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The map label for this gene is oprB [H]

Identifier: 162146728

GI number: 162146728

Start: 920667

End: 921905

Strand: Reverse

Name: oprB [H]

Synonym: GDI_0906

Alternate gene names: 162146728

Gene position: 921905-920667 (Counterclockwise)

Preceding gene: 162146730

Following gene: 162146727

Centisome position: 23.37

GC content: 61.99

Gene sequence:

>1239_bases
ATGGTTTCGGCCTGGGGCAATGCCGTCCAGAACCTCAATCGCAAGGGGATCGGCCTGGTCATCGACTATACCAGCGAAAG
CGCACTGGCGCTCGATGCCGGCAATGCCGGGGACGCAGGCTATGCGCACCAGATCGGCGTACAGTTGGACCTGGATTGGG
ACAAGCTGGTGGGCTGGCGCGGCTTTGTGACCCATGCGGCCATCGTCAATCGGGCGGGCCATAACATGGCCGCCGATTTC
GGTGACAGGTCACTCAACGGATTCCAGGAGATCTATGGCGGCGGCGGCAATACGGCCGTTCACATGGTCTATGTCTATGG
CACGCAGAACCTGTTCCACGACCGCGTGCAGATCGCGATCGGCAAGCTGCCGGTCAATATCGACTTTTCCGCGTCCCCCC
TGTTCTGCACGTTCATGAACAAATCCATGTGCGGAAACCCCAAATCCCTGACCCGCGGCGCCGCGGGTTTCGGCACCTAT
CCGGGTTCGACCTGGGGGACGCGCGTACGCTACTGGCCCATGCACGGGGTCTACGCGCAGGCCGGACTGTACGGCGTCAA
TCCGGACCTCAATACCAATCGGTATGACCGCACCGGATTCAACTTCAACACGAATCTCTATACCGGCGTCTACGTTCCGG
TCGAGGTCGGCCTGATCCCGTCCTTCGGCAGGAACCAGCTTGTCGGCCACTACAAGGTCGGCGTCGCCTACGATTCCTCG
AACTACGCCGACAATTACTACGATGTTAACGGCGCCCCCCTGGCGCTGACGCGCAGGGCCGCGCGGATGGACACCGGCAA
GACGCAGCTCTGGATCGAAGGCGACCAGATGCTGATCCGCAACGGCCATGGCCCGCTCAACGGATTCTATGTCATGGCCG
GCCTGGTGCGTAACACGCCGGAAAGCAGCCCGTACCTCTATCAATATTATTTCGGGATCGTGGACCGGGGCTTCTGGCGC
GCGCGCCCCGACGACACGTTCGGCATCGAGGTCTCGCGGGCCACGGCCAGTCCGGACCTTGTCGATACGCAATGGCTCGA
TTACGCAGCGGGGCGCAAGCTGCCGGCCAATGCCACCTATCCGCAAAGCCATATCAGCGTGCTGGAAGCCACCTACAACA
TCCACGTCTGCGAGGGGCTCTCGATCCAGCCGGACTACCAGCGGATCATGCGGCCCAACCTGCAGCGCAACAAACCCGCG
ATCGACGCGATCGGCCTGAAGATCCACGCGACGCTCTGA

Upstream 100 bases:

>100_bases
CGCGCAATATCGTGGTCCGGTCGCGGAAACCGCCCCGTCCTTCTCGCTCGATACCCCCACATCGTACGCGAACACCCCGT
TCACCCCGCCGGTTGAACAT

Downstream 100 bases:

>100_bases
CGGTCGCCCCCCCCGCCTGCCTTTTCGCAACCATCCGGTCTGGAGCCCGCCATGTCCCGCCCGCCGCTGCCGCCTTTCGA
TGCCGAAACTGCCGCGCTCA

Product: porin B

Products: NA

Alternate protein names: Glucose porin; Outer membrane protein D1 [H]

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MVSAWGNAVQNLNRKGIGLVIDYTSESALALDAGNAGDAGYAHQIGVQLDLDWDKLVGWRGFVTHAAIVNRAGHNMAADF
GDRSLNGFQEIYGGGGNTAVHMVYVYGTQNLFHDRVQIAIGKLPVNIDFSASPLFCTFMNKSMCGNPKSLTRGAAGFGTY
PGSTWGTRVRYWPMHGVYAQAGLYGVNPDLNTNRYDRTGFNFNTNLYTGVYVPVEVGLIPSFGRNQLVGHYKVGVAYDSS
NYADNYYDVNGAPLALTRRAARMDTGKTQLWIEGDQMLIRNGHGPLNGFYVMAGLVRNTPESSPYLYQYYFGIVDRGFWR
ARPDDTFGIEVSRATASPDLVDTQWLDYAAGRKLPANATYPQSHISVLEATYNIHVCEGLSIQPDYQRIMRPNLQRNKPA
IDAIGLKIHATL

Sequences:

>Translated_412_residues
MVSAWGNAVQNLNRKGIGLVIDYTSESALALDAGNAGDAGYAHQIGVQLDLDWDKLVGWRGFVTHAAIVNRAGHNMAADF
GDRSLNGFQEIYGGGGNTAVHMVYVYGTQNLFHDRVQIAIGKLPVNIDFSASPLFCTFMNKSMCGNPKSLTRGAAGFGTY
PGSTWGTRVRYWPMHGVYAQAGLYGVNPDLNTNRYDRTGFNFNTNLYTGVYVPVEVGLIPSFGRNQLVGHYKVGVAYDSS
NYADNYYDVNGAPLALTRRAARMDTGKTQLWIEGDQMLIRNGHGPLNGFYVMAGLVRNTPESSPYLYQYYFGIVDRGFWR
ARPDDTFGIEVSRATASPDLVDTQWLDYAAGRKLPANATYPQSHISVLEATYNIHVCEGLSIQPDYQRIMRPNLQRNKPA
IDAIGLKIHATL
>Mature_412_residues
MVSAWGNAVQNLNRKGIGLVIDYTSESALALDAGNAGDAGYAHQIGVQLDLDWDKLVGWRGFVTHAAIVNRAGHNMAADF
GDRSLNGFQEIYGGGGNTAVHMVYVYGTQNLFHDRVQIAIGKLPVNIDFSASPLFCTFMNKSMCGNPKSLTRGAAGFGTY
PGSTWGTRVRYWPMHGVYAQAGLYGVNPDLNTNRYDRTGFNFNTNLYTGVYVPVEVGLIPSFGRNQLVGHYKVGVAYDSS
NYADNYYDVNGAPLALTRRAARMDTGKTQLWIEGDQMLIRNGHGPLNGFYVMAGLVRNTPESSPYLYQYYFGIVDRGFWR
ARPDDTFGIEVSRATASPDLVDTQWLDYAAGRKLPANATYPQSHISVLEATYNIHVCEGLSIQPDYQRIMRPNLQRNKPA
IDAIGLKIHATL

Specific function: Substrate-selective channel for a variety of different sugars. Could potentially facilitate the diffusion of diverse compounds, dependent on the presence of a hydroxyl group, but is presumably restricted to carbohydrates. Involved in the transport of gluc

COG id: COG3659

COG function: function code M; Carbohydrate-selective porin

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007049 [H]

Pfam domain/function: PF04966 OprB [H]

EC number: NA

Molecular weight: Translated: 45397; Mature: 45397

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSAWGNAVQNLNRKGIGLVIDYTSESALALDAGNAGDAGYAHQIGVQLDLDWDKLVGWR
CCCCHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEEEECCHHHHCCCH
GFVTHAAIVNRAGHNMAADFGDRSLNGFQEIYGGGGNTAVHMVYVYGTQNLFHDRVQIAI
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEECCHHHHCEEEEEE
GKLPVNIDFSASPLFCTFMNKSMCGNPKSLTRGAAGFGTYPGSTWGTRVRYWPMHGVYAQ
EEEEEEEECCCCCEEEEECCCHHCCCCHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEHH
AGLYGVNPDLNTNRYDRTGFNFNTNLYTGVYVPVEVGLIPSFGRNQLVGHYKVGVAYDSS
CCEEECCCCCCCCCCCCCCCEECCCEEEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCC
NYADNYYDVNGAPLALTRRAARMDTGKTQLWIEGDQMLIRNGHGPLNGFYVMAGLVRNTP
CCCCCEEECCCCCEEEEHHHHHCCCCCEEEEECCCEEEEECCCCCCCHHHEEEHHHHCCC
ESSPYLYQYYFGIVDRGFWRARPDDTFGIEVSRATASPDLVDTQWLDYAAGRKLPANATY
CCCCEEEEEEEHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCC
PQSHISVLEATYNIHVCEGLSIQPDYQRIMRPNLQRNKPAIDAIGLKIHATL
CHHHHEEEEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCEEEEEEEEEEEC
>Mature Secondary Structure
MVSAWGNAVQNLNRKGIGLVIDYTSESALALDAGNAGDAGYAHQIGVQLDLDWDKLVGWR
CCCCHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEEEECCHHHHCCCH
GFVTHAAIVNRAGHNMAADFGDRSLNGFQEIYGGGGNTAVHMVYVYGTQNLFHDRVQIAI
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEECCHHHHCEEEEEE
GKLPVNIDFSASPLFCTFMNKSMCGNPKSLTRGAAGFGTYPGSTWGTRVRYWPMHGVYAQ
EEEEEEEECCCCCEEEEECCCHHCCCCHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEHH
AGLYGVNPDLNTNRYDRTGFNFNTNLYTGVYVPVEVGLIPSFGRNQLVGHYKVGVAYDSS
CCEEECCCCCCCCCCCCCCCEECCCEEEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCC
NYADNYYDVNGAPLALTRRAARMDTGKTQLWIEGDQMLIRNGHGPLNGFYVMAGLVRNTP
CCCCCEEECCCCCEEEEHHHHHCCCCCEEEEECCCEEEEECCCCCCCHHHEEEHHHHCCC
ESSPYLYQYYFGIVDRGFWRARPDDTFGIEVSRATASPDLVDTQWLDYAAGRKLPANATY
CCCCEEEEEEEHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCC
PQSHISVLEATYNIHVCEGLSIQPDYQRIMRPNLQRNKPAIDAIGLKIHATL
CHHHHEEEEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8125108; 10984043; 2450582; 8132494; 7768797 [H]