRWFNDHTHGLQFKAEFLK
ASPPTTVEGIERYLGSGMIRGIGPVYAKKLVKAFGEAVFDLIEQEPGRLREVTGIGPKRAERIVAGWADQKVIREIMLFL
HSNGVGTSRAVRIFKTYGQDAVRLISENPYRLAKDIRGIGFKTADQIAQKMGIAPDAMIRVRAGISYALGEAMDEGHCGL
PVGELLTSTAELLEVAAPLIETALALELEAGDVIADSVGETGCIFLAGLYRAEQSIAERLRACAVGRPPWPDIDAEKAMA
WVEGKTGLALAPSQQKAVRLALGSKVLVITGGPGVGKTTLVNAILKIVTAKGADVQLCAPTGRAAKRLSESTGLEGKTIH
RLLETDPATGSFKRDDTNPLTCDLLVVDEASMVDVLLMRSLLRALPDSAALLIVGDVDQLPSVGPGQVLADIINSDAVPV
VRLTEVFRQAAQSRIITNAHRINEGRMPELSAEEGSDFYFVEAAEPEIGLRKLLAVVKDRIPARFGLDPVRDVQVLCPMN
RGGLGARSLNIELQQALNPPGDVKVERFGWTYGPGDKVMQIANDYDRDVFNGDLGVIDRIDIEEGELTVSFDGREVVYGF
GELDELVLAYATTIHKSQGSEYPGVVIPLVTQHYAMLERNLLYTGVTRGRKLVVLIGQKKALAIAVRNQGGRRRWSKLRE
WLAGGAT

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=449, Percent_Identity=29.6213808463252, Blast_Score=140, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 78693; Mature: 78562

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRATDSSPTEVLAGLVERVTFHNAENGFCVLRVKVRGQRDLVTVVGHAAMISAGEFVQ
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEE
MSGRWFNDHTHGLQFKAEFLKASPPTTVEGIERYLGSGMIRGIGPVYAKKLVKAFGEAVF
ECCCEECCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHH
DLIEQEPGRLREVTGIGPKRAERIVAGWADQKVIREIMLFLHSNGVGTSRAVRIFKTYGQ
HHHHCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCH
DAVRLISENPYRLAKDIRGIGFKTADQIAQKMGIAPDAMIRVRAGISYALGEAMDEGHCG
HHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCHHHEEECCCCHHHHHHHCCCCCCC
LPVGELLTSTAELLEVAAPLIETALALELEAGDVIADSVGETGCIFLAGLYRAEQSIAER
CCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEHHCCCCCCHHHHHHHHHHHHHHHHH
LRACAVGRPPWPDIDAEKAMAWVEGKTGLALAPSQQKAVRLALGSKVLVITGGPGVGKTT
HHHHHCCCCCCCCCCHHHHHHEECCCCCEEECCCHHHHHEEECCCEEEEEECCCCCCHHH
LVNAILKIVTAKGADVQLCAPTGRAAKRLSESTGLEGKTIHRLLETDPATGSFKRDDTNP
HHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCC
LTCDLLVVDEASMVDVLLMRSLLRALPDSAALLIVGDVDQLPSVGPGQVLADIINSDAVP
EEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCHHHHHHHHHCCCCCC
VVRLTEVFRQAAQSRIITNAHRINEGRMPELSAEEGSDFYFVEAAEPEIGLRKLLAVVKD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
RIPARFGLDPVRDVQVLCPMNRGGLGARSLNIELQQALNPPGDVKVERFGWTYGPGDKVM
CCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEHHHHCCCCCCEEEEECCCEECCCHHHH
QIANDYDRDVFNGDLGVIDRIDIEEGELTVSFDGREVVYGFGELDELVLAYATTIHKSQG
HHHHHHCCHHCCCCCCCEEEEECCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHHCCC
SEYPGVVIPLVTQHYAMLERNLLYTGVTRGRKLVVLIGQKKALAIAVRNQGGRRRWSKLR
CCCCCEEEHHHHHHHHHHHHCHHEEECCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHH
EWLAGGAT
HHHCCCCC
>Mature Secondary Structure 
SGRATDSSPTEVLAGLVERVTFHNAENGFCVLRVKVRGQRDLVTVVGHAAMISAGEFVQ
CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEE
MSGRWFNDHTHGLQFKAEFLKASPPTTVEGIERYLGSGMIRGIGPVYAKKLVKAFGEAVF
ECCCEECCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHH
DLIEQEPGRLREVTGIGPKRAERIVAGWADQKVIREIMLFLHSNGVGTSRAVRIFKTYGQ
HHHHCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCH
DAVRLISENPYRLAKDIRGIGFKTADQIAQKMGIAPDAMIRVRAGISYALGEAMDEGHCG
HHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCHHHEEECCCCHHHHHHHCCCCCCC
LPVGELLTSTAELLEVAAPLIETALALELEAGDVIADSVGETGCIFLAGLYRAEQSIAER
CCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEHHCCCCCCHHHHHHHHHHHHHHHHH
LRACAVGRPPWPDIDAEKAMAWVEGKTGLALAPSQQKAVRLALGSKVLVITGGPGVGKTT
HHHHHCCCCCCCCCCHHHHHHEECCCCCEEECCCHHHHHEEECCCEEEEEECCCCCCHHH
LVNAILKIVTAKGADVQLCAPTGRAAKRLSESTGLEGKTIHRLLETDPATGSFKRDDTNP
HHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCC
LTCDLLVVDEASMVDVLLMRSLLRALPDSAALLIVGDVDQLPSVGPGQVLADIINSDAVP
EEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCHHHHHHHHHCCCCCC
VVRLTEVFRQAAQSRIITNAHRINEGRMPELSAEEGSDFYFVEAAEPEIGLRKLLAVVKD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
RIPARFGLDPVRDVQVLCPMNRGGLGARSLNIELQQALNPPGDVKVERFGWTYGPGDKVM
CCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEHHHHCCCCCCEEEEECCCEECCCHHHH
QIANDYDRDVFNGDLGVIDRIDIEEGELTVSFDGREVVYGFGELDELVLAYATTIHKSQG
HHHHHHCCHHCCCCCCCEEEEECCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHHCCC
SEYPGVVIPLVTQHYAMLERNLLYTGVTRGRKLVVLIGQKKALAIAVRNQGGRRRWSKLR
CCCCCEEEHHHHHHHHHHHHCHHEEECCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHH
EWLAGGAT
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]