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The map label for this gene is rbfA [H]

Identifier: 161936121

GI number: 161936121

Start: 1379187

End: 1379543

Strand: Reverse

Name: rbfA [H]

Synonym: M5005_Spy_1408

Alternate gene names: 161936121

Gene position: 1379543-1379187 (Counterclockwise)

Preceding gene: 71911222

Following gene: 71911219

Centisome position: 75.03

GC content: 38.94

Gene sequence:

>357_bases
ATGGCTATGGCTAATCATCGTATTGACCGCGTTGGGATGGAAATCAAGCGCGAAGTAAATGATATTCTTCAGAAAAAAGT
GCGTGATCCACGCGTTCAGGGAGTAACGATTACAGAAGTGCAAATGCAGGGTGACTTGTCACTTGCTAAAGTTTATTACA
CTATTATGAGTGACTTGGCATCTGATAATCAAAAAGCACAAACAGGGCTTGAAAAAGCGACTGGAACGATTAAACGTGAA
CTTGGCAAACAATTGACCATGTACAAAATTCCAGATTTGGTGTTTGAAAAAGACAATTCCATCGCCTATGGTAATAAAAT
TGATCAACTCTTACGAGATCTTGACAACAAATCCTAA

Upstream 100 bases:

>100_bases
TGGAATTCTCAGATTCCCTTTAATTGTCGTTATCAAAACAGGTAGCAATGTCATAAGCTGGGCTTTCAGCCTAGCTTTTG
TTTTAAAATGTGGAAAGGAA

Downstream 100 bases:

>100_bases
GTATTGCGGTGCGGATGTTATGACAGAAAGAGCCTTATCATTATGATAGGGCTCTTTTTAATTGTTATTTTGTGGTGCAA
ACTACAAAAAAAACACCAGA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MAMANHRIDRVGMEIKREVNDILQKKVRDPRVQGVTITEVQMQGDLSLAKVYYTIMSDLASDNQKAQTGLEKATGTIKRE
LGKQLTMYKIPDLVFEKDNSIAYGNKIDQLLRDLDNKS

Sequences:

>Translated_118_residues
MAMANHRIDRVGMEIKREVNDILQKKVRDPRVQGVTITEVQMQGDLSLAKVYYTIMSDLASDNQKAQTGLEKATGTIKRE
LGKQLTMYKIPDLVFEKDNSIAYGNKIDQLLRDLDNKS
>Mature_117_residues
AMANHRIDRVGMEIKREVNDILQKKVRDPRVQGVTITEVQMQGDLSLAKVYYTIMSDLASDNQKAQTGLEKATGTIKREL
GKQLTMYKIPDLVFEKDNSIAYGNKIDQLLRDLDNKS

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=113, Percent_Identity=37.1681415929204, Blast_Score=73, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13415; Mature: 13283

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMANHRIDRVGMEIKREVNDILQKKVRDPRVQGVTITEVQMQGDLSLAKVYYTIMSDLA
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
SDNQKAQTGLEKATGTIKRELGKQLTMYKIPDLVFEKDNSIAYGNKIDQLLRDLDNKS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
AMANHRIDRVGMEIKREVNDILQKKVRDPRVQGVTITEVQMQGDLSLAKVYYTIMSDLA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
SDNQKAQTGLEKATGTIKRELGKQLTMYKIPDLVFEKDNSIAYGNKIDQLLRDLDNKS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]