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The map label for this gene is yafC [C]

Identifier: 162146669

GI number: 162146669

Start: 864183

End: 865109

Strand: Reverse

Name: yafC [C]

Synonym: GDI_0847

Alternate gene names: 162146669

Gene position: 865109-864183 (Counterclockwise)

Preceding gene: 162146671

Following gene: 162146667

Centisome position: 21.93

GC content: 68.18

Gene sequence:

>927_bases
ATGACGCGACTCCCCGACCTGGAAGCCTGGGCCATCTTCGCCAAGGTGGTGGAAACCGGGTCCTTCGCGCGGACGGCCGA
AGAGCTACAGATCTCGAAACCCACCGTGTCCAAGGCGATCAGCCGGCTGGAACACCGGCTGGGGTCGCCCCTGCTGCATC
GCACGTCACGGCAGTTCTCGCTGACCGAAACCGGGCGTGGCGCGCTGGAGCGCGCCACGCGCATCCTGACCGATGGAGAA
ATGGCCGAGGCCGAGGCCCGCGAGCAGACGGTGCATCCGCGCGGCCTGATTCGCATGACCGCGCCGATGACCTTCGGGAT
CGCGCATCTGGCACCCGTCCTGCCGGATTTCATGGCGTCCTATCCGGACATCGACATCACGATAGGATTCAGCGACCAGA
TCGTCGACCTGGTCGGCGGCGGCTACGACCTGGCCGTGCGGATCGCGTCGCTGTCGGATTCCTCGCTGCGGGCGCGGCGG
CTGTGCACGGTGCGACTGCTGATGGTGGCGTCGCCCGGGCTGCTGGCACGGGTGGGACAACCCACCCACCCGCGCGACCT
GGAACAGATTCCGGGCTTCGTCTACACCAACGTCGCGACGCCGGGGCAGATCCGGCTGCATCACGCCCAGGCCGGCGAGT
ATACGATCGTGCAGCCCGGCCGGCTGCATGCCAACAATGCCGAGGCGTTTCGCCCCTTCCTGCTGGCCGGCCTGGGCATC
GCGCTGTTGCCGGAATTCATGATCTGGGATGACCTGGCCGCCGGCCGGCTGGTGAATGTCCTGCCCGAATGGCAGGTGAC
GCCGGTGGCGATCCATCTGGTGACCCCGCCGGGACAGACGCGTCCGGCGCGGGTATCGGTACTTCTGGAGTATCTGGCAA
GCCGTTTCGCGACCGCGCCCTGGGCCCGGTCGGCCCGCGCGGCGTAG

Upstream 100 bases:

>100_bases
ATTTCTCCTGTCCCTGGCGGGTTGTGTCTGGACAGAAGATAGGCGCAACGGGCATCGTAAAAAATGGAAATGGTGGAAAC
ACATAGGTTCTGGAAACGAC

Downstream 100 bases:

>100_bases
CACCGGAGGCTGTTTCAAAAGTCCTGCCTCTTATCCGTCCTTTACCGTCAGGGGCAGGCCCGCGACCACGAACATGACTC
GCCGCGCATCGCGGGCGATC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MTRLPDLEAWAIFAKVVETGSFARTAEELQISKPTVSKAISRLEHRLGSPLLHRTSRQFSLTETGRGALERATRILTDGE
MAEAEAREQTVHPRGLIRMTAPMTFGIAHLAPVLPDFMASYPDIDITIGFSDQIVDLVGGGYDLAVRIASLSDSSLRARR
LCTVRLLMVASPGLLARVGQPTHPRDLEQIPGFVYTNVATPGQIRLHHAQAGEYTIVQPGRLHANNAEAFRPFLLAGLGI
ALLPEFMIWDDLAAGRLVNVLPEWQVTPVAIHLVTPPGQTRPARVSVLLEYLASRFATAPWARSARAA

Sequences:

>Translated_308_residues
MTRLPDLEAWAIFAKVVETGSFARTAEELQISKPTVSKAISRLEHRLGSPLLHRTSRQFSLTETGRGALERATRILTDGE
MAEAEAREQTVHPRGLIRMTAPMTFGIAHLAPVLPDFMASYPDIDITIGFSDQIVDLVGGGYDLAVRIASLSDSSLRARR
LCTVRLLMVASPGLLARVGQPTHPRDLEQIPGFVYTNVATPGQIRLHHAQAGEYTIVQPGRLHANNAEAFRPFLLAGLGI
ALLPEFMIWDDLAAGRLVNVLPEWQVTPVAIHLVTPPGQTRPARVSVLLEYLASRFATAPWARSARAA
>Mature_307_residues
TRLPDLEAWAIFAKVVETGSFARTAEELQISKPTVSKAISRLEHRLGSPLLHRTSRQFSLTETGRGALERATRILTDGEM
AEAEAREQTVHPRGLIRMTAPMTFGIAHLAPVLPDFMASYPDIDITIGFSDQIVDLVGGGYDLAVRIASLSDSSLRARRL
CTVRLLMVASPGLLARVGQPTHPRDLEQIPGFVYTNVATPGQIRLHHAQAGEYTIVQPGRLHANNAEAFRPFLLAGLGIA
LLPEFMIWDDLAAGRLVNVLPEWQVTPVAIHLVTPPGQTRPARVSVLLEYLASRFATAPWARSARAA

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=304, Percent_Identity=34.5394736842105, Blast_Score=164, Evalue=9e-42,
Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=34.5637583892617, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=30.5841924398625, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=28.2758620689655, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1789440, Length=284, Percent_Identity=29.5774647887324, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=28.4246575342466, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789173, Length=296, Percent_Identity=28.0405405405405, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787589, Length=288, Percent_Identity=26.7361111111111, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI157672245, Length=207, Percent_Identity=31.8840579710145, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1790208, Length=144, Percent_Identity=29.8611111111111, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33657; Mature: 33526

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLPDLEAWAIFAKVVETGSFARTAEELQISKPTVSKAISRLEHRLGSPLLHRTSRQFS
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHCCCCEE
LTETGRGALERATRILTDGEMAEAEAREQTVHPRGLIRMTAPMTFGIAHLAPVLPDFMAS
ECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHC
YPDIDITIGFSDQIVDLVGGGYDLAVRIASLSDSSLRARRLCTVRLLMVASPGLLARVGQ
CCCCEEEECCCHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHCCC
PTHPRDLEQIPGFVYTNVATPGQIRLHHAQAGEYTIVQPGRLHANNAEAFRPFLLAGLGI
CCCCCCHHHCCCEEEECCCCCCEEEEEECCCCCEEEECCCCEECCCHHHHHHHHHHHHHH
ALLPEFMIWDDLAAGRLVNVLPEWQVTPVAIHLVTPPGQTRPARVSVLLEYLASRFATAP
HHHHHHHHHHHHHHCHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
WARSARAA
CCCCCCCC
>Mature Secondary Structure 
TRLPDLEAWAIFAKVVETGSFARTAEELQISKPTVSKAISRLEHRLGSPLLHRTSRQFS
CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHCCCCEE
LTETGRGALERATRILTDGEMAEAEAREQTVHPRGLIRMTAPMTFGIAHLAPVLPDFMAS
ECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHC
YPDIDITIGFSDQIVDLVGGGYDLAVRIASLSDSSLRARRLCTVRLLMVASPGLLARVGQ
CCCCEEEECCCHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHCCC
PTHPRDLEQIPGFVYTNVATPGQIRLHHAQAGEYTIVQPGRLHANNAEAFRPFLLAGLGI
CCCCCCHHHCCCEEEECCCCCCEEEEEECCCCCEEEECCCCEECCCHHHHHHHHHHHHHH
ALLPEFMIWDDLAAGRLVNVLPEWQVTPVAIHLVTPPGQTRPARVSVLLEYLASRFATAP
HHHHHHHHHHHHHHCHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
WARSARAA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]