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The map label for this gene is dapD [H]

Identifier: 162138523

GI number: 162138523

Start: 761811

End: 762656

Strand: Reverse

Name: dapD [H]

Synonym: RPB_0677

Alternate gene names: 162138523

Gene position: 762656-761811 (Counterclockwise)

Preceding gene: 86747804

Following gene: 86747802

Centisome position: 14.3

GC content: 68.2

Gene sequence:

>846_bases
ATGTCGTACGCCGCTCTCGAATCCACCATCAATACCGCTTTCGACGCGCGCGACACGGTCAGCGCCGCGACCAAGGGCGA
GATTCGGGATGCCGTCGATCACGCGCTCGATCTGCTCGACAAGGGCGAGGCGCGCGTTGCCGAGCGCGAGGCGTCGGGCA
CGTGGACCGTCAACCAGTGGCTCAAGAAGGCGGTGCTGCTGTCGTTCCGCCTCAACGACATGAGCACGATTCCCGGCGGC
CCCGGCGGCGCGAACTGGTGGGACAAGGTGCCGTCGAAATTCGAGGGCTGGGGCGAGAACCGTTTCCGCGAGGCCGGCTT
CCGCGCGGTGCCGGGCGCGATCGTGCGCCGCTCCGCCTTCATCGCCAAGAACGCGGTGCTGATGCCGTCCTTCGTCAATC
TCGGCGCCTATGTCGATGAAGCCACCATGGTCGACACCTGGTCGACGGTCGGCTCCTGCGCGCAGATCGGCAAGCGCGTG
CACATCTCCGGCGGCGTCGGCATCGGCGGCGTGCTGGAGCCGCTGCAGGCGGGTCCGGTGATCATCGAGGACGACTGCTT
CATCGGCGCGCGCTCCGAAGTCGCCGAGGGCGTGATCGTCCGCCGTGGCGCGGTGCTGGCGATGGGCGTGTTCCTCGGCG
CCTCGACCAAGATCGTCGACCGCGAGACCGGCGAGACCTTCATCGGCGAAGTGCCCGAATACGCCGTGCTGGTGCCCGGC
ACGCTGCCGGGCAAGCCGCTGAAGAACGGCAATCCGGGCCCGGCCACCGCCTGCGCGGTGATCGTCAAGCGCGTCGACGA
GCGCACCCGCTCCAAGACCAGCATCAACGAATTGCTGCGGGACTGA

Upstream 100 bases:

>100_bases
CTGGCGGGGCTGAATGCCCGCGATCGCTTGGCTTGACTCTCCCCGGCCGAATCCGGACAACCATCCCCCGAAAATCATCT
TGCGCCCCAAGGACCTCCCG

Downstream 100 bases:

>100_bases
TCGCGCCGTGACCGCGACCGCGCTCGAGATCGCGCAGGCGCTGCTGCGCTGTCCGTCGGTGACGCCGGCCGATGCCGGCG
CGCTCGGCGTGCTGGAGGCG

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MSYAALESTINTAFDARDTVSAATKGEIRDAVDHALDLLDKGEARVAEREASGTWTVNQWLKKAVLLSFRLNDMSTIPGG
PGGANWWDKVPSKFEGWGENRFREAGFRAVPGAIVRRSAFIAKNAVLMPSFVNLGAYVDEATMVDTWSTVGSCAQIGKRV
HISGGVGIGGVLEPLQAGPVIIEDDCFIGARSEVAEGVIVRRGAVLAMGVFLGASTKIVDRETGETFIGEVPEYAVLVPG
TLPGKPLKNGNPGPATACAVIVKRVDERTRSKTSINELLRD

Sequences:

>Translated_281_residues
MSYAALESTINTAFDARDTVSAATKGEIRDAVDHALDLLDKGEARVAEREASGTWTVNQWLKKAVLLSFRLNDMSTIPGG
PGGANWWDKVPSKFEGWGENRFREAGFRAVPGAIVRRSAFIAKNAVLMPSFVNLGAYVDEATMVDTWSTVGSCAQIGKRV
HISGGVGIGGVLEPLQAGPVIIEDDCFIGARSEVAEGVIVRRGAVLAMGVFLGASTKIVDRETGETFIGEVPEYAVLVPG
TLPGKPLKNGNPGPATACAVIVKRVDERTRSKTSINELLRD
>Mature_280_residues
SYAALESTINTAFDARDTVSAATKGEIRDAVDHALDLLDKGEARVAEREASGTWTVNQWLKKAVLLSFRLNDMSTIPGGP
GGANWWDKVPSKFEGWGENRFREAGFRAVPGAIVRRSAFIAKNAVLMPSFVNLGAYVDEATMVDTWSTVGSCAQIGKRVH
ISGGVGIGGVLEPLQAGPVIIEDDCFIGARSEVAEGVIVRRGAVLAMGVFLGASTKIVDRETGETFIGEVPEYAVLVPGT
LPGKPLKNGNPGPATACAVIVKRVDERTRSKTSINELLRD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=276, Percent_Identity=59.7826086956522, Blast_Score=303, Evalue=6e-84,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 29928; Mature: 29797

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYAALESTINTAFDARDTVSAATKGEIRDAVDHALDLLDKGEARVAEREASGTWTVNQW
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHH
LKKAVLLSFRLNDMSTIPGGPGGANWWDKVPSKFEGWGENRFREAGFRAVPGAIVRRSAF
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHCCCCCHHHHHCCCCCCCHHHHHHHHH
IAKNAVLMPSFVNLGAYVDEATMVDTWSTVGSCAQIGKRVHISGGVGIGGVLEPLQAGPV
HHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHCCCCE
IIEDDCFIGARSEVAEGVIVRRGAVLAMGVFLGASTKIVDRETGETFIGEVPEYAVLVPG
EEECCCCCCCHHHHHCCHHHHCCHHHHHHHHHCCCCEEEECCCCCHHHCCCCCEEEEECC
TLPGKPLKNGNPGPATACAVIVKRVDERTRSKTSINELLRD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SYAALESTINTAFDARDTVSAATKGEIRDAVDHALDLLDKGEARVAEREASGTWTVNQW
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHH
LKKAVLLSFRLNDMSTIPGGPGGANWWDKVPSKFEGWGENRFREAGFRAVPGAIVRRSAF
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHCCCCCHHHHHCCCCCCCHHHHHHHHH
IAKNAVLMPSFVNLGAYVDEATMVDTWSTVGSCAQIGKRVHISGGVGIGGVLEPLQAGPV
HHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHCCCCE
IIEDDCFIGARSEVAEGVIVRRGAVLAMGVFLGASTKIVDRETGETFIGEVPEYAVLVPG
EEECCCCCCCHHHHHCCHHHHCCHHHHHHHHHCCCCEEEECCCCCHHHCCCCCEEEEECC
TLPGKPLKNGNPGPATACAVIVKRVDERTRSKTSINELLRD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA